Mercurial > repos > iuc > jbrowse
view test-data/endpoints/test.xml @ 40:17359b808b01 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 2f072c4183a0d1221fb9d81909aeeafb2dbda892"
author | iuc |
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date | Fri, 21 Aug 2020 04:42:41 -0400 |
parents | 9de82b4963e6 |
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<?xml version="1.0"?> <root> <metadata> <gencode>11</gencode> <genomes> <genome path="/tmp/tmpqkd9zdgq/files/9/5/5/dataset_955a2615-e4c3-4ccc-ae7b-749a589abc12.dat"> <metadata> <dataset id="27a22803849b1486" hid="1" size="171.6 KB" edam_format="format_1929" file_ext="fasta" /> <history id="5449172d6ff5669b" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> <metadata dbkey="?" data_lines="2881" sequences="1" /> <tool tool_id="upload1" tool_version="1.1.6" /> </metadata> </genome> </genomes> <general> <defaultLocation></defaultLocation> <trackPadding>20</trackPadding> <shareLink>true</shareLink> <aboutDescription></aboutDescription> <show_tracklist>true</show_tracklist> <show_nav>true</show_nav> <show_overview>true</show_overview> <show_menu>true</show_menu> <hideGenomeOptions>false</hideGenomeOptions> </general> <galaxyUrl>http://localhost</galaxyUrl> </metadata> <tracks> <track cat="External endpoints" format="rest" visibility="default_off"> <options> <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> <className>feature</className> <description>Hit_titles</description> <label>description</label> <height>600px</height> <maxHeight>600</maxHeight> </style> <scaling> <method>ignore</method> <scheme> <color>__auto__</color> </scheme> </scaling> <menus> </menus> <label>Rest api</label> <rest> <url>http://example.org.external/rest_api/</url> </rest> </options> </track> <track cat="External endpoints" format="sparql" visibility="default_off"> <options> <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> <className>feature</className> <description>Hit_titles</description> <label>description</label> <height>600px</height> <maxHeight>600</maxHeight> </style> <scaling> <method>ignore</method> <scheme> <color>__auto__</color> </scheme> </scaling> <menus> </menus> <label>Sparql endpoint</label> <sparql> <url>http://example.org.external/sparql/</url> <query> DEFINE sql:select-option 'order' prefix rdf: __lt__http://www.w3.org/1999/02/22-rdf-syntax-ns#__gt__ select ?start, ?end, IF( ?faldo_type = faldo:ForwardStrandPosition, 1, IF( ?faldo_type = faldo:ReverseStrandPosition, -1, 0 ) ) as ?strand, str(?obj_type_name) as ?type, str(?label) as ?name, str(?obj_name) as ?description, ?obj as ?uniqueID, ?parent as ?parentUniqueID where { values ?faldo_type { faldo:ForwardStrandPosition faldo:ReverseStrandPosition faldo:BothStrandsPosition } }</query> </sparql> </options> </track> </tracks> <plugins ComboTrackSelector="" Bookmarks="" GCContent="" BlastView="True" theme="" /> </root>