comparison macros.xml @ 5:ae9382cfb6ac draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 3bbca939ca8a3298a3a2d6450abb04a96851e1ed

4:d022577ff9cf

        <yield />
      </when>
    </conditional>
  </xml>

  <xml name="jb_color"
      token_label="JBrowse style.color"
      token_name="style_color"
      token_value="goldenrod"
      token_help="Basic color of features. Most glyphs interpret this as the fill color of the rectangle they draw. Color syntax is the same as that used for CSS"

        <option value="RdGy">RdGy: Red - Gray</option>
        <option value="RdYlBu">RdYlBu: Red - Yellow - Blue</option>
        <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option>
        <option value="Spectral">Spectral</option>
    </param>
  </xml>
  <xml name="color_selection_minmax">
    <section name="jbcolor" title="JBrowse Color Options [Advanced]" expanded="false">
      <!-- Abuse auto/manual for bicolor pivot. Means we'll have to handle the
           auto case as well, but may be safe to just say "brewer colors? Pff,

5:ae9382cfb6ac

        <yield />
      </when>
    </conditional>
  </xml>

  <xml name="track_display">
    <param type="select" label="Track Visibility" name="track_visibility">
      <option value="default_off">Off for new users</option>
      <option value="default_on">On for new users</option>
      <option value="force">Force On</option>
      <option value="always">Always On (ignores URL parameters)</option>
    </param>
  </xml>

  <xml name="jb_color"
      token_label="JBrowse style.color"
      token_name="style_color"
      token_value="goldenrod"
      token_help="Basic color of features. Most glyphs interpret this as the fill color of the rectangle they draw. Color syntax is the same as that used for CSS"

        <option value="RdGy">RdGy: Red - Gray</option>
        <option value="RdYlBu">RdYlBu: Red - Yellow - Blue</option>
        <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option>
        <option value="Spectral">Spectral</option>
    </param>
  </xml>
  <xml name="general_options">
    <section name="jbgen" title="General JBrowse Options [Advanced]" expanded="false">
      <param label="Default Location" type="text" name="defaultLocation" value="" help="Initial location to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678'"/>
      <param label="Track Padding" type="integer" value="20" name="trackPadding" help="Spacing between tracks in the genome view, in pixels." />

      <param label="Enable Share Link" name="shareLink" type="boolean" checked="true" truevalue="true" falsevalue="false" />
      <param label="About the Browser" type="text" name="aboutDescription" value="" help="Description of the browser to be used in the 'About' popup" />

      <param label="Show Track List" name="show_tracklist" type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the track list"/>
      <param label="Show Navigation" name="show_nav"       type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the navigation menu"/>
      <param label="Show Overview"   name="show_overview"  type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the overview bar"/>
      <param label="Show Menu"       name="show_menu"      type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the menu bar"/>

      <param label="Hide Genome Options" name="hideGenomeOptions" type="boolean" truevalue="true" falsevalue="false" help="Hide options for opening a sequence file"/>
    </section>
  </xml>
  <xml name="color_selection_minmax">
    <section name="jbcolor" title="JBrowse Color Options [Advanced]" expanded="false">
      <!-- Abuse auto/manual for bicolor pivot. Means we'll have to handle the
           auto case as well, but may be safe to just say "brewer colors? Pff,