comparison macros.xml @ 27:61ce21e36cb5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0c51a106c04c2f56f5a172dd74c8494687870e46

26:08776ba76cf5

      <requirement type="package" version="0.2.6">tabix</requirement>
      <yield/>
    </requirements>
  </xml>
  <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
  <token name="@WRAPPER_VERSION@">galaxy0</token>
  <token name="@ATTRIBUTION@"><![CDATA[
**Attribution**

This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche
]]>

  <xml name="citations">
    <citations>
      <citation type="doi">10.1101/gr.094607.109</citation>
    </citations>
  </xml>
</macros>

27:61ce21e36cb5

      <requirement type="package" version="0.2.6">tabix</requirement>
      <yield/>
    </requirements>
  </xml>
  <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
  <token name="@WRAPPER_VERSION@">galaxy1</token>
  <token name="@ATTRIBUTION@"><![CDATA[
**Attribution**

This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche
]]>

  <xml name="citations">
    <citations>
      <citation type="doi">10.1101/gr.094607.109</citation>
    </citations>
  </xml>

  <xml name="canvas_options">
      <section name="canvas_options" title="CanvasFeatures Options [Advanced]" expanded="false">
          <param label="Transcript type"
                 name="transcriptType"
                 type="text"
                 value=""
                 help="If your input files represents transcripts with features not named 'mRNA', give the alternate name here (e.g. 'transcript')"
                 optional="True"/>
          <param label="Subfeatures type"
                 name="subParts"
                 type="text"
                 value=""
                 help="If you have 'exons' but no corresponding 'CDS' features, specify here the subfeatures that should be displayed (e.g. 'exon')"
                 optional="True"/>
          <param label="Implied UTRs"
                 name="impliedUTRs"
                 type="boolean"
                 checked="false"
                 truevalue="true"
                 falsevalue="false"
                 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/>
      </section>
  </xml>

  <xml name="html_options">
      <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false">
          <param label="Top level features"
                 name="topLevelFeatures"
                 type="text"
                 value="mRNA"
                 help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA otherwise exons will not be rendered."
                 optional="True"/>
      </section>
  </xml>
</macros>