comparison blastxml_to_gapped_gff3.py @ 12:db5fe5a3176a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

11:4cbceec1d6b4

        return ""


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Convert Blast XML to gapped GFF3', epilog='')
    parser.add_argument('blastxml', type=file, help='Blast XML Output')
    parser.add_argument('--min_gap', type=int, help='Maximum gap size before generating a new match_part', default=3)
    parser.add_argument('--trim', action='store_true', help='Trim blast hits to be only as long as the parent feature')
    parser.add_argument('--trim_end', action='store_true', help='Cut blast results off at end of gene')
    args = parser.parse_args()

12:db5fe5a3176a

        return ""


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Convert Blast XML to gapped GFF3', epilog='')
    parser.add_argument('blastxml', type=open, help='Blast XML Output')
    parser.add_argument('--min_gap', type=int, help='Maximum gap size before generating a new match_part', default=3)
    parser.add_argument('--trim', action='store_true', help='Trim blast hits to be only as long as the parent feature')
    parser.add_argument('--trim_end', action='store_true', help='Cut blast results off at end of gene')
    args = parser.parse_args()