annotate test-data/custom_config/test.xml @ 32:6b774e9d6387 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit df0ef2f7aaf34e585edbf88654fec9dd9e6acff1

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
              <genome path="/tmp/tmpWtvfKr/files/000/dataset_17.dat">
                <metadata>
                  <dataset id="27ee89e2e3d631e0" hid="1"
                      size="171.6 KB"
                      edam_format="format_1929"
                      file_ext="fasta" />
                  <history id="7b55dbb89df8f4e5"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="2881"
                      sequences="1"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="With custom track config" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_18.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="61f03d5eef6f1538" hid="2"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="7b55dbb89df8f4e5"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature2</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                  <displayMode>
                    <text>collapsed</text>
                  </displayMode>
                  <histograms.height>
                    <integer>150</integer>
                  </histograms.height>
                  <maxFeatureScreenDensity>
                    <float>0.1</float>
                  </maxFeatureScreenDensity>
                  <style.strandArrow>
                    <boolean>false</boolean>
                  </style.strandArrow>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <topLevelFeatures>mRNA</topLevelFeatures>
                    <index>false</index>
                </gff>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        BlastView="True"
        theme=""
        />
</root>