# HG changeset patch # User iuc # Date 1587550069 14400 # Node ID e1a015876aa935af83136401f40898b42a131c17 # Parent c5c9f02b6167c965f9e530d30b6e34d203fcaab5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 2d91c217cf30938da84dea51aa3c45a7789db0fc" diff -r c5c9f02b6167 -r e1a015876aa9 macros.xml --- a/macros.xml Sat Apr 04 12:38:34 2020 -0400 +++ b/macros.xml Wed Apr 22 06:07:49 2020 -0400 @@ -1,5 +1,5 @@ - 1.2 + 1.2.1 ivar diff -r c5c9f02b6167 -r e1a015876aa9 test-data/primer_scheme_bedfiles.loc --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/primer_scheme_bedfiles.loc Wed Apr 22 06:07:49 2020 -0400 @@ -0,0 +1,8 @@ +# this is a tab separated file describing the location of primer schemes used for amplicon +# sequencing (e.g. using the ARTIC SARS-CoV-2 protocol) +# +# the columns are: +# value description path +# +# for example +SARS-CoV-2-ARTICv1 SARS-CoV-2-ARTIC v1 ${__HERE__}/sars-cov-2/SARS-CoV-2-ARTICv1.bed diff -r c5c9f02b6167 -r e1a015876aa9 test-data/sars-cov-2/SARS-CoV-2-ARTICv1.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sars-cov-2/SARS-CoV-2-ARTICv1.bed Wed Apr 22 06:07:49 2020 -0400 @@ -0,0 +1,196 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT 60 + +MN908947.3 385 410 nCoV-2019_1_RIGHT 60 - 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+ diff -r c5c9f02b6167 -r e1a015876aa9 tool_data_table_conf.xml.test --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Wed Apr 22 06:07:49 2020 -0400 @@ -0,0 +1,7 @@ + + + + value, description, path + +
+