annotate tool-data/all_fasta.loc.sample @ 2:70efe7b19018 draft

"planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/jvarkit commit dd0745115487da9c9e9f51c7049619263a055b8e"

#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
#<unique_build_id>	<dbkey>	<display_name>	<file_path>
#
#So, all_fasta.loc could look something like this:
#
#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3	/path/to/genome/apiMel3/apiMel3.fa
#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/path/to/genome/hg19/hg19canon.fa
#hg19full	hg19	Human (Homo sapiens): hg19 Full	/path/to/genome/hg19/hg19full.fa
#sars-cov-2	SARS-CoV-2	SARS-CoV-2 (MN908947.3)	/depot/data/MN908947_3_Wuhan-Hu-1.fasta
#
#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#
#