Mercurial > repos > iuc > kegg_pathways_completeness
changeset 0:9933e2f91584 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/kegg_pathways_completeness commit 7352c3ea390d3cd3afe19c0af5be59d8cfbaa7cd
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/kegg_pathways_completeness.xml Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,135 @@ +<tool id="kegg_pathways_completeness" name="Calculate KEGG Pathways completeness" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>Compute KEGG pathway/module completeness from KOs or per-contig annotation</description> + <macros> + <token name="@TOOL_VERSION@">1.3.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">24.0</token> + </macros> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">kegg-pathways-completeness</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + give_completeness + #if $usr_ref_files.definitions + --definitions '$usr_ref_files.definitions' + #end if + #if $usr_ref_files.names + --names '$usr_ref_files.names' + #end if + #if $usr_ref_files.classes + --classes '$usr_ref_files.classes' + #end if + $w + $p + #if str($input_type.select_input_type) == "input_list" + -l '$l' + #else + -i '$i' + #if $input_type.m + $input_type.m && + mv summary.kegg_contigs* $kegg_contig_table + #end if + #end if + && + mv summary.kegg_pathways* $kegg_pathways_table + ]]></command> + <inputs> + <conditional name="input_type"> + <param name="select_input_type" type="select" label="Select input format" help="See the Help section below for examples"> + <option value="input_file">Table with one pathway per row</option> + <option value="input_list">Text file containing a comma-separated list of KOs</option> + </param> + <when value="input_file"> + <param argument="-i" label="Input file" type="data" format="tabular"/> + <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Creates per-contig summary table"/> + </when> + <when value="input_list"> + <param argument="-l" label="Input list" type="data" format="txt"/> + </when> + </conditional> + <section name="usr_ref_files" title="Custom Reference Files" help="Optionally, provide your own KEGG reference files instead of using the default KEGG database"> + <param argument="--definitions" label="All modules definitions" type="data" format="txt" optional="true"/> + <param argument="--names" label="Modules names" type="data" format="txt" optional="true"/> + <param argument="--classes" label="Modules classes" type="data" format="txt" optional="true"/> + </section> + <param argument="-w" type="boolean" truevalue="-w" falsevalue="" checked="false" label="Add weights for each KO in output"/> + <param argument="-p" type="boolean" truevalue="-p" falsevalue="" checked="false" label="Create images with pathways completeness"/> + </inputs> + <outputs> + <data name="kegg_pathways_table" format="tsv" label="${tool.name} on ${on_string}: KEGG pathway completness table"/> + <data name="kegg_contig_table" format="tsv" label="${tool.name} on ${on_string}: KEGG contig pathway completness table"> + <filter>input_type['select_input_type'] == "input_file" and input_type['m'] is True</filter> + </data> + <collection name="pathway_plots" type="list" label="${tool.name} on ${on_string}: Pathway plots" format="png"> + <filter>p is True</filter> + <discover_datasets pattern="(?P<designation>.+).png" directory="pathways_plots"/> + </collection> + </outputs> + <tests> + <test expect_num_outputs="3"> + <conditional name="input_type"> + <param name="select_input_type" value="input_file"/> + <param name="i" value="input_file.tabular"/> + <param name="m" value="true"/> + </conditional> + <section name="usr_ref_files"> + <param name="definitions" value="all_pathways.txt"/> + <param name="names" value="all_pathways_names.txt"/> + <param name="classes" value="all_pathways_class.txt"/> + </section> + <param name="w" value="true"/> + <param name="p" value="true"/> + <output name="kegg_pathways_table" file="summary.kegg_pathways.with_wreights.tsv" ftype="tsv"/> + <output name="kegg_pathways_table" file="summary.kegg_contigs.with_weights.tsv" ftype="tsv"/> + <output_collection name="pathway_plots" type="list" count="9"> + <element name="M00003" file="pathway_plots/M00003.png" ftype="png"/> + <element name="M00017" file="pathway_plots/M00017.png" ftype="png"/> + <element name="M00018" file="pathway_plots/M00018.png" ftype="png"/> + <element name="M00082" file="pathway_plots/M00082.png" ftype="png"/> + <element name="M00165" file="pathway_plots/M00165.png" ftype="png"/> + <element name="M00873" file="pathway_plots/M00873.png" ftype="png"/> + <element name="M00874" file="pathway_plots/M00874.png" ftype="png"/> + <element name="M00885" file="pathway_plots/M00885.png" ftype="png"/> + <element name="M00886" file="pathway_plots/M00886.png" ftype="png"/> + </output_collection> + </test> + <test expect_num_outputs="1"> + <conditional name="input_type"> + <param name="select_input_type" value="input_list"/> + <param name="l" value="input_list.txt"/> + </conditional> + <output name="kegg_pathways_table" file="summary.kegg_pathways.tsv" ftype="tsv"/> + </test> + </tests> + <help><![CDATA[ + **Compute KEGG pathway/module completeness from KOs or per-contig annotations** + + Input formats: + + * Example input file (tabular, one pathway per row): + + contig1 K00812 K12252 K00003 + + contig1 K02990 K19302 K00645 + + * Example KO list file (comma-separated): + + K00001,K00002,K00123,K00942 + + **Tool license**: `Apache License 2.0 <https://raw.githubusercontent.com/EBI-Metagenomics/kegg-pathways-completeness-tool/refs/heads/master/LICENSE>`_ + ]]></help> + <creator> + <person givenName="Rand" familyName="Zoabi" url="https://github.com/RZ9082" identifier="https://orcid.org/0009-0000-2501-8053"/> + </creator> + <citations> + <citation type="bibtex"> + @misc{kegg-pathways-completeness, + author = {{EBI‐Metagenomics}}, + title = {kegg-pathways-completeness-tool}, + howpublished = {\url{https://github.com/EBI-Metagenomics/kegg-pathways-completeness-tool}}, + note = {Accessed: 2025-12-05}, + year = {2024} + } + </citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/all_pathways.txt Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,557 @@ +M00001:(K00844,K12407,K00845,K25026,K00886,K08074,K00918) (K01810,K06859,K13810,K15916) (K00850,K16370,K21071,K24182,K00918) (K01623,K01624,K11645,K16305,K16306) K01803 ((K00134,K00150) K00927,K11389) (K01834,K15633,K15634,K15635) (K01689,K27394) (K00873,K12406) +M00002:K01803 ((K00134,K00150) K00927,K11389) (K01834,K15633,K15634,K15635) (K01689,K27394) (K00873,K12406) +M00003:(K01596,K01610) (K01689,K27394) (K01834,K15633,K15634,K15635) K00927 (K00134,K00150) K01803 ((K01623,K01624,K11645) (K03841,K02446,K11532,K01086,K04041),K01622) +M00004:(K13937,((K00036,K19243) (K01057,K07404))) K00033 K01783 (K01807,K01808) K00615 ((K00616 (K01810,K06859,K15916)),K13810) +M00005:K00948 +M00006:(K13937,((K00036,K19243) (K01057,K07404))) K00033 +M00007:K00615 (K00616,K13810) K01783 (K01807,K01808) +M00008:K00036 (K01057,K07404) K01690 K01625 +M00009:(K01647,K05942,K01659) (K01681,K27802,K01682) (K00031,K00030) ((K00164+K00658,K01616)+K00382,K00174+K00175-K00177-K00176) (K01902+K01903,K01899+K01900,K18118) (K00234+K00235+K00236+(K00237,K25801),K00239+K00240+K00241-(K00242,K18859,K18860),K00244+K00245+K00246-K00247) (K01676,K01679,K01677+K01678) (K00026,K00025,K00024,K00116) +M00010:(K01647,K05942,K01659) (K01681,K27802,K01682) (K00031,K00030) +M00011:((K00164+K00658,K01616)+K00382,K00174+K00175-K00177-K00176) (K01902+K01903,K01899+K01900,K18118) (K00234+K00235+K00236+(K00237,K25801),K00239+K00240+K00241-(K00242,K18859,K18860),K00244+K00245+K00246-K00247) (K01676,K01679,K01677+K01678) (K00026,K00025,K00024,K00116) +M00012:(K01647,K01659) (K01681,K27802,K01682) K01637 (K01638,K19282) (K00026,K00025,K00024) +M00013:(K00248,K00232) (K07511,K14729) K05605 K23146 K00140 +M00014:K00012 ((K12447 K16190),(K00699 (K01195,K14756))) K00002 K13247 -- K03331 (K05351,K00008) K00854 +M00015:((K00931 K00147),K12657) K00286 +M00016:(K00928,K12524,K12525,K12526) K00133 K01714 K00215 K00674 (K00821,K14267) K01439 K01778 (K01586,K12526) +M00017:(K00928,K12524,K12525) K00133 (K00003,K12524,K12525) (K00651,K00641) K01739 (K01760,K14155) (K00548,K24042,K00549) +M00018:(K00928,K12524,K12525,K12526) K00133 (K00003,K12524,K12525) (K00872,K02204,K02203) K01733 +M00019:K01652+(K01653,K11258) K00053 K01687 K00826 +M00020:K00058 K00831 (K01079,K02203,K22305,K25528) +M00021:(K00640,K23304) (K01738,K13034,K17069) +M00022:(K01626,K03856,K13853) (((K01735,K13829) ((K03785,K03786) K00014,K13832)),K13830) ((K00891,K13829) (K00800,K24018),K13830) K01736 +M00023:(((K01657+K01658,K13503,K13501,K01656) K00766),K13497) (((K01817,K24017) (K01656,K01609)),K13498,K13501) (K01695+(K01696,K06001),K01694) +M00024:((K01850,K04092,K14187,K04093,K04516,K06208,K06209) (K01713,K04518,K05359),K14170) (K00832,K00838) +M00025:(((K01850,K04092,K14170,K04093,K04516,K06208,K06209) (K04517,K00211)),K14187) (K00832,K00838) +M00026:(K00765-K02502) (K01523 K01496,K11755,K14152) (K01814,K24017) (K02501+K02500,K01663) ((K01693 K00817 (K04486,K05602,K18649)),(K01089 K00817)) (K00013,K14152) +M00027:K01580 (K13524,K07250,K00823,K16871) (K00135,K00139,K17761) +M00028:(K00618,K00619,K14681,K14682,K00620,K22477,K22478) ((K00930,K22478) K00145,K12659) (K00818,K00821) (K01438,K14677,K00620) +M00029:K01948 K00611 K01940 (K01755,K14681) K01476 +M00030:K01655 K17450 K01705 K05824 K00838 K00143 (K00293,K24034) K00290 +M00031:K05826 (K05827 K05828 K05829 K05830 K05831) +M00032:K14157 K14085 K00825 (K15791+K00658+K00382) K00252 (K07514,(K07515,K07511) K00022) +M00033:K00928 K00133 K00836 K06718 K06720 +M00034:K00789 K01611 K00797 ((K01243,K01244) K00899,(K00772,K05810)) K08963 (K16054,K08964 (K09880,K08965 K08966)) K08967 (K00815,K08969,K23977,K00832,K00838) +M00035:K00789 (K00552,K00558,K17398,K17399) K01251 (K01697,K10150) +M00036:K00826 ((K00166+K00167,K11381)+K09699+K00382) (K00253,K00249) (K01968+K01969) (K05607,K13766) K01640 +M00037:K00502 K01593 K00669 K00543 +M00038:(K00453,K00463) (K01432,K14263,K07130) K00486 K01556 K00452 K03392 (K10217,K23234) +M00039:(K10775,K13064) K00487 K01904 K13065 K09754 K00588 K09753 K09755 K13066 (K00083,K22395) +M00040:(K01850,K04092,K14170) (K00832,K15849) (K00220,K24018,K15227) +M00042:(K00505,K00501) K01593 K00503 K00553 +M00043:K00431 +M00044:(K00815,K00838,K00832,K03334) K00457 K00451 K01800 (K01555,K16171) +M00045:K01745 K01712 K01468 (K01479,K00603,K13990,(K05603 K01458)) +M00046:(K00207,K17722+K17723) K01464 (K01431,K06016) +M00047:K00613 K00542 (K00933,K27382) +M00048:K00764 (K01945,K11787,K11788,K13713) (K00601,K11175,K08289,K11787,K01492) (K01952,(K23269+K23264+K23265),(K23270+K23265)) (K01933,K11787,K11788 (K01587,K11808,K01589 K01588)) (K01923,K01587,K13713) K01756 (K00602,(K01492,K06863 K11176)) +M00049:K01939 K01756 (K00939,K18532,K18533,K00944) K00940 +M00050:K00088 K01951 K00942 (K00940,K18533) +M00051:(K11540,(K11541 K01465),((K01954,K01955+K01956) (K00609+K00610,K00608) K01465)) (K00226,K00254,K17828) (K13421,K00762 