diff jbrowse.xml @ 34:9de82b4963e6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0a26506563ff9b7fa683d3d0eaa16436c3560908"

--- a/jbrowse.xml	Fri Aug 30 03:36:39 2019 -0400
+++ b/jbrowse.xml	Wed Sep 11 09:40:36 2019 -0400
@@ -673,6 +673,23 @@
       <param name="gencode" value="11" />
       <param name="standalone" value="Data Directory" />
       <repeat name="track_groups">
+        <param name="category" value="Default" />
+        <repeat name="data_tracks">
+            <conditional name="data_format">
+                <param name="data_format_select" value="gene_calls"/>
+                <param name="annotation" value="bed/test-3.bed,bed/test-6.bed"/>
+            </conditional>
+        </repeat>
+      </repeat>
+      <param name="uglyTestingHack" value="enabled" />
+      <output name="output" file="bed/test.xml" lines_diff="32"/>
+    </test>
+    <test>
+      <param name="reference_genome|genome_type_select" value="history"/>
+      <param name="reference_genome|genome" value="merlin.fa"/>
+      <param name="gencode" value="11" />
+      <param name="standalone" value="Data Directory" />
+      <repeat name="track_groups">
         <param name="category" value="Auto Coloured" />
         <repeat name="data_tracks">
             <conditional name="data_format">
@@ -861,7 +878,7 @@
       </repeat>
 
       <param name="uglyTestingHack" value="enabled" />
-      <output name="output" file="gff3/test.xml" lines_diff="170" />
+      <output name="output" file="gff3/test.xml" lines_diff="240" />
     </test>
     <test>
         <param name="reference_genome|genome_type_select" value="history"/>