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comparison test-data/index.html @ 3:7342f467507b draft

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Uploaded v0.4 of JBrowse
author iuc
date Thu, 31 Dec 2015 13:58:43 -0500
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2:b6a0e126dbee 3:7342f467507b
1 <!DOCTYPE html>
2 <html>
3 <head>
4 <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
5 <title>JBrowse</title>
6 <link rel="stylesheet" type="text/css" href="css/genome.css">
7 </head>
8 <body>
9
10 <script type="text/javascript">
11 // jshint unused: false
12 var dojoConfig = {
13 async: true,
14 baseUrl: './src',
15 has: {
16 'host-node': false // Prevent dojo from being fooled by Electron
17 }
18 };
19 // Move Electron's require out before loading Dojo
20 if(window.process&&process.versions&&process.versions.electron) {
21 window.electronRequire = require;
22 delete window.require;
23 }
24 </script>
25 <script type="text/javascript" src="src/dojo/dojo.js"></script>
26 <script type="text/javascript" src="src/JBrowse/init.js"></script>
27 <script type="text/javascript">
28 window.onerror=function(msg){
29 if( document.body )
30 document.body.setAttribute("JSError",msg);
31 }
32
33 // puts the main Browser object in this for convenience. feel
34 // free to move it into function scope if you want to keep it
35 // out of the global namespace
36 var JBrowse;
37 require(['JBrowse/Browser', 'dojo/io-query', 'dojo/json' ],
38 function (Browser,ioQuery,JSON) {
39 // the initial configuration of this JBrowse
40 // instance
41
42 // NOTE: this initial config is the same as any
43 // other JBrowse config in any other file. this
44 // one just sets defaults from URL query params.
45 // If you are embedding JBrowse in some other app,
46 // you might as well just set this initial config
47 // to something like { include: '../my/dynamic/conf.json' },
48 // or you could put the entire
49 // dynamically-generated JBrowse config here.
50
51 // parse the query vars in the page URL
52 var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );
53
54 var config = {
55 containerID: "GenomeBrowser",
56
57 dataRoot: queryParams.data,
58 queryParams: queryParams,
59 location: queryParams.loc,
60 forceTracks: queryParams.tracks,
61 initialHighlight: queryParams.highlight,
62 show_nav: queryParams.nav,
63 show_tracklist: queryParams.tracklist,
64 show_overview: queryParams.overview,
65 show_menu: queryParams.menu,
66 show_tracklabels: queryParams.tracklabels,
67 highResolutionMode: queryParams.highres,
68 stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } },
69 makeFullViewURL: function( browser ) {
70
71 // the URL for the 'Full view' link
72 // in embedded mode should be the current
73 // view URL, except with 'nav', 'tracklist',
74 // and 'overview' parameters forced to 1.
75
76 return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });
77 },
78 updateBrowserURL: true
79 };
80
81 //if there is ?addFeatures in the query params,
82 //define a store for data from the URL
83 if( queryParams.addFeatures ) {
84 config.stores.url.features = JSON.parse( queryParams.addFeatures );
85 }
86
87 // if there is ?addTracks in the query params, add
88 // those track configurations to our initial
89 // configuration
90 if( queryParams.addTracks ) {
91 config.tracks = JSON.parse( queryParams.addTracks );
92 }
93
94 // if there is ?addStores in the query params, add
95 // those store configurations to our initial
96 // configuration
97 if( queryParams.addStores ) {
98 config.stores = JSON.parse( queryParams.addStores );
99 }
100
101 // create a JBrowse global variable holding the JBrowse instance
102 JBrowse = new Browser( config );
103 });
104 </script>
105
106 </head>
107
108 <body>
109 <div id="GenomeBrowser" style="height: 100%; width: 100%; padding: 0; border: 0;"></div>
110 <div style="display: none">JBrowseDefaultMainPage</div>
111 </body>
112 </html>