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annotate readme.rst @ 1:497c6bb3b717 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
author iuc
date Thu, 18 Jun 2015 12:10:51 -0400
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2c9e5136b416 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 685773d3da40afdc4d14846d4935b3b0a100f56e
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1 JBrowse in Galaxy
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2 =================
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4 JBrowse is a fast, embeddable genome browser built completely with
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5 JavaScript and HTML5
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7 Thus, it makes an ideal fit with Galaxy, especially for use as a
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8 workflow summary. E.g. annotate a genome, then visualise all of the
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9 associated datasets as an interactive HTML page.
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11 Installation
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12 ============
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14 It is recommended to install this wrapper via the Galaxy Tool Shed
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16 Running Locally
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17 ===============
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19 The Galaxy tool interface writes out a yaml file which is then used to generate
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20 the visualizations. An example used during development/testing can be seen in
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21 `test.yml`. The format is in no way rigorously defined and is likely to change
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22 at any time.
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0
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24 History
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25 =======
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27 - 0.1 Initial public release
1
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28 - 0.2 Added support for BAM, Blast, VCF
0
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30 Wrapper License (MIT/BSD Style)
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31 ===============================
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33 Permission to use, copy, modify, and distribute this software and its
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34 documentation with or without modifications and for any purpose and
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35 without fee is hereby granted, provided that any copyright notices
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36 appear in all copies and that both those copyright notices and this
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37 permission notice appear in supporting documentation, and that the names
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38 of the contributors or copyright holders not be used in advertising or
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39 publicity pertaining to distribution of the software without specific
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40 prior permission.
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42 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
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43 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
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44 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
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45 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT OR
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46 CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF
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47 USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR
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48 OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
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49 PERFORMANCE OF THIS SOFTWARE.