K01591) +M00052:(K13800,K13809,K09903) (K00940,K18533) K01937 +M00053:(K00525+K00526,K10807+K10808) (K00940,K18533) +M00055:K01001 (K07432+K07441) K03842 K03843 K03844 K03845 K03846 K03847 K03846 K00729 K03848 K03849 K03850 +M00056:K00710 (K00731,K09653) (K00727,K09662,K09663) K00739 +M00057:K00771 K00733 K00734 K10158 +M00058:K00746 (K13499,K00747,K03419) +M00059:(K02369,K02370) (K02366,K02367) (K02368,K02370) (K02576,K02577,K02578,K02579) K01793 +M00060:K00677 K02535 K02536 (K03269,K09949) K00748 K00912 K02527 K02517 K02560 +M00061:K01812 K00040 (K01686,K08323) K00874 (K01625,K17463) +M00063:K06041 K01627 K03270 K00979 +M00064:K03271 (K03272,K21344) K03273 (K03272,K21345) K03274 +M00065:(K03857+K03859+K03858+K03861+K03860+(K11001,K11002)-K09658) K03434 K05283 (K05284+K07541) K07542 K05285 K05286 (K05288+K05287) (K05310+K05287) +M00066:K00720 (K07553,K09905) +M00067:K04628 K01019 +M00068:K01988 K00719 +M00069:K03370 (K03371,K03369) +M00070:K03766 (K07819,K07820,K03877) +M00071:K03766 (K07966,K07967,K07968,K07969) +M00072:K07151+K12666+K12667+K12668+K12670-K12669-K00730-K12691-K26502-K28202 +M00073:K01228 K05546 K23741 K01230 +M00074:K05546 K23741 K01230 K05528 K05529+K05530 K05529+K05531+K05532+K05533+K05534 K05535 +M00075:(K01231 K00736) K00737 (K00738 (K00744,K09661) K13748) (K00717 (K07966,K07967,K07968) (K00778,K00779)) +M00076:-- K01136 K01217 K01135 K01197 K01195 +M00077:K01135 K01197 K01195 K01132 +M00078:(K07964,K07965) K01136 K01217 K01565 K10532 K01205 -- K01195 K01137 +M00079:-- K01132 K12309 K01137 K12373 +M00081:K01051 K01184 K01213 +M00082:(K11262,(K02160+K01961,K11263)+(K01962+K01963,K18472)) (K00665,K00667+K00668,K11533,(K00645 (K00648,K18473))) +M00083:K00665,(K00667 K00668),K11533,((K00647,K09458) K00059 (K02372,K01716,K16363) (K00208,K02371,K10780,K00209)) +M00085:(K07508,K07509) (K00022 K07511,K07515) K07512 +M00086:K01897,K15013,K28161 +M00087:(K00232,K00249,K00255,K06445,K09479) (((K01692,K07511,K13767) (K00022,K07516)),K01825,K01782,K07514,K07515,K10527) (K00632,K07508,K07509,K07513) +M00088:(K00626 K01641 K01640) K00019 K01574 +M00089:(K00629,K13506,K13507,K00630,K13508) (K00655,K13509,K13523,K19007,K13513,K13517,K13519,K14674,K22831) (K01080,K15728,K18693) (K11155,K11160,K14456,K22848,K22849,K27538,K27539) +M00090:(K00866,K14156) K00968 (K00994,K13644) +M00091:K00551,(K16369 K00550),K00570 +M00092:(K00894,K14156) K00967 (K00993,K13644) +M00093:K00981 (K00998,K17103) K01613 +M00094:K00654 K04708 (K04709,K04710,K24621,K24622,K23727,K28195,K28194) K04712 +M00095:K00626 K01641 K00021 K00869 (K00938,K13273) K01597 K01823 +M00096:K01662 K00099 (K00991,K12506) K00919 (K01770,K12506) K03526 K03527 K01823 +M00097:(K02291,K17841) ((K02293 K15744 K00514 K09835),K10027,K15745) +M00098:(K01046,K12298,K16816,K13534,K14073,K14074,K14075,K14076,K22283,K14452,K22284,K14674,K14675,K17900) (K01054,K25824) +M00099:K00654 K04708 (K04709,K04710,K24621,K24622,K23727,K28195,K28194) K04712 (K01441,K12348,K12349) +M00100:K04718 K01634 +M00101:K00801 K00511 K01852 K05917 (K00222,K19532) K07750 K07748 K13373 K09828 K01824 K00227 K00213 +M00102:K00801 K00511 K01852 K05917 K00222 K07750 K07748 K09827 K00559 K09829 K00227 K09831 K00223 +M00103:K07419 K07438 +M00104:K00489 K12408 K07431 K00251 K00037 K00488 K08748 K01796 K10214 K12405 K08764 (K11992,K00659) +M00106:K08748 K00659 +M00107:K00498 K00070 +M00108:K00513 (K00497,K07433) K07433 +M00109:K00512 K00513 K00497 (K15680,K00071) +M00110:K00512 K00070 K07434 +M00112:K09833 (K12502,K18534) K09834 K05928 +M00113:K00454 K01723 K10525 K05894 K10526 K00232 K10527 K07513 -- +M00114:K01809 K17497 K00966 K10046 K14190 K10047 K17744 K00225 +M00115:(K00278,K06989) K03517 K00767 (K00969,K06210) (K01916,K01950) +M00116:K02552 K02551 K08680 K02549 K01911 K01661 K19222 K02548 K03183 +M00117:(K03181,K18240) K03179 K03182+K03186 K18800 K00568 K03185 K03183 (K03184,K06134) +M00118:(K11204+K11205,K01919) (K21456,K01920) +M00119:(K00826 K00606 K00077) K01579 ((K01918,K13799)) +M00120:(K00867,K03525,K01947,K09680) ((K01922,K21977) K01598,K13038) (K02318,(K00954,K02201) K00859) +M00121:K01885 K02492 K01845 K01698 K01749 (K01719,K13542,K13543) K01599 (K00228,K02495) (K00230,K00231,K08973) K01772 +M00122:((K00798,K19221) K02232 (K02225,K02227) K02231) (K00768 (K02226,K22316)) K02233 +M00123:K00652 ((K00833,K19563) K01935,K19562) K01012 +M00124:K03472 K03473 K00831 K00097 K03474 K00275 +M00125:((K01497,K14652) (K01498 K00082,K11752) (K22912,K20860,K20861,K20862,K21063,K21064)) ((K02858,K14652)) (K00794 K00793 (K20884 K22949,K11753)) +M00126:(K01495,K09007,K22391) (K01077,K01113,(K08310,K19965)) ((K13939,(K13940,K01633 K00950) K00796),(K01633 K13941)) (K11754,K20457) (K00287,K13998) +M00127:(K03148+K03154 K03151) (K03150 K03149) (K03147 ((K00941 K00788),K14153,K21219) K00946) +M00128:K06125 K06126 K00591 K18586 K06126 K06127 K28034 K00591 +M00129:K00963 K00012 K00699 K01195 K00002 K01053 K00103 +M00130:(K00888,K19801,K13711) (K00889,K13712) (K01116,K05857,K05858,K05859,K05860,K05861) K00911 +M00131:K01106 K01107 K01109 K01092 +M00132:(K00913,K01765) K00915 K10572 +M00133:((K01584,K01585,K02626) K01480) K01611 K00797 +M00134:K01476,K27545 K01581 +M00135:K00657 K00274 (K00128,K14085,K00149) -- +M00136:K09470 K09471 K09472 K09473 +M00137:K10775 K00487 K01904 K00660 K01859 +M00138:K00475 K13082 K05277 +M00140:K00600 (K01491,(K00300 K01500)) K01938 +M00141:K00600 (K00288,(K13403 K13402)) +M00142:K03878+K03879+K03880+K03881+K03882+K03883+K03884 +M00143:K03934+K03935+K03936+K03937+K03938+K03939+K03940+K03941+K03942+K03943-K03944 +M00144:K00330+(K00331+K00332+K00333,K00331+K13378,K13380)+K00334+K00335+K00336+K00337+K00338+K00339+K00340+(K00341+K00342)+K00343 +M00145:K05574+K05582+K05581+K05579+K05572+K05580+K05578+K05576+K05577+K05575+K05573-K05583-K05584-K05585 +M00146:K03945+K03946+K03947+K03948+K03949+K03950+K03951+K03952+K03953+K03954+K03955+K03956+K11352+K11353 +M00147:K03957+K03958+K03959+K03960+K03961+K03962+K03963+K03964+K03965+K03966+K11351+K03967+K03968 +M00148:K00236+(K00237,K25801)+K00234+K00235 +M00149:K00241+(K00242,K18859,K18860)+K00239+K00240 +M00150:K00244+K00245+K00246+K00247 +M00151:((K00412+K00413,K00410)+K00411),K03886+K03887+K03888,K03890+K03891+K03889 +M00152:K00411+K00412+K00413+K00414+K00415+K00416+K00417+K00418+K00419+K00420 +M00153:K00425+K00426+(K00424,K22501) +M00154:(K02257+K02262+K02256+K02261+K02263+K02264+K02265+K02266+K02267+K02268+K02270-K02271+K02272-K02273+K02258+K02259+K02260) +M00155:K02275+(K02274+K02276,K15408)-(K02277,K27109) +M00156:((K00404+K00405,K15862)+K00407+K00406) +M00157:K02111+K02112+K02113+K02114+K02115+K02108+K02109+K02110 +M00158:K02132+K02133+K02136+K02134+K02135+K02137+K02126+K02127+K02128+K02138+(K02129,K01549)+(K02130,K02139)+K02140+(K02141,K02131)-K02142-K02143+K02125 +M00159:K02117+K02118+K02119+K02120+K02121+K02122+K02107+K02123+K02124 +M00160:K02145+K02147+K02148+K02149+K02150+K02151+K02152+K02144+K02154+(K03661,K02155)+K02146+K02153+K03662 +M00161:K02703+K02706+K02705+K02704+K02707+K02708 +M00162:K02635+K02637+K02634+K02636+K02642+K02643+K03689+K02640 +M00163:K02689+K02690+K02691+K02692+K02693+K02694 +M00165:(K00855,K28462) (K01601-K01602) K00927 (K05298,K00150,K00134) K01803 (K01623,K01624) (K03841,K02446,K11532,K01086) K00615 (K01100,K11532,K01086) (K01807,K01808) K01783 +M00168:K01595 (K00025,K00026,K00024) +M00169:K00029 K01006 +M00170:K01595 K14454 K14455 K01610 +M00171:K01595 K14454 K14455 (K00025,K00026) K00028 (K00814,K14272) K01006 +M00172:K01595 K00051 K00029 K01006 +M00173:(K00169+K00170+K00171+K00172,K03737) ((K01007,K01006) K01595,K01959+K01960,K01958) K00024 (K01676,K01679,K01677+K01678) (K00239+K00240-K00241-K00242,K18556+K18557+K18558+K18559+K18560) (K01902+K01903) (K00174+K00175-K00177-K00176) K00031 (K27802,K01682) (K15230+K15231,K15232+K15233 K15234) +M00174:((K10944+K10945+K10946),(K16157+K16158+K16159+K16160+K16161+K16162)) ((K14028-K14029),K23995) +M00175:K02588+K02586+K02591-K00531,K22896+K22897+K22898+K22899 +M00176:(K00958+K00860,K00955+K00957,K00956+K00957+K00860) K00390 (K00380+K00381,K00392) +M00307:((K00163,K00161+K00162)+K00627+K00382-K13997),K00169+K00170+K00171+(K00172,K00189),K03737 +M00308:K05308 K00874 K01625 (K00134 K00927,K00131,K18978) +M00309:K05308 (K11395,K18127) (K18020+K18021+K18022,K18128,K03738) +M00338:(K01697,K10150) K01758 +M00344:K17100 K00863 K01624 K03841 +M00345:(((K08093,K13812) K08094),K13831) (K00850,K16370,K21071) K01624 +M00346:K00600 K00830 K00018 K11529 K01689 K01595 K00024 K08692+K14067 K08691 +M00356:K14080+K04480+K14081 K00399+K00401+K00402 (K22480+K22481+K22482,K03388+K03389+K03390,K08264+K08265,K03388+K03389+K03390+K14127+(K14126+K14128,K22516+K00125)) +M00357:((K00925 K00625),K01895) (K00193+K00197+K00194) (K00577+K00578+K00579+K00580+K00581-K00582-K00583+K00584) (K00399+K00401+K00402) (K22480+K22481+K22482,K03388+K03389+K03390,K08264+K08265,K03388+K03389+K03390+K14127+(K14126+K14128,K22516+K00125)) +M00358:K08097 K05979 K05884 K13039+K06034 +M00363:K11006 K11007 +M00364:K01823 (K00795,K13789,K13787) +M00365:K01823 K13787 +M00366:K01823 K14066 K00787 K13789 +M00367:K01823 K00787 K00804 +M00368:K00789 (K01762,K20772) K05933 +M00369:K13027 K13029 K13030 +M00370:(K11812,K11813) K11818 K11819 K11820 K11821 +M00371:(K09587,K12639) K09588 K09591 (K12637,K12638) K20623 (K09590,K12640,K25959) +M00372:K09840 K09841 K09842 +M00373:(K00626 K00023 K17865 K14446 K14447 K14448 K14449 K08691 K14451) (K01965+K01966 K05606 K01847) +M00374:(K00169+K00170+K00171+K00172) K01007 K01595 K00024 (K01677+K01678) (K00239+K00240-K00241-K18860) (K01902+K01903) (K15038,K15017) K14465 (K14467,K18861,K25774) K14534 K15016 K00626 +M00375:(K01964+K15037+K15036) K15017 K15039 K15018 K15019 K15020 K05606 (K01848+K01849) (K15038,K15017) K14465 (K14466,K18861,K25774) K14534 K15016 K00626 +M00376:((K02160+K01961+K01962+K01963) K14468 K14469 K15052 K05606 (K01847,K01848+K01849) (K14471+K14472) (K00239+K00240+K00241) K01679) (K08691 K14449 K14470 K09709) +M00377:K00198 (K05299-K15022,K22015+K25123+K25124) K01938 K01491-K01500 K00297-K25007-K25008 K15023 K14138+K00197+K00194 +M00378:(K11780+K11781) K14941 (K11212 K12234) +M00415:(K10247,K10205,K10248,K10249,K10244,K10203,K10250,K15397,K10245,K10246) K10251 K10703 K10258 +M00416:K02827+K02826+K02828+K02829 +M00417:K02297+K02298+K02299+K02300 +M00418:K07540 K07543+K07544 K07545 K07546 K07547+K07548 K07549+K07550 +M00419:K10616+K18293 K10617 K10618 +M00422:K00192+K00195 K00193+K00197+K00194 +M00432:K01649 (K01702,K01703+K01704) K00052 +M00433:K01655 (K17450 K01705,K16792+K16793) K05824 +M00525:K00928 K00133 K01714 K00215 K05822 K00841 K05823 K01778 K01586 +M00526:(K00928,K12524,K12525,K12526) K00133 K01714 K00215 K03340 (K01586,K12526) +M00527:(K00928,K12524,K12525,K12526) K00133 K01714 K00215 K10206 K01778 (K01586,K12526) +M00528:K28504+K10945+K10946 K10535 +M00529:(K00370+K00371+K00374,K02567+K02568) (K00368,K15864) (K04561+K02305) K00376 +M00530:(K00370+K00371+K00374,K02567+K02568) (K00362+K00363,K03385+K15876) +M00531:(K00367,K10534,K00372-K00360) (K00366,K17877,K26139+K26138,K00361) +M00532:((K01601-K01602) K19269 