Mercurial > repos > iuc > jbrowse

comparison jbrowse-fromdir.xml @ 25:1cfc579079a6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
author iuc
date Tue, 29 Jan 2019 05:34:16 -0500
parents 5f70e7fe6077
children 3235aeb45c22
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24:fa30df9b79c2 25:1cfc579079a6
2 <description>upgrades the bare data directory to a full JBrowse instance</description> 2 <description>upgrades the bare data directory to a full JBrowse instance</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio"/> 7 <command detect_errors="exit_code"><![CDATA[
8 <command><![CDATA[
9 ## Create output directory 8 ## Create output directory
10 mkdir -p $output.files_path && 9 mkdir -p $output.files_path &&
11 ## Copy in jbrowse 10 ## Copy in jbrowse
12 cp -R \${JBROWSE_SOURCE_DIR}/* $output.files_path/ && 11 cp -R \${JBROWSE_SOURCE_DIR}/* $output.files_path/ &&
13 12