diff blastxml_to_gapped_gff3.py @ 8:ad4b9d7eae6a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 9a243c616a4a3156347e38fdb5f35863ae5133f9

--- a/blastxml_to_gapped_gff3.py	Sun Jun 26 10:50:15 2016 -0400
+++ b/blastxml_to_gapped_gff3.py	Tue Nov 29 10:55:30 2016 -0500
@@ -1,10 +1,12 @@
 #!/usr/bin/perl
+import argparse
+import copy
+import logging
 import re
 import sys
-import copy
-import argparse
+
 from BCBio import GFF
-import logging
+
 logging.basicConfig(level=logging.INFO)
 log = logging.getLogger(name='blastxml2gff3')
 
@@ -218,7 +220,6 @@
         else:
             log.warn("Bad data: \n\t%s\n\t%s\n\t%s\n" % (query, match, subject))
 
-
         if strict_m:
             if ret == '=' or ret == 'X':
                 ret = 'M'