Mercurial > repos > iuc > jbrowse
view test-data/gff3/test.xml @ 7:1e74f16adaa1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 942848a0ccd21064ad5d9ee237d1442a5ef47664
author | iuc |
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date | Sun, 26 Jun 2016 10:50:15 -0400 |
parents | ae9382cfb6ac |
children | ad4b9d7eae6a |
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<?xml version="1.0"?> <root> <metadata> <gencode>11</gencode> <genomes> <genome>test-data/merlin.fa</genome> </genomes> <general> <defaultLocation></defaultLocation> <trackPadding>40</trackPadding> <shareLink>true</shareLink> <aboutDescription></aboutDescription> <show_tracklist>true</show_tracklist> <show_nav>true</show_nav> <show_overview>false</show_overview> <show_menu>true</show_menu> <hideGenomeOptions>false</hideGenomeOptions> </general> </metadata> <tracks> <track cat="Auto Coloured" format="gene_calls" visibility="default_on"> <files> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="A"/> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="B"/> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="C"/> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="D"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>ignore</method> <scheme> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Ignore Scale" format="gene_calls"> <files> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="Fixed Colour"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>ignore</method> <scheme> <color>#ff00ff</color> </scheme> </scaling> </options> </track> <track cat="Scaled Colour" format="gene_calls"> <files> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="Linear, Auto-bounds"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>score</method> <algo>linear</algo> <scales> <type>__auto__</type> </scales> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Scaled Colour" format="gene_calls"> <files> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="Linear, Auto-bounds, Fixed Color"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>score</method> <algo>linear</algo> <scales> <type>__auto__</type> </scales> <scheme> <type>opacity</type> <color>#0000ff</color> </scheme> </scaling> </options> </track> <track cat="Scaled Colour" format="gene_calls"> <files> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="Linear, Manual Bounds"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>score</method> <algo>linear</algo> <scales> <type>manual</type> <min>0</min> <max>1000</max> </scales> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Scaled Colour" format="gene_calls"> <files> <trackFile path="test-data/gff3/1.gff" ext="gff3" label="Linear, Manual Bounds, Fixed Color"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>score</method> <algo>linear</algo> <scales> <type>manual</type> <min>0</min> <max>1000</max> </scales> <scheme> <type>opacity</type> <color>#ff0000</color> </scheme> </scaling> </options> </track> <track cat="Realistic" format="gene_calls"> <files> <trackFile path="test-data/gff3/interpro.gff" ext="gff3" label="Interpro data"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> </gff> <scaling> <method>ignore</method> <scheme> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Realistic" format="gene_calls"> <files> <trackFile path="test-data/gff3/2.gff" ext="gff3" label="Match/Match Part"/> </files> <options> <style> <className>feature</className> <description>feature</description> <label>name,id</label> <height>100px</height> </style> <gff> <match>cDNA_match</match> </gff> <scaling> <method>ignore</method> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> </tracks> </root>