Mercurial > repos > iuc > kallisto_quant
comparison kallisto_quant.xml @ 6:60f888039fb2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit f84c314bc721b5b0c7be10eaf287b1830caca241"
| author | iuc |
|---|---|
| date | Thu, 26 Sep 2019 09:12:20 -0400 |
| parents | 10c98fab6c5a |
| children | c971db6f0fe5 |
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| 5:10c98fab6c5a | 6:60f888039fb2 |
|---|---|
| 38 #end if | 38 #end if |
| 39 #set $reads = "'%s' '%s'" % ($forward_reads, $reverse_reads) | 39 #set $reads = "'%s' '%s'" % ($forward_reads, $reverse_reads) |
| 40 $reads | 40 $reads |
| 41 #end if | 41 #end if |
| 42 #if $pseudobam: | 42 #if $pseudobam: |
| 43 | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -o '$pseudobam_output' - | 43 | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -T "\${TMPDIR:-.}" -o '$pseudobam_output' - |
| 44 #end if | 44 #end if |
| 45 && cat run_info.json | 45 && cat run_info.json |
| 46 ]]> | 46 ]]> |
| 47 </command> | 47 </command> |
| 48 <inputs> | 48 <inputs> |