K11517 K03781 (K14272,K00830,K00827) K00600 K00830 (K15893,K15919) K15918) (K00281+K00605+K00382+K02437) +M00533:K00455 K00151 K01826 K05921 +M00534:K14579+K14580+K14578+K14581 K14582 K14583 K14584 K14585 K00152 +M00535:K09011 K01703+K01704 K00052 +M00537:K15757+K15758 K00055 K00141 +M00538:K15760+K15761-K15762+K15763+K15764-K15765 K00055 K00141 +M00539:K10619+K16303+K16304+K18227 K10620 K10621 K10622 K10623 +M00540:K04116 K04117 K07534 K07535 K07536 +M00541:(K04112+K04113+K04114+K04115,K19515+K19516) K07537 K07538 K07539 +M00542:K03221+K03219+K03222+K03226+K03227+K03228+K03229+K03230+K03224+K03225 K12784 K12787 K12785 K12786 K12788 K16041 K16042 +M00543:K08689+K15750+K18087+K18088 K08690 K00462 K10222 +M00544:K15751-K15752-K15753 K15754+K15755 K15756 +M00545:(((K05708+K05709+K05710+K00529) K05711),K05712) K05713 K05714 K02554 K01666 K04073 +M00546:(K00106,K00087+K13479+K13480,K13481+K13482,K11177+K11178+K13483) (K00365,K16838,K16839,K22879) (K13484,K07127 (K13485,K16838,K16840)) (K01466,K16842) K01477 +M00547:K03268+K16268+K18089+K18090 K16269 +M00548:K16249+K16243+K16244+K16242+K16245+K16246 +M00549:(K00844,K00845,K25026,K12407,K00886) (K01835,K15779,K15778) (K00963,K28660,K12447) +M00550:K02821+K02822+K03475 K03476 K03078 K03079 K03077 +M00551:K05549+K05550+K05784 K05783 +M00552:K01684 K00883 K01631 K00134 K00927 +M00554:K00849 K00965 +M00555:(K17755,((K00108,K11440,K00499) (K00130,K14085))) +M00563:K14082 ((K16177-K16176),(K16179-K16178),(K14084-K14083)) K00399+K00401+K00402 (K22480+K22481+K22482,K03388+K03389+K03390,K08264+K08265,K03388+K03389+K03390+K14127+(K14126+K14128,K22516+K00125)) +M00564:K15842 K12086 -K12087 K12088 K12089 K12090 K03196 K12091 -K12092 K12093 K12094 K12095 K12096 K12097 K12098 -K12099 -K12100 K12101 K12102 K12103 K12104 K12105 K12106 K12107 K12108 K12109 K12110 +M00565:K00975 K00703 (K00700,K16149) K01214 K06044 K01236 +M00567:(K00200+K00201+K00202+K00203-K11261+(K00205,K11260,K00204)) K00672 K01499 (K00319,K13942) K00320 (K00577+K00578+K00579+K00580+K00581-K00582-K00583+K00584) (K00399+K00401+K00402) (K22480+K22481+K22482,K03388+K03389+K03390,K08264+K08265,K03388+K03389+K03390+K14127+(K14126+K14128,K22516+K00125)) +M00568:K03381 K01856 K03464 (K01055,K14727) +M00569:(K00446,K07104) ((K10217 K01821 K01617),K10216) (K18364,K02554) (K18365,K01666) (K18366,K04073) +M00570:(K17989,K01754) K01652+(K01653,K11258) K00053 K01687 K00826 +M00572:K02169 (K00647,K09458) K00059 K02372 K00208 (K02170,K09789,K19560,K19561) +M00573:K16593 K00652 K19563 K01935 K01012 +M00574:K11023 -K11024 K11025 K11026 K11027 +M00575:K22944 K11004 K07389 K11003 K12340 +M00576:(K10928+K10929) (K16883,K16884) +M00577:K01906 K00652 (K00833,K19563) K01935 K01012 +M00579:(K00625,K13788,K15024) K00925 +M00580:(K08094 (K08093,K13812),K13831) K01807 +M00595:K17222+K17223+K17224-K17225-K22622+K17226+K17227 +M00596:K00958 (K00394+K00395) (K11180+K11181-K27196) (K27187+K27188+K27189+K27190+K27191) +M00597:K08928+K08929 +M00598:K08940+K08941+K08942+K08943 +M00608:K10977 K16792+K16793 K10978 +M00609:K00789 K17462 K01243 K07173 K17216 K17217 +M00611:(M00161,M00163) M00165 +M00612:M00597 M00165 +M00613:M00597 M00376 +M00614:M00598 M00173 +M00615:(K02575,K15576+K15577+K15578-K15579) M00531 +M00616:(K02048,K23163)+K02046+K02047+K02045 M00176 +M00617:M00567,M00357,M00356,M00563 +M00618:M00377 M00579 +M00620:(K00169+K00170+K00171+K00172) (K01959+K01960) K00024 (K01677+K01678) (K18209+K18210) (K01902+K01903) (K00174+K00175+K00176+K00177) +M00621:(K00281,K00282+K00283) K00605 K00382 +M00622:K18029+K18030 K14974 K18028 K15357 K13995 K01799 +M00623:K18068+K18069 K18067 K04102 +M00624:K18074+K18075+K18077 K18076 +M00625:K02547 K02546 K02545 +M00627:K02172 K02171 (K18766,K17836) +M00630:(K18106,K19634) K18102 K18103 K18107 +M00631:K01812 K00041 (K01685,K16849+K16850) K00874 (K01625,K17463) +M00632:K01785 K00849 K00965 K01784 +M00633:K05308 K18126 K11395 K18978 +M00636:K18251+K18252-K18253-K18254 K18255 K18256 +M00637:(K05599+K05600+K11311,K16319+K16320+K18248+K18249) +M00638:K18242+K18243+K14578+K14581 +M00639:K18294 K18295+K18296-K08721 +M00641:K18297 K18298+K18299-K18300 +M00642:K18301 K18302+K18303-K18139 +M00643:K18129 K18094+K18095+K18139 +M00649:K18143 K18144 K18145+K18146-K18147 +M00651:(K18345 K18344 K07260 K18346),(K18351 K18352 K18354 K18353) (K18347 K15739 K08641) +M00652:K18350 K18349 K18348 K18856 K18866 +M00660:K03222+K03226+K03227+K03228+K03229+K03230+K03224+K03225+K03223+K18374+K18376 K18373 K18375 K18377 K18378 K18379 K18380 K18381 +M00661:K18385 K18386 K18387 +M00664:K14658 K14659 K14666 K14657 +M00672:K12743 K04126 K10852 +M00673:K12743 K04126 K04127 K12744 K12745 K04128 K18062 K18063 +M00674:K12673 K12674 K12675 K12676 +M00675:K18317 K18316 K18315 +M00696:K18140 K18141+K18142+K12340 +M00697:K07690 K18898+K18899+K12340 +M00698:K18900 K18901+K18902+K18903 +M00700:(K18906,K18907) K18104 +M00702:(K18906,K18907) K08170 +M00704:K18906 K08168 +M00705:K18909 K18908 +M00714:K18938 K08167 +M00718:K18131 K03585+K18138+K18139 +M00725:K19077 K19078 K03367+K03739+K14188+K03740 +M00726:K19077 K19078 K14205 +M00730:K19077 K19078 K19079+K19080 +M00736:K19102+K19103+K05375 K19104 K19105 K19106 +M00740:(K01647,K01659) K27802 K00031 K00261 K19268+K01846 K04835 K19280 K14449 K19281 K19282 K00024 +M00741:(K01965+K01966,K11263+(K18472,K27094+K27095,K19312+K22568),K01964+K15036+K15037) K05606 (K01847,K01848+K01849) +M00744:K07637 K07660 K08477 +M00745:(K18072 K18073),(K07644 K07665),K18297 K18093 +M00746:K13632 K18513 K09476 +M00761:K00012 K10011 K07806 K10012 K13014 +M00763:K05826 (K19412 K05828 K05829 K05830 K05831) +M00769:K18304 K19591 K19595+K19594+K19593 +M00773:K15988+K24555+K24556+K24557+K24558 K15989+K15990 K15992 K15991 K15993 K15994 K15995 K15996 +M00774:K10817+K24563+K24564 K14366 K14367 K14368+K15997 K14370 K14369 +M00775:K16007+K24565+K24566 K16008 K16009 K13320 K16010 +M00776:K16000+K16001+K16002-K16003 K16004 K16005 K16006 +M00777:K14371+K24567+K24568+K24569 K14372 K14373 K14374 K14375 +M00778:K05551+K05552+K05553 -K12420 ((K05554,K14249,K15884,K15885) (K05555,K14250),K15886) +M00779:K05556 (K14626,K14627) (K14628,K14629) (K14630+K14631,K14632) +M00780:K14251 K14252 K14253 K14254 K14255 K14256 K21301 +M00781:K15941 K15942 K15943 K15944 +M00782:K15959 K15960 K15961 K15963 K15964 K15965 K15966 K15967 +M00783:K15968 K15969 K15886 -K15970 K15971 K15972 +M00784:K19566 K19567 K19568 K19569 K19570 +M00785:(K19741 K19723) K19726 (K19725 K19724 K19727) +M00786:K18281 K14132 K17475 K18280 K17827 K17826 K14134 K17825 K18279 +M00787:K19546 K19547 K19550 K19549 K19548 K13037 +M00788:K19835 K19834 +M00789:K14266 K19884 K19885 K19886+K19887 K19888 K19889 +M00790:K14266 K19981 K14257 K19982 +M00793:K00973 K01710 ((K01790 K00067),K23987) +M00794:K13312 K13313 +M00795:K19855 K12710 K17625 +M00796:K19853 K19854 K13307 +M00797:K13308 K13309 (K13310,K16436) (K13311,K13326) +M00798:K16435 K13315 K13317 (K13316,K16438) K13318 +M00799:K16435 K13315 K16438 K19856 K19857 +M00800:K16435 K16436 K13326 K16438 K13322 +M00801:K16435 K13327 K19858 K13319 +M00802:K16435 K13327 K13328 K13329 K13330 +M00803:K16435 K19859 K16436 K13332 +M00804:K28504+K10945+K10946 K10535 K00370+K00371 +M00805:K20075 K20076 K20077+K20078 K20079 K20080 K20081 K20082 +M00808:K20086 K20087+K20088 K20089 K20090 +M00810:K19818+K19819+K19820 (K19826,K19890) K19185+K19186+K19187 K19188 -K20155 +M00811:K20169 (K20170,(K20158 K19700)) K20171-K20172 K15359,K18276 +M00814:K19969 K19979 K19974 K20424 K20425 K20426 K20427 K20430 -- -- +M00815:K19969 K20431 K20432 K20433 K20434 K20435 K20436 K20437 K20438 +M00819:K12250 K15907 -- K18056 K17747 K18091 K18057 K17476 +M00823:K14251 K14252 K14253 K14254 K14255 K14256 K21301 K14257+K21297 +M00824:K15314 K21160+K21161+K21162+K21163+K21164+K21165+K21166+K21167 +M00825:K15314 K21168+K21169+K21170+K21171+K21172+K21173+K21174 +M00826:K20159+K21175 K20156 K21176 K21177 K21178 K21179 +M00827:K21183 (K21181 K21182 K16431 K21184 K21185) +M00828:K21183 (K21181 K21182 K21188) +M00829:K15320 K21191 K21192 +M00830:K20422 K20420 K20421 K20423 +M00831:K21221 K21222 K21223 K21224 K21225 +M00832:K21183 (K21227 K21228 K16431 K21185) +M00833:(K21254 K21255 K21256 K21257 K21258) (K21259 K21260 K21261 K21262 K21263) +M00834:K21254 K21255 K21256 K21257 K21258 +M00835:K13063 K20261 K06998 K20260 K20262 K21103 K20940 +M00836:K22011 K22012 (K21610+K21611) K21612 +M00837:(K21780+K21781 K21782 K21783 K21784 K21785 K21786) (K21428 K21778 K21779) K21787 +M00838:(K21780+K21781 K21782 K21783 K21784 K21785 K27675) (K21791 K21792 K21793) K21787 +M00840:K14652 K22100 -- K01633 K13941 K22099 K00287 +M00841:K01495 K22101 K13941 K11754 K13998 +M00842:K01495 K01737 K00072 +M00843:K01495 K01737 K17745 +M00844:K00611 K01940 (K01755,K14681) +M00845:K22478 K00145 K00821 K09065 K01438 K01940 K01755 +M00846:K02492 K01845 K01698 K01749 (K01719,K13542,K13543) (K02302,(K00589,K02303,K02496,K13542,K13543)+(K02304,(K24866+K03794))) +M00847:K22225 K22226 (K22227,K25033) +M00848:K09460 K02078+K14245+K14246+K22798 K22799 K22800 K21272 K21271 K22801 K22802 +M00849:K00626 K01641 (K00021,K00054) ((K00869 (K17942,(K25517+K09128 K25518+K03186))),(K18689 K18690 K22813)) K06981 K01823 +M00850:(K10928+K10929) K10954 K10952 K10953 K10948 K11018 +M00851:(K18768,K18970,K19316,K22346,K18794,K19318,K18971,K18793,K19319,K19320,K19321,K19322,K18972,K19211,K18976,K21277,K18782,K18781,K18780,K19099,K19216) +M00852:K10961 K10920 K10919 K10930 K10931 K10962 K10932 K10963 K10933 K10964 K10965 K10934 K10935 K10966 +M00853:K22850 -K22851 K22852 K22853 K22854 +M00854:(K00963 (K00693+K00750,K16150,K16153,K13679,K20812)),(K00975 (K00703,K13679,K20812)) (K00700,K16149) +M00855:(K00688,K16153) (K01196,((K00705,K22451) (K02438,K01200))) (K15779,K01835,K15778) +M00856:K11014 K11023 K19298 K22918 +M00857:K22914 K22926 K22925 K22915 K22916 K22917 (K22924+K22921+K22923+K22922) +M00859:K11030 K08645 K11029 +M00860:K22976 K22977 K22980 K07282 K22116 K01932 K22981 +M00861:K00232 K12405 (K07513,K08764) +M00862:K10214 K12405 K08764 +M00866:K00677 (K02535,K16363) K02536 (K03269,K09949) K00748 K00912 K02527 K02517 K09778 +M00867:K12977 K03760 K23082+K23083 K23159 K09953 +M00868:K00643 K01698 K01749 K01719 K01599 K00228 K00231 K01772 +M00872:(K00728 K18207 K09654 K17547 ) K21031 (K19872 K19873 K21052 K21032 K09668) +M00873:K18660 K03955+K00645 K09458 K11539+K13370 K22540 K07512 +M00874:K11262 K03955+K00645 K09458 K00059 K22541 K07512 +M00875:K23371 K21949 K21721 K23372 K23373 K23374 K23375 +M00876:K21898 K23446 K23447 +M00877:K18652 K18653 K18654 +M00878:K01912 K02609+K02610+K02611+K02612+K02613 K15866 K02618 K02615 K01692 K00074 +M00879:K00673 K01484 K00840 K06447 K05526 +M00880:((K03639 K03637),K20967) (K03635,K21142) (((K03831,K03638) K03750),K15376) +M00881:K03801 K03644 +M00882:K23735 K03644 +M00883:(K23735,K23734) K03644 (K10105,K16869) +M00884:K23750 K03644 +M00885:K02078 (K11263+K18472 K00645 K11608) (K11609+K11610+(K27071+K27072,K27689)+K11611) +M00886:K02078 (K11263+K18472 K00645 K11608) (K11609+K11610+K27071+K27072+K11611 K27070+K11610+K27072+(K27073,K27074)+K11611) +M00887:(K11263+K27093+K27094+K27095) (K12428 