# HG changeset patch
# User iuc
# Date 1554989700 14400
# Node ID ca2def38369cbf97bec05fca4850d5024ba984da
# Parent  112eb40ba6cf053eb0cad757cf0306ef2b7bc8b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 74554507efb46fb40ce6e12f0b73425e52ec0977

diff -r 112eb40ba6cf -r ca2def38369c jbrowse.xml
--- a/jbrowse.xml	Fri Apr 05 07:53:24 2019 -0400
+++ b/jbrowse.xml	Thu Apr 11 09:35:00 2019 -0400
@@ -130,7 +130,7 @@
                       display_name="${dataset.history.get_display_name()}"/>
                   <metadata
                     #for (key, value) in $dataset.get_metadata().items():
-                    #if "_types" not in $key and $value is not None and len(str($value)) < 20000:
+                    #if "_types" not in $key and $value is not None and len(str($value)) < 5000:
                       ${key}="${value}"
                     #end if
                     #end for
@@ -482,7 +482,7 @@
                     </when>
                 </conditional>
                 <expand macro="track_styling"
-                        classname="feature2"
+                        classname="feature"
                         label="product,name,id"
                         description="note,description"
                         height="10px"/>
diff -r 112eb40ba6cf -r ca2def38369c macros.xml
--- a/macros.xml	Fri Apr 05 07:53:24 2019 -0400
+++ b/macros.xml	Thu Apr 11 09:35:00 2019 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-  <token name="@TOOL_VERSION@">1.16.2</token>
+  <token name="@TOOL_VERSION@">1.16.4</token>
   <xml name="requirements">
     <requirements>
       <requirement type="package" version="@TOOL_VERSION@">jbrowse</requirement>
@@ -415,8 +415,7 @@
           <param label="Top level features"
                  name="topLevelFeatures"
                  type="text"
-                 value="mRNA"
-                 help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA otherwise exons will not be rendered."
+                 help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA if exons don't render."
                  optional="True"/>
       </section>
   </xml>
diff -r 112eb40ba6cf -r ca2def38369c readme.rst
--- a/readme.rst	Fri Apr 05 07:53:24 2019 -0400
+++ b/readme.rst	Thu Apr 11 09:35:00 2019 -0400
@@ -25,6 +25,12 @@
 History
 =======
 
+- 1.16.4+galaxy0
+
+    - UPDATED to JBrowse 1.16.4
+    - ADDED filter too big metadata
+    - CHANGED default value for topLevelFeatures (gene subfeatures are now inferred) and style.className (feature style was fixed)
+
 - 1.16.2+galaxy0
 
     - UPDATED to JBrowse 1.16.2
diff -r 112eb40ba6cf -r ca2def38369c test-data/gff3/test.xml
--- a/test-data/gff3/test.xml	Fri Apr 05 07:53:24 2019 -0400
+++ b/test-data/gff3/test.xml	Thu Apr 11 09:35:00 2019 -0400
@@ -144,7 +144,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -198,7 +198,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -252,7 +252,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -312,7 +312,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -372,7 +372,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -434,7 +434,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -496,7 +496,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -550,7 +550,7 @@
                 <style>
                     <overridePlugins>False</overridePlugins>
                     <overrideDraggable>False</overrideDraggable>
-                    <className>feature2</className>
+                    <className>feature</className>
                     <description>note,description</description>
                     <label>product,name,id</label>
                     <height>10px</height>
@@ -581,4 +581,4 @@
         BlastView="True"
         theme=""
         />
-</root>
\ No newline at end of file
+</root>