# HG changeset patch
# User iuc
# Date 1536664304 14400
# Node ID 1c718d8b3532c47905bf49410422024a10591b9c
# Parent  558d652cd681eb0896880b6a0b6aa5bb6fff609c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 9cac72c004cc7ef57be997e2fdafb3b1839a300f

diff -r 558d652cd681 -r 1c718d8b3532 jbrowse.py
--- a/jbrowse.py	Thu Aug 30 11:43:59 2018 -0400
+++ b/jbrowse.py	Tue Sep 11 07:11:44 2018 -0400
@@ -572,7 +572,9 @@
 
         if 'match' in gffOpts:
             config['glyph'] = 'JBrowse/View/FeatureGlyph/Segments'
-            cmd += ['--type', gffOpts['match']]
+            if bool(gffOpts['match']):
+                # Can be empty for CanvasFeatures = will take all by default
+                cmd += ['--type', gffOpts['match']]
 
         cmd += ['--clientConfig', json.dumps(clientConfig),
                 ]
diff -r 558d652cd681 -r 1c718d8b3532 jbrowse.xml
--- a/jbrowse.xml	Thu Aug 30 11:43:59 2018 -0400
+++ b/jbrowse.xml	Tue Sep 11 07:11:44 2018 -0400
@@ -451,8 +451,8 @@
                                name="name"
                                type="text"
                                value="match"
-                               help="Match_parts have several options for the parent feature type, such as cDNA_match, match, translated_nucleotide_match, etc. Please select the appropriate one here"
-                               optional="False"/>
+                               help="Match_parts have several options for the parent feature type, such as cDNA_match, match, translated_nucleotide_match, etc. Please select the appropriate one here. You can leave empty to try autodetection (only works with CanvasFeatures track type)."
+                               optional="True"/>
                     </when>
                     <when value="false" />
                 </conditional>
diff -r 558d652cd681 -r 1c718d8b3532 macros.xml
--- a/macros.xml	Thu Aug 30 11:43:59 2018 -0400
+++ b/macros.xml	Tue Sep 11 07:11:44 2018 -0400
@@ -13,7 +13,7 @@
     </requirements>
   </xml>
   <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
-  <token name="@WRAPPER_VERSION@">galaxy0</token>
+  <token name="@WRAPPER_VERSION@">galaxy1</token>
   <xml name="stdio">
     <stdio>
       <exit_code range="1:"/>