Mercurial > repos > iuc > ivar_variants
view sanitize_bed.py @ 7:252dfb042563 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 80ad6146e8852fb04fbdbe7b14ab120eee605e3a"
author | iuc |
---|---|
date | Fri, 11 Jun 2021 15:42:14 +0000 |
parents | f95f403841ad |
children | 584beffa972b |
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#!/usr/bin/env python import sys with open(sys.argv[1]) as i: bed_data = i.readlines() sanitized_data = [] try: for record in bed_data: fields = record.split('\t') sanitized_data.append( '\t'.join(fields[:4] + ['60'] + fields[5:]) ) except IndexError: pass # leave column number issue to getmasked else: with open(sys.argv[1], 'w') as o: o.writelines(sanitized_data)