Mercurial > repos > iuc > ivar_variants
view test-data/zika/Z52_a_pass.vcf @ 16:194e3ceee923 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit dab395b37976a99a62334c3188073ee8b97f451f
| author | iuc |
|---|---|
| date | Mon, 11 Mar 2024 15:50:29 +0000 |
| parents | 045d6d00f606 |
| children |
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##fileformat=VCFv4.2 ##source=iVar ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=REF_DP,Number=1,Type=Integer,Description="Depth of reference base"> ##INFO=<ID=REF_RV,Number=1,Type=Integer,Description="Depth of reference base on reverse reads"> ##INFO=<ID=REF_QUAL,Number=1,Type=Integer,Description="Mean quality of reference base"> ##INFO=<ID=ALT_DP,Number=1,Type=Integer,Description="Depth of alternate base"> ##INFO=<ID=ALT_RV,Number=1,Type=Integer,Description="Deapth of alternate base on reverse reads"> ##INFO=<ID=ALT_QUAL,Number=1,Type=Integer,Description="Mean quality of alternate base"> ##INFO=<ID=AF,Number=1,Type=Float,Description="Frequency of alternate base"> ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">##FILTER=<ID=PASS,Description="Result of p-value <= 0.05"> ##FILTER=<ID=FAIL,Description="Result of p-value > 0.05"> #CHROM POS ID REF ALT QUAL FILTER INFO PRV 1682 . C T . PASS DP=1133;REF_DP=1097;REF_RV=984;REF_QUAL=37;ALT_DP=34;ALT_RV=33;ALT_QUAL=37;AF=0.0300088;DP4=113,984,1,33 PRV 1965 . T G . PASS DP=365;REF_DP=302;REF_RV=113;REF_QUAL=37;ALT_DP=63;ALT_RV=25;ALT_QUAL=37;AF=0.172603;DP4=189,113,38,25 PRV 2781 . T G . PASS DP=408;REF_DP=354;REF_RV=70;REF_QUAL=37;ALT_DP=48;ALT_RV=8;ALT_QUAL=36;AF=0.117647;DP4=284,70,40,8 PRV 2922 . C T . PASS DP=275;REF_DP=264;REF_RV=0;REF_QUAL=36;ALT_DP=11;ALT_RV=0;ALT_QUAL=36;AF=0.04;DP4=264,0,11,0 PRV 3148 . Y T . PASS DP=1707;REF_DP=0;REF_RV=0;REF_QUAL=0;ALT_DP=1324;ALT_RV=264;ALT_QUAL=36;AF=0.77563;DP4=0,0,1060,264 PRV 3148 . Y C . PASS DP=1707;REF_DP=0;REF_RV=0;REF_QUAL=0;ALT_DP=381;ALT_RV=75;ALT_QUAL=36;AF=0.223199;DP4=0,0,306,75 PRV 3295 . A G . PASS DP=1040;REF_DP=1002;REF_RV=1002;REF_QUAL=35;ALT_DP=38;ALT_RV=38;ALT_QUAL=33;AF=0.0365385;DP4=0,1002,0,38 PRV 5680 . C T . PASS DP=35;REF_DP=27;REF_RV=10;REF_QUAL=44;ALT_DP=8;ALT_RV=3;ALT_QUAL=46;AF=0.228571;DP4=17,10,5,3 PRV 7916 . C T . PASS DP=432;REF_DP=351;REF_RV=289;REF_QUAL=36;ALT_DP=81;ALT_RV=78;ALT_QUAL=37;AF=0.1875;DP4=62,289,3,78 PRV 9713 . C T . PASS DP=387;REF_DP=374;REF_RV=0;REF_QUAL=37;ALT_DP=13;ALT_RV=0;ALT_QUAL=35;AF=0.0335917;DP4=374,0,13,0