Mercurial > repos > iuc > jbrowse
comparison jbrowse.xml @ 13:69c5e9c0add0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit bb4fe9cc4bc03918afa525569ed36144a819ce79
| author | iuc |
|---|---|
| date | Thu, 09 Feb 2017 12:36:16 -0500 |
| parents | db5fe5a3176a |
| children | b5c5470d7c09 |
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| 12:db5fe5a3176a | 13:69c5e9c0add0 |
|---|---|
| 224 #if str($track.data_format.track_config.canvas_options.subParts) != "": | 224 #if str($track.data_format.track_config.canvas_options.subParts) != "": |
| 225 <subParts>${track.data_format.track_config.canvas_options.subParts}</subParts> | 225 <subParts>${track.data_format.track_config.canvas_options.subParts}</subParts> |
| 226 #end if | 226 #end if |
| 227 #if str($track.data_format.track_config.canvas_options.impliedUTRs) != "false": | 227 #if str($track.data_format.track_config.canvas_options.impliedUTRs) != "false": |
| 228 <impliedUTRs>${track.data_format.track_config.canvas_options.impliedUTRs}</impliedUTRs> | 228 <impliedUTRs>${track.data_format.track_config.canvas_options.impliedUTRs}</impliedUTRs> |
| 229 #end if | |
| 230 #else if $track.data_format.track_config.track_class == 'JBrowse/View/Track/HTMLFeatures': | |
| 231 #if str($track.data_format.track_config.html_options.transcriptType) != "": | |
| 232 <transcriptType>${track.data_format.track_config.html_options.transcriptType}</transcriptType> | |
| 229 #end if | 233 #end if |
| 230 #end if | 234 #end if |
| 231 #if $track.data_format.match_part.match_part_select: | 235 #if $track.data_format.match_part.match_part_select: |
| 232 <match>${track.data_format.match_part.name}</match> | 236 <match>${track.data_format.match_part.name}</match> |
| 233 #end if | 237 #end if |
| 418 truevalue="true" | 422 truevalue="true" |
| 419 falsevalue="false" | 423 falsevalue="false" |
| 420 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/> | 424 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/> |
| 421 </section> | 425 </section> |
| 422 </when> | 426 </when> |
| 423 <when value="JBrowse/View/Track/HTMLFeatures" /> | 427 <when value="JBrowse/View/Track/HTMLFeatures"> |
| 428 <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false"> | |
| 429 <param label="Transcript type" | |
| 430 name="transcriptType" | |
| 431 type="text" | |
| 432 value="" | |
| 433 help="If your input files represents transcripts, give the name of the corresponding features here (e.g. 'mRNA' or 'transcript')" | |
| 434 optional="True"/> | |
| 435 </section> | |
| 436 </when> | |
| 424 </conditional> | 437 </conditional> |
| 425 <expand macro="track_styling" /> | 438 <expand macro="track_styling" /> |
| 426 <expand macro="color_selection" /> | 439 <expand macro="color_selection" /> |
| 427 <expand macro="track_menu" /> | 440 <expand macro="track_menu" /> |
| 428 <expand macro="track_display" /> | 441 <expand macro="track_display" /> |