annotate test-data/menus/test.xml @ 24:fa30df9b79c2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 309588eae8df8baffaf49fc00fb0d28106109ddf

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
                  <genome path="/tmp/tmpnh6QWY/files/000/dataset_14.dat">
                    <metadata>
                      <dataset id="1ae74d26531588b0" hid="1"
                          size="171.6 KB"
                          edam_format="format_1929"
                          file_ext="fasta" />
                      <history id="8155e4b4bf1581ff"
                          user_email="[e-mail]"
                          user_id="2"
                          display_name="test_history"/>
                      <metadata
                          dbkey="hg17"
                          data_lines="2881"
                          sequences="1"
                          />
                      <tool
                          tool_id="upload1"
                          tool_version="1.1.4"
                          />
                    </metadata>
                  </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost:8080</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="With menu or index" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpnh6QWY/files/000/dataset_15.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="440a6c2b5d9efe20" hid="2"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="hg17"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      column_names=""
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.4"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                  <menu>
                    <action>iframeDialog</action>
                      <label>Some menu item</label>
                      <title>Frame title</title>
                      <url>https://example.com/#!/?id={name}&amp;q={type}&amp;z=&quot;{end}&quot;</url>
                      <iconClass>dijitIconNewTask</iconClass>
                  </menu>
                  <menu>
                    <action>newWindow</action>
                      <label>Another menu item</label>
                      <title>Frame title 2</title>
                      <url>https://example.com/#!/?id={name}&amp;q={type}&amp;z=&quot;{end}&quot;</url>
                      <iconClass>dijitIconBookmark</iconClass>
                  </menu>
                </menus>

                <gff>
                    <trackType>JBrowse/View/Track/CanvasFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="With menu or index" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpnh6QWY/files/000/dataset_15.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="440a6c2b5d9efe20" hid="2"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="[e-mail]"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="hg17"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      column_names=""
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.4"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>

                <gff>
                    <trackType>JBrowse/View/Track/CanvasFeatures</trackType>
                    <index>true</index>
                </gff>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        theme=""
        />
</root>