K12437 K27306 K18851) +M00888:K02851 K16870 K16649 K16650 +M00889:K12628 K12629 K12630 K12631 K12632 K12633 K12634 K12635 K12636 +M00890:K22598 -- K22269 +M00891:K23646 K23647 K21477 +M00892:K00820 K00621 K01836 K00972 +M00893:(K20981 K20982 K20985 K20980 ) K20984 K20983 +M00894:K20503 K20508 K27602 K20502 K20501 +M00895:(K03148+K03154 K03151) (K03153 K03149 K10810) (K03147 K00941 K00788 K00946) +M00896:K22699 (K03147 (K00941 (K00788,K21220),K21219) K00946) +M00897:K03146 (K03147 K14153 K22911 K00949) +M00898:K03146 (K18278 K00877 K14154 -- K00949) +M00899:K00878 (((K00941 K00788),K14153,K21219)) +M00900:K21371 K21354 +M00901:K23665 K23666 K23667 K23668 +M00902:K21568 K19650 K21207 K21203 K21205 K21204 K21202 +M00903:K23999 K09459 K12901 K12902 K24000 K12903 +M00904:K22113 K01957 K22114 +M00905:K18287 K17835 K20204 +M00906:K23669 K23670 K23671 K23672 K23673 +M00909:K00820 (K03431,K28126) (K04042,K23144,(K28192 (K11528,K00972))) +M00910:K01850 K15849 K05359 +M00911:(K01497 K14654 K14655 --) K02858 (K00794 K00793 K00861 K00953) +M00912:(K00453,K00463) (K01432,K14263,K07130) K00486 K01556 K00452 K00767 (K00969,K06210) (K01916,K01950) +M00913:(K00606 K00077) (K13367 K00128) K01918 +M00914:K00606 K00077 K06982 K09722 K13038 K02201 K09735 +M00915:K21722 K21723 K21724 +M00916:K06215+K08681 +M00917:(K01853 K00559 K14423 K23558 -- K08246 K05917 K00222 K01824 K08242) (K14424 K00227 K00213 K09828) +M00918:K03897 K03896 K03894 K03895 +M00919:K15783 K15784 K15785 K15786 +M00921:K13787 K18686 K22997 K22998 +M00922:(K08068,K24257) K01654 K00983 +M00923:K15894 K19068 K24258 +M00924:(K02302,(K02303,K13542) (K02304,K24866)) (K02190,K03795,K22011) K03394 (K05934,K13541,K21479) K05936 (K02189,K13541) K02188 K05895 (K02191 K03399,K00595) K06042 K02224 +M00925:(K02303,K13542) (K03394,K13540) K02229 (K05934,K13540,K13541) K05936 K02228 K05895 K00595 K06042 K02224 K02230+K09882+K09883 +M00926:K02492 K01845 K01698 K01749 (K01719,K13542) K01599 K00231 K01772 K00435 +M00927:K04120 K04121 K04122 K04123 +M00928:K05282 K04124 +M00929:K20657 K21292 K12917 K12918 K12919 +M00930:K11782 K18285 (K18286,K20810) K11783 K11784 K11785 +M00931:K11782 K18285 K18284 K11784 K11785 +M00932:(K02552 K02551 K08680 K02549,K14759) (K01911,K14760) K01661 (K19222,K12073) K23094 K17872 K23095 +M00933:K12501 K12502 +M00934:K24528+K24559+K24560+K24561+K24562 K24529 K24292+K24530 K24531 K21540 K21539 K24390 +M00935:(K09733 K19793 K07144) (K18933 K06914) K07072 +M00936:K01593 K24541 K22450 (K22588,K13066) +M00937:K15316 K17643 K17644 K17645 K17652 K17646 K24440 K24855 K17648 K24439 K24856+K24438+K24857+K24858 K17649 K17650 K17651 +M00938:(K00525+K00526,K10807+K10808) (K00940,K18533) K01520 (K00560,K13998,K03465) K00943 +M00939:K09018+K09024 K09020 K09021 K09023 (K09019,K16066) +M00940:K00660+K08243 K01859 +M00941:K13257 K13258 +M00942:K13259 K13260 K05281 K13265 K25075 +M00943:K13382 K13383 K13384 K13385 K13386 +M00944:K22093 K13391 K13392 K13393 K01742 K14975 K14976 K13394 +M00945:K00307 K21070 K13395 K13396 K21692 K21693 K22089 +M00946:K00307 K13397 K13395 K13396 K20621 K22094 K22095 K22096 K23157+K23158 K22097 K22098 +M00947:K19746 K19744 +M00948:K12658 (K21060,K22549+K21061+K22550) K21062 K13877 +M00949:K01780 K23120 K23122 +M00950:K00652 K25570 K01935 K01012 +M00951:(K25562 K25597) (K25563 K25594) K25598 +M00952:K13222 K13223 K13224 K13225 K13226 K13227 K13229 K13230 +M00953:K00789 K05953 K14271 K22374 K18054 +M00954:K21279 K21055 K21750 +M00955:K12409 K05304 K01097 K21749 -K08080 +M00956:K01582 K09251 K00137 K07250 K00135 K15737 K15736 +M00957:K00468 K01506 (K14268,K07250) K00135 ((K15737 K15736),(K01041 K00252 (K01692,K01825,K01782) (K01825,K01782) K00626)) +M00958:((K01490 (K01081,K19970,K03787,K18550)),((K01081,K19970,K11751,K03787,K02566,K08693) (K01488,K19572,K05810))) (K03783,K03784,K09913,K05810) (K00106,K00087+K13479+K13480,K13481+K13482,K11177+K11178+K13483) +M00959:(K01081,K19970,K11751,K03787,K02566,K08693,K20881) (K03783,K03784,K09913,K05810) K01487 (K00106,K00087+K13479+K13480,K13481+K13482,K11177+K11178+K13483) +M00960:(K25316,K25317) K26064 K13609 K26065 K26061 K26062 K25986 K26063 K15737 +M00961:(K26037 K15777) ((K15776,K15774) K26038) +M00962:K22433 K22434 K22435 K22436 +M00963:K14130 K18884 K17746 +M00964:K19182 K19183 -- K19184 K14135 +M00965:(K27780 K27789 K27790 K27791 K27792 K27793 K27795 K12696 K21895 K22365 K22323 K21896 K12697 K12698) K27794 (K27796 --) +M00966:K26069 K26175 K26070 K26071 +M00967:K26176 K26178 K22906 +M00968:(((K00757,K26211,K26212) (K21056,K26208)),K18931) K18237 (K01601,(K26210 K01636)) +M00969:(K22569 K21295 K22570 K22571 K22572 ) K22573 (K22574 K22575) +M00970:((K00318 K00294),K13821) +M00971:K15813 K20667 K26481 K26482 K26483 K26484 K26485 K26487+K26488 K26489 K26490 K26491 K26493+K26494+K26495 +M00972:K00819 K00286 K00318 +M00973:(K00368,K15864) (K20932+K20933+K20934) K20935 +M00974:K00544 K00315 (K00306,K00314) +M00975:K00479+K21832 (((K00309,K00315) (K00301,K00302+K00303+K00304+K00305)),K21833+K21834+K25960+K25961) K00600 (K01752,K01754) +M00976:K00512 K00070 (K04119,K10207,K13368,K13369,K13370) (K12343,K12344,K12345) +M00977:K00512 K00070 K12343 (K13369,K00089,K00037) (K04119,K10207) +M00978:K01915 K01955+K01956 K00611 K01940 K01755 (K27542,K27545) +M00979:K27776 K08233 K12694 K22326 K27777 K27778 K21026 K27779 +M00980:K27780 K27781 K27782 K27783 K27784 +M00981:K01593 K01757 K12693 K23493 +M00982:K01659 (K01720,(K20455 K09788)) (K01682,K27802) (K03417,K01637) (K00239+K00240+K00241-(K00242,K18859,K18860),K00244+K00245+K00246-K00247) (K01676,K01679,K01677+K01678) (K00024,K00116) +M00983:K05294 K23362 K23553 K23552 +M00984:(K16937+K16936,K05908,K19713) K27925 +M00985:K17229+K17230 +M00986:K18367,(K17219+K17220+K17221) +M00987:K13811 K05907 K00392 +M00988:(K01495,K09007,K22391) K01737 K10026 K06920 (K06879,K09457) +M00989:(K03181,K18240) K03179 K03182+K03186 K24844+K24845+K24843 K00568 K03183 +M00990:K17486 K20034 K20035 K20036 +M00991:K28073 (K28060,K28061) K00140 +M00992:K28069 K28070 K28071 K28060 K00140 +M00993:K28072 K19745 +M00994:K00469 K16190 K12447 +M00995:K00820 K03431 K04042 K00790 K00075 +M00996:K09001 K22292 K07102 K00992 +M00997:K00012 K08678 K12448 +M00998:K12446 K12447 +M00999:K00012 K08679 +M01000:(K01809,K28465,K15916,K16011) (K17497,K01840,K15778,K16881) (K00966,K00971,K16011,K16881) +M01001:(K05305 K00976),K25314,K25315 +M01002:K00820 K28125 K28126 K23144 +M01003:K00884 K01836 K00972 +M01004:K01784 (K01854,K28214) +M01005:K13015 K27853 +M01006:(K01809,K28465,K15916,K16011) (K01840,K15778,K16881) (K00966,K00971,K16011,K16881) K01711 K13010 +M01007:K15894 K15895 K15896 K15897 K15898 K15899 +M01008:K24336 K24280 K24281 K24282 K24283 K24284 K24285 +M01009:(K24300,K28372) (K24310,K24311) +M01010:K15912 K15910 K15913 +M01011:K18429 K18430 K18431 +M01012:K24336 K24280 K24303 K24304 K24283 K24306 K24307 +M01013:K10720 K10721 K10722 K10723 +M01014:K01791 K02472 +M01015:K00844 (((K17497,K01840,K15778) (K00966,K00971,K16011)),K16881) +M01016:K01711 K02377 +M01017:K01711 K21131 K21130 +M01018:K01711 K15856 +M01019:K01711 K22252 +M01020:K01711 K13010 K17939 +M01021:K12450 K12451 +M01022:K00973 K01710 K01790 (K19180,K19652) +M01023:K00973 K01710 K20679 K20680 K20681 +M01024:K00973 K01710 K24249 K24250 K24251 +M01025:K00973 K01710 K02805 K16704 +M01026:K00973 K01710 K20429 K21379 +M01027:K00973 K01710 K13306 K20678 +M01028:K03271 K07031 K03273 K15669 +M01029:K00978 K01709 K12452+K00523 K12453 K12454 +M01030:K00978 K01709 K12452+K00523 (K12455,K19632) +M01031:K00978 K01709 K12452+K00523 K15857 K15858 +M01032:K24300 K24312 +M01033:K24300 K25626 K27969 +M01034:K01711 K13010 K00607 +M01035:(K13015,K02474) (K13016,K13020) K13017 K13018 K13019 +M01036:(K02474,K22926) (K22925,K02473) +M01037:K24300 (K25626,K26217) +M01038:K10208 K10209 K10210 K25072 K10211 K10212 +M01039:K09844 K09845 K09846 +M01040:K06444 K06443 (K15747,K15746) K09837 +M01041:K20616 K20611 K08977 +M01042:K15745 K17841 K17842 K17819 +M01043:K06443 K09844 K25073 K09846 K25074 +M01044:((K09836 K15746),K23037) +M01045:(K06443,K22502,K14605,K14606) (K02294,K15747,K15746,K22492) +M01046:K09839 K09838 +M01047:K21013 K15890 K00128 K10718 K14937
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/all_pathways_class.txt Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,557 @@ +M00001:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00002:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00003:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00004:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00005:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00006:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00007:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00008:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00009:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00010:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00011:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00012:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00013:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00014:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00015:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00016:Pathway modules; Amino acid metabolism; Lysine metabolism +M00017:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00018:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00019:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism +M00020:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00021:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00022:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00023:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00024:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00025:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00026:Pathway modules; Amino acid metabolism; Histidine metabolism +M00027:Pathway modules; Amino acid metabolism; Other amino acid metabolism +M00028:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00029:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00030:Pathway modules; Amino acid metabolism; Lysine metabolism +M00031:Pathway modules; Amino acid metabolism; Lysine metabolism +M00032:Pathway modules; Amino acid metabolism; Lysine metabolism +M00033:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00034:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00035:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00036:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism +M00037:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00038:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00039:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00040:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00042:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00043:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00044:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00045:Pathway modules; Amino acid metabolism; Histidine metabolism +M00046:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism +M00047:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00048:Pathway modules; Nucleotide metabolism; Purine metabolism +M00049:Pathway modules; Nucleotide metabolism; Purine metabolism +M00050:Pathway modules; Nucleotide metabolism; Purine metabolism +M00051:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism +M00052:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism +M00053:Pathway modules; Nucleotide metabolism; Purine metabolism +M00055:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00056:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00057:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00058:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00059:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00060:Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism +M00061:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00063:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00064:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00065:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00066:Pathway modules; Lipid metabolism; Lipid metabolism +M00067:Pathway modules; Lipid metabolism; Lipid metabolism +M00068:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00069:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00070:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00071:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00072:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00073:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00074:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00075:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00076:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00077:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00078:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00079:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism +M00081:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00082:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00083:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00085:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00086:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00087:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00088:Pathway modules; Lipid metabolism; Lipid metabolism +M00089:Pathway modules; Lipid metabolism; Lipid metabolism +M00090:Pathway modules; Lipid metabolism; Lipid metabolism +M00091:Pathway modules; Lipid metabolism; Lipid metabolism +M00092:Pathway modules; Lipid metabolism; Lipid metabolism +M00093:Pathway modules; Lipid metabolism; Lipid metabolism +M00094:Pathway modules; Lipid metabolism; Lipid metabolism +M00095:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00096:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00097:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M00098:Pathway modules; Lipid metabolism; Lipid metabolism +M00099:Pathway modules; Lipid metabolism; Lipid metabolism +M00100:Pathway modules; Lipid metabolism; Lipid metabolism +M00101:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00102:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00103:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00104:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00106:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00107:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00108:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00109:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00110:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00112:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00113:Pathway modules; Lipid metabolism; Lipid metabolism +M00114:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00115:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00116:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00117:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00118:Pathway modules; Amino acid metabolism; Other amino acid metabolism +M00119:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00120:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00121:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00122:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00123:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00124:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00125:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00126:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00127:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00128:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00129:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00130:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00131:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00132:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00133:Pathway modules; Amino acid metabolism; Polyamine biosynthesis +M00134:Pathway modules; Amino acid metabolism; Polyamine biosynthesis +M00135:Pathway modules; Amino acid metabolism; Polyamine biosynthesis +M00136:Pathway modules; Amino acid metabolism; Polyamine biosynthesis +M00137:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00138:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00140:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00141:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00142:Pathway modules; Energy metabolism; ATP synthesis +M00143:Pathway modules; Energy metabolism; ATP synthesis +M00144:Pathway modules; Energy metabolism; ATP synthesis +M00145:Pathway modules; Energy metabolism; ATP synthesis +M00146:Pathway modules; Energy metabolism; ATP synthesis +M00147:Pathway modules; Energy metabolism; ATP synthesis +M00148:Pathway modules; Energy metabolism; ATP synthesis +M00149:Pathway modules; Energy metabolism; ATP synthesis +M00150:Pathway modules; Energy metabolism; ATP synthesis +M00151:Pathway modules; Energy metabolism; ATP synthesis +M00152:Pathway modules; Energy metabolism; ATP synthesis +M00153:Pathway modules; Energy metabolism; ATP synthesis +M00154:Pathway modules; Energy metabolism; ATP synthesis +M00155:Pathway modules; Energy metabolism; ATP synthesis +M00156:Pathway modules; Energy metabolism; ATP synthesis +M00157:Pathway modules; Energy metabolism; ATP synthesis +M00158:Pathway modules; Energy metabolism; ATP synthesis +M00159:Pathway modules; Energy metabolism; ATP synthesis +M00160:Pathway modules; Energy metabolism; ATP synthesis +M00161:Pathway modules; Energy metabolism; Photosynthesis +M00162:Pathway modules; Energy metabolism; ATP synthesis +M00163:Pathway modules; Energy metabolism; Photosynthesis +M00165:Pathway modules; Energy metabolism; Carbon fixation +M00168:Pathway modules; Energy metabolism; Carbon fixation +M00169:Pathway modules; Energy metabolism; Carbon fixation +M00170:Pathway modules; Energy metabolism; Carbon fixation +M00171:Pathway modules; Energy metabolism; Carbon fixation +M00172:Pathway modules; Energy metabolism; Carbon fixation +M00173:Pathway modules; Energy metabolism; Carbon fixation +M00174:Pathway modules; Energy metabolism; Methane metabolism +M00175:Pathway modules; Energy metabolism; Nitrogen metabolism +M00176:Pathway modules; Energy metabolism; Sulfur metabolism +M00307:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00308:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00309:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00338:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00344:Pathway modules; Energy metabolism; Methane metabolism +M00345:Pathway modules; Energy metabolism; Methane metabolism +M00346:Pathway modules; Energy metabolism; Methane metabolism +M00356:Pathway modules; Energy metabolism; Methane metabolism +M00357:Pathway modules; Energy metabolism; Methane metabolism +M00358:Pathway modules; Energy metabolism; Methane metabolism +M00363:Signature modules; Gene set; Pathogenicity +M00364:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00365:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00366:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00367:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00368:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00369:Pathway modules; Amino acid metabolism; Other amino acid metabolism +M00370:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00371:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M00372:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M00373:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00374:Pathway modules; Energy metabolism; Carbon fixation +M00375:Pathway modules; Energy metabolism; Carbon fixation +M00376:Pathway modules; Energy metabolism; Carbon fixation +M00377:Pathway modules; Energy metabolism; Carbon fixation +M00378:Pathway modules; Energy metabolism; Methane metabolism +M00415:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00416:Pathway modules; Energy metabolism; ATP synthesis +M00417:Pathway modules; Energy metabolism; ATP synthesis +M00418:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00419:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00422:Pathway modules; Energy metabolism; Methane metabolism +M00432:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism +M00433:Pathway modules; Amino acid metabolism; Lysine metabolism +M00525:Pathway modules; Amino acid metabolism; Lysine metabolism +M00526:Pathway modules; Amino acid metabolism; Lysine metabolism +M00527:Pathway modules; Amino acid metabolism; Lysine metabolism +M00528:Pathway modules; Energy metabolism; Nitrogen metabolism +M00529:Pathway modules; Energy metabolism; Nitrogen metabolism +M00530:Pathway modules; Energy metabolism; Nitrogen metabolism +M00531:Pathway modules; Energy metabolism; Nitrogen metabolism +M00532:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00533:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00534:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00535:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism +M00537:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00538:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00539:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00540:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00541:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00542:Signature modules; Gene set; Pathogenicity +M00543:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00544:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00545:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00546:Pathway modules; Nucleotide metabolism; Purine metabolism +M00547:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00548:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00549:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00550:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00551:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00552:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00554:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00555:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00563:Pathway modules; Energy metabolism; Methane metabolism +M00564:Signature modules; Gene set; Pathogenicity +M00565:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00567:Pathway modules; Energy metabolism; Methane metabolism +M00568:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00569:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00570:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism +M00572:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00573:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00574:Signature modules; Gene set; Pathogenicity +M00575:Signature modules; Gene set; Pathogenicity +M00576:Signature modules; Gene set; Pathogenicity +M00577:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00579:Pathway modules; Energy metabolism; Carbon fixation +M00580:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00595:Pathway modules; Energy metabolism; Sulfur metabolism +M00596:Pathway modules; Energy metabolism; Sulfur metabolism +M00597:Pathway modules; Energy metabolism; Photosynthesis +M00598:Pathway modules; Energy metabolism; Photosynthesis +M00608:Pathway modules; Energy metabolism; Methane metabolism +M00609:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism +M00611:Signature modules; Module set; Metabolic capacity +M00612:Signature modules; Module set; Metabolic capacity +M00613:Signature modules; Module set; Metabolic capacity +M00614:Signature modules; Module set; Metabolic capacity +M00615:Signature modules; Module set; Metabolic capacity +M00616:Signature modules; Module set; Metabolic capacity +M00617:Signature modules; Module set; Metabolic capacity +M00618:Signature modules; Module set; Metabolic capacity +M00620:Pathway modules; Energy metabolism; Carbon fixation +M00621:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00622:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00623:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00624:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00625:Signature modules; Gene set; Drug resistance +M00627:Signature modules; Gene set; Drug resistance +M00630:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00631:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00632:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00633:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism +M00636:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00637:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00638:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00639:Signature modules; Gene set; Drug resistance +M00641:Signature modules; Gene set; Drug resistance +M00642:Signature modules; Gene set; Drug resistance +M00643:Signature modules; Gene set; Drug resistance +M00649:Signature modules; Gene set; Drug resistance +M00651:Signature modules; Gene set; Drug resistance +M00652:Signature modules; Gene set; Drug resistance +M00660:Signature modules; Gene set; Plant pathogenicity +M00661:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds +M00664:Signature modules; Gene set; Symbiosis +M00672:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams +M00673:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams +M00674:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams +M00675:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams +M00696:Signature modules; Gene set; Drug resistance +M00697:Signature modules; Gene set; Drug resistance +M00698:Signature modules; Gene set; Drug resistance +M00700:Signature modules; Gene set; Drug resistance +M00702:Signature modules; Gene set; Drug resistance +M00704:Signature modules; Gene set; Drug resistance +M00705:Signature modules; Gene set; Drug resistance +M00714:Signature modules; Gene set; Drug resistance +M00718:Signature modules; Gene set; Drug resistance +M00725:Signature modules; Gene set; Drug resistance +M00726:Signature modules; Gene set; Drug resistance +M00730:Signature modules; Gene set; Drug resistance +M00736:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams +M00740:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00741:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00744:Signature modules; Gene set; Drug resistance +M00745:Signature modules; Gene set; Drug resistance +M00746:Signature modules; Gene set; Drug resistance +M00761:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00763:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00769:Signature modules; Gene set; Drug resistance +M00773:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis +M00774:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis +M00775:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis +M00776:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis +M00777:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis +M00778:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00779:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00780:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00781:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00782:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00783:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00784:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00785:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00786:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds +M00787:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00788:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00789:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00790:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00793:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00794:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00795:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00796:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00797:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00798:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00799:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00800:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00801:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00802:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00803:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis +M00804:Pathway modules; Energy metabolism; Nitrogen metabolism +M00805:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00808:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00810:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00811:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00814:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00815:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00819:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00823:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis +M00824:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00825:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00826:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00827:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00828:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00829:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00830:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00831:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00832:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00833:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00834:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis +M00835:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00836:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00837:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00838:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00840:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00841:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00842:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00843:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00844:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00845:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00846:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00847:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00848:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00849:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis +M00850:Signature modules; Gene set; Pathogenicity +M00851:Signature modules; Gene set; Drug resistance +M00852:Signature modules; Gene set; Pathogenicity +M00853:Signature modules; Gene set; Pathogenicity +M00854:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00855:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00856:Signature modules; Gene set; Pathogenicity +M00857:Signature modules; Gene set; Pathogenicity +M00859:Signature modules; Gene set; Pathogenicity +M00860:Signature modules; Gene set; Pathogenicity +M00861:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00862:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00866:Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism +M00867:Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism +M00868:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00872:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00873:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00874:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00875:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00876:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00877:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00878:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00879:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00880:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00881:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00882:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00883:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00884:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00885:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00886:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00887:Pathway modules; Lipid metabolism; Fatty acid metabolism +M00888:Pathway modules; Glycan metabolism; Other polysaccharide metabolism +M00889:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00890:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00891:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds +M00892:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00893:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds +M00894:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00895:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00896:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00897:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00898:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00899:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00900:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00901:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds +M00902:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00903:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00904:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00905:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00906:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00909:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00910:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00911:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00912:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00913:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00914:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00915:Pathway modules; Xenobiotics biodegradation; Aromatics degradation +M00916:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00917:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00918:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00919:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00921:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds +M00922:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00923:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00924:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00925:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00926:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00927:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M00928:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M00929:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M00930:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00931:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00932:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00933:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00934:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis +M00935:Pathway modules; Energy metabolism; Methane metabolism +M00936:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism +M00937:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds +M00938:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism +M00939:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism +M00940:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00941:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00942:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00943:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00944:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00945:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00946:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00947:Pathway modules; Amino acid metabolism; Other amino acid metabolism +M00948:Pathway modules; Amino acid metabolism; Other amino acid metabolism +M00949:Pathway modules; Amino acid metabolism; Other amino acid metabolism +M00950:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00951:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00952:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00953:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00954:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00955:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00956:Pathway modules; Amino acid metabolism; Lysine metabolism +M00957:Pathway modules; Amino acid metabolism; Lysine metabolism +M00958:Pathway modules; Nucleotide metabolism; Purine metabolism +M00959:Pathway modules; Nucleotide metabolism; Purine metabolism +M00960:Pathway modules; Amino acid metabolism; Lysine metabolism +M00961:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00962:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00963:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00964:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00965:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00966:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00967:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00968:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00969:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics +M00970:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00971:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00972:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00973:Pathway modules; Energy metabolism; Nitrogen metabolism +M00974:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00975:Pathway modules; Amino acid metabolism; Serine and threonine metabolism +M00976:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00977:Pathway modules; Lipid metabolism; Sterol biosynthesis +M00978:Pathway modules; Amino acid metabolism; Arginine and proline metabolism +M00979:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00980:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00981:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds +M00982:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism +M00983:Pathway modules; Glycan metabolism; Glycan biosynthesis +M00984:Pathway modules; Energy metabolism; Sulfur metabolism +M00985:Pathway modules; Energy metabolism; Sulfur metabolism +M00986:Pathway modules; Energy metabolism; Sulfur metabolism +M00987:Pathway modules; Energy metabolism; Sulfur metabolism +M00988:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00989:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism +M00990:Pathway modules; Energy metabolism; Sulfur metabolism +M00991:Pathway modules; Energy metabolism; Sulfur metabolism +M00992:Pathway modules; Energy metabolism; Sulfur metabolism +M00993:Pathway modules; Energy metabolism; Sulfur metabolism +M00994:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00995:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00996:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00997:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00998:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M00999:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01000:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01001:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01002:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01003:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01004:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01005:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01006:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01007:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01008:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01009:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01010:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01011:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01012:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01013:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other compounds +M01014:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01015:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01016:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01017:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01018:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01019:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01020:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01021:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01022:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01023:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01024:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01025:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01026:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01027:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01028:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01029:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01030:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01031:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01032:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01033:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01034:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01035:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01036:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01037:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis +M01038:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01039:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01040:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01041:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01042:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01043:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01044:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01045:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01046:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis +M01047:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other compounds
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/all_pathways_names.txt Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,557 @@ +M00001:Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate +M00002:Glycolysis, core module involving three-carbon compounds +M00003:Gluconeogenesis, oxaloacetate => fructose-6P +M00004:Pentose phosphate pathway (Pentose phosphate cycle) +M00005:PRPP biosynthesis, ribose-5P => PRPP +M00006:Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P +M00007:Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P +M00008:Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate +M00009:Citrate cycle (TCA cycle, Krebs cycle) +M00010:Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate +M00011:Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate +M00012:Glyoxylate cycle +M00013:Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA +M00014:Glucuronate pathway (uronate pathway) +M00015:Proline biosynthesis, glutamate => proline +M00016:Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine +M00017:Methionine biosynthesis, aspartate => homoserine => methionine +M00018:Threonine biosynthesis, aspartate => homoserine => threonine +M00019:Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine +M00020:Serine biosynthesis, glycerate-3P => serine +M00021:Cysteine biosynthesis, serine => cysteine +M00022:Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate +M00023:Tryptophan biosynthesis, chorismate => tryptophan +M00024:Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine +M00025:Tyrosine biosynthesis, chorismate => HPP => tyrosine +M00026:Histidine biosynthesis, PRPP => histidine +M00027:GABA (gamma-Aminobutyrate) shunt +M00028:Ornithine biosynthesis, glutamate => ornithine +M00029:Urea cycle +M00030:Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine +M00031:Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine +M00032:Lysine degradation, lysine => saccharopine => acetoacetyl-CoA +M00033:Ectoine biosynthesis, aspartate => ectoine +M00034:Methionine salvage pathway +M00035:Methionine degradation +M00036:Leucine degradation, leucine => acetoacetate + acetyl-CoA +M00037:Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin +M00038:Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate +M00039:Monolignol biosynthesis, phenylalanine/tyrosine => monolignol +M00040:Tyrosine biosynthesis, chorismate => arogenate => tyrosine +M00042:Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline +M00043:Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine +M00044:Tyrosine degradation, tyrosine => homogentisate +M00045:Histidine degradation, histidine => N-formiminoglutamate => glutamate +M00046:Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate +M00047:Creatine pathway +M00048:De novo purine biosynthesis, PRPP + glutamine => IMP +M00049:Adenine ribonucleotide biosynthesis, IMP => ADP,ATP +M00050:Guanine ribonucleotide biosynthesis, IMP => GDP,GTP +M00051:De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP +M00052:Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP +M00053:Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP +M00055:N-glycan precursor biosynthesis +M00056:O-glycan biosynthesis, mucin type core +M00057:Glycosaminoglycan biosynthesis, linkage tetrasaccharide +M00058:Glycosaminoglycan biosynthesis, chondroitin sulfate backbone +M00059:Glycosaminoglycan biosynthesis, heparan sulfate backbone +M00060:KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type +M00061:D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde-3P +M00063:CMP-KDO biosynthesis, ribulose-5P => CMP-KDO +M00064:ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep +M00065:GPI-anchor biosynthesis, core oligosaccharide +M00066:Lactosylceramide biosynthesis +M00067:Sulfoglycolipids biosynthesis, ceramide/1-alkyl-2-acylglycerol => sulfatide/seminolipid +M00068:Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer +M00069:Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 +M00070:Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer +M00071:Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer +M00072:N-glycosylation by oligosaccharyltransferase +M00073:N-glycan precursor trimming +M00074:N-glycan biosynthesis, high-mannose type +M00075:N-glycan biosynthesis, complex type +M00076:Dermatan sulfate degradation +M00077:Chondroitin sulfate degradation +M00078:Heparan sulfate degradation +M00079:Keratan sulfate degradation +M00081:Pectin degradation +M00082:Fatty acid biosynthesis, initiation +M00083:Fatty acid biosynthesis, elongation +M00085:Fatty acid elongation in mitochondria +M00086:beta-Oxidation, acyl-CoA synthesis +M00087:beta-Oxidation +M00088:Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone +M00089:Triacylglycerol biosynthesis +M00090:Phosphatidylcholine (PC) biosynthesis, choline => PC +M00091:Phosphatidylcholine (PC) biosynthesis, PE => PC +M00092:Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE +M00093:Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE +M00094:Ceramide biosynthesis +M00095:C5 isoprenoid biosynthesis, mevalonate pathway +M00096:C5 isoprenoid biosynthesis, non-mevalonate pathway +M00097:Lycopene biosynthesis, geranylgeranyl-PP => lycopene +M00098:Acylglycerol degradation +M00099:Sphingosine biosynthesis +M00100:Sphingosine degradation +M00101:Cholesterol biosynthesis, FPP => cholesterol +M00102:Ergocalciferol biosynthesis, FPP => ergosterol/ergocalciferol +M00103:Cholecalciferol biosynthesis +M00104:Bile acid biosynthesis, cholesterol => cholate/chenodeoxycholate +M00106:Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate +M00107:Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone +M00108:C21-Steroid hormone biosynthesis, progesterone => corticosterone/aldosterone +M00109:C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone +M00110:C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone +M00112:Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol +M00113:Jasmonic acid biosynthesis +M00114:Ascorbate biosynthesis, plants, fructose-6P => ascorbate +M00115:NAD biosynthesis, aspartate => quinolinate => NAD +M00116:Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol +M00117:Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol +M00118:Glutathione biosynthesis, glutamate => glutathione +M00119:Pantothenate biosynthesis, valine/L-aspartate => pantothenate +M00120:Coenzyme A biosynthesis, pantothenate => CoA +M00121:Heme biosynthesis, plants and bacteria, glutamate => heme +M00122:Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin +M00123:Biotin biosynthesis, pimeloyl-ACP/CoA => biotin +M00124:Pyridoxal phosphate biosynthesis, erythrose-4P => pyridoxal-P +M00125:Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD +M00126:Tetrahydrofolate biosynthesis, GTP => THF +M00127:Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP +M00128:Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinone +M00129:Ascorbate biosynthesis, animals, glucose-1P => ascorbate +M00130:Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 +M00131:Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol +M00132:Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate +M00133:Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine +M00134:Polyamine biosynthesis, arginine => ornithine => putrescine +M00135:GABA biosynthesis, eukaryotes, putrescine => GABA +M00136:GABA biosynthesis, prokaryotes, putrescine => GABA +M00137:Flavanone biosynthesis, phenylalanine => naringenin +M00138:Flavonoid biosynthesis, naringenin => pelargonidin +M00140:C1-unit interconversion, prokaryotes +M00141:C1-unit interconversion, eukaryotes +M00142:NADH:ubiquinone oxidoreductase, mitochondria +M00143:NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria +M00144:NADH:quinone oxidoreductase, prokaryotes +M00145:NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria +M00146:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex +M00147:NADH dehydrogenase (ubiquinone) 1 beta subcomplex +M00148:Succinate dehydrogenase (ubiquinone) +M00149:Succinate dehydrogenase, prokaryotes +M00150:Fumarate reductase, prokaryotes +M00151:Cytochrome bc1 complex respiratory unit +M00152:Cytochrome bc1 complex +M00153:Cytochrome bd ubiquinol oxidase +M00154:Cytochrome c oxidase +M00155:Cytochrome c oxidase, prokaryotes +M00156:Cytochrome c oxidase, cbb3-type +M00157:F-type ATPase, prokaryotes and chloroplasts +M00158:F-type ATPase, eukaryotes +M00159:V/A-type ATPase, prokaryotes +M00160:V-type ATPase, eukaryotes +M00161:Photosystem II +M00162:Cytochrome b6f complex +M00163:Photosystem I +M00165:Reductive pentose phosphate cycle (Calvin cycle) +M00168:CAM (Crassulacean acid metabolism), dark +M00169:CAM (Crassulacean acid metabolism), light +M00170:C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type +M00171:C4-dicarboxylic acid cycle, NAD - malic enzyme type +M00172:C4-dicarboxylic acid cycle, NADP - malic enzyme type +M00173:Reductive citrate cycle (Arnon-Buchanan cycle) +M00174:Methane oxidation, methanotroph, methane => formaldehyde +M00175:Nitrogen fixation, nitrogen => ammonia +M00176:Assimilatory sulfate reduction, sulfate => H2S +M00307:Pyruvate oxidation, pyruvate => acetyl-CoA +M00308:Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P +M00309:Non-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate +M00338:Cysteine biosynthesis, homocysteine + serine => cysteine +M00344:Formaldehyde assimilation, xylulose monophosphate pathway +M00345:Formaldehyde assimilation, ribulose monophosphate pathway +M00346:Formaldehyde assimilation, serine pathway +M00356:Methanogenesis, methanol => methane +M00357:Methanogenesis, acetate => methane +M00358:Coenzyme M biosynthesis +M00363:EHEC pathogenicity signature, Shiga toxin +M00364:C10-C20 isoprenoid biosynthesis, bacteria +M00365:C10-C20 isoprenoid biosynthesis, archaea +M00366:C10-C20 isoprenoid biosynthesis, plants +M00367:C10-C20 isoprenoid biosynthesis, non-plant eukaryotes +M00368:Ethylene biosynthesis, methionine => ethylene +M00369:Cyanogenic glycoside biosynthesis, tyrosine => dhurrin +M00370:Glucosinolate biosynthesis, tryptophan => glucobrassicin +M00371:Castasterone biosynthesis, plants, campesterol => castasterone +M00372:Abscisic acid biosynthesis, plants, 9'-cis-neoxanthin/9-cis-violaxanthin => abscisic acid +M00373:Ethylmalonyl pathway +M00374:Dicarboxylate-hydroxybutyrate cycle +M00375:Hydroxypropionate-hydroxybutylate cycle +M00376:3-Hydroxypropionate bi-cycle +M00377:Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) +M00378:F420 biosynthesis, archaea +M00415:Fatty acid elongation in endoplasmic reticulum +M00416:Cytochrome aa3-600 menaquinol oxidase +M00417:Cytochrome o ubiquinol oxidase +M00418:Toluene degradation, anaerobic, toluene => benzoyl-CoA +M00419:Cymene degradation, p-cymene => p-cumate +M00422:Acetyl-CoA pathway, CO2 => acetyl-CoA +M00432:Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate +M00433:Lysine biosynthesis, 2-oxoglutarate => 2-oxoadipate +M00525:Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine +M00526:Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine +M00527:Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine +M00528:Nitrification, ammonia => nitrite +M00529:Denitrification, nitrate => nitrogen +M00530:Dissimilatory nitrate reduction, nitrate => ammonia +M00531:Assimilatory nitrate reduction, nitrate => ammonia +M00532:Photorespiration +M00533:Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate +M00534:Naphthalene degradation, naphthalene => salicylate +M00535:Isoleucine biosynthesis, pyruvate => 2-oxobutanoate +M00537:Xylene degradation, xylene => methylbenzoate +M00538:Toluene degradation, toluene => benzoate +M00539:Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate +M00540:Benzoate degradation, cyclohexanecarboxylic acid =>pimeloyl-CoA +M00541:Benzoyl-CoA degradation, benzoyl-CoA => 3-hydroxypimeloyl-CoA +M00542:EHEC/EPEC pathogenicity signature, T3SS and effectors +M00543:Biphenyl degradation, biphenyl => 2-oxopent-4-enoate + benzoate +M00544:Carbazole degradation, carbazole => 2-oxopent-4-enoate + anthranilate +M00545:Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA +M00546:Purine degradation, xanthine => urea +M00547:Benzene/toluene degradation, benzene => catechol / toluene => 3-methylcatechol +M00548:Benzene degradation, benzene => catechol +M00549:UDP-Glc biosynthesis, Glc => UDP-Glc +M00550:Ascorbate degradation, ascorbate => D-xylulose-5P +M00551:Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol +M00552:D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P +M00554:UDP-Gal biosynthesis, Gal => UDP-Gal +M00555:Betaine biosynthesis, choline => betaine +M00563:Methanogenesis, methylamine/dimethylamine/trimethylamine => methane +M00564:Helicobacter pylori pathogenicity signature, cagA pathogenicity island +M00565:Trehalose biosynthesis, D-glucose-1P => trehalose +M00567:Methanogenesis, CO2 => methane +M00568:Catechol ortho-cleavage, catechol => 3-oxoadipate +M00569:Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA +M00570:Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine +M00572:Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP +M00573:Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin +M00574:Pertussis pathogenicity signature, pertussis toxin +M00575:Pertussis pathogenicity signature, T1SS +M00576:ETEC pathogenicity signature, heat-labile and heat-stable enterotoxins +M00577:Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin +M00579:Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate +M00580:Pentose phosphate pathway, archaea, fructose-6P => ribose-5P +M00595:Sulfur oxidation, