comparison gff3_rebase.py @ 14:18be2d72fdee draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0bfb0de98c918860c21808e8832caad9f0535975

13:69c5e9c0add0

        GFF.write([rec], sys.stdout)


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='rebase gff3 features against parent locations', epilog="")
    parser.add_argument('parent', type=file, help='Parent GFF3 annotations')
    parser.add_argument('child', help='Child GFF3 annotations to rebase against parent')
    parser.add_argument('--interpro', action='store_true',
                        help='Interpro specific modifications')
    parser.add_argument('--protein2dna', action='store_true',
                        help='Map protein translated results to original DNA data')
    args = parser.parse_args()

14:18be2d72fdee

        GFF.write([rec], sys.stdout)


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='rebase gff3 features against parent locations', epilog="")
    parser.add_argument('parent', type=argparse.FileType('r'), help='Parent GFF3 annotations')
    parser.add_argument('child', type=argparse.FileType('r'), help='Child GFF3 annotations to rebase against parent')
    parser.add_argument('--interpro', action='store_true',
                        help='Interpro specific modifications')
    parser.add_argument('--protein2dna', action='store_true',
                        help='Map protein translated results to original DNA data')
    args = parser.parse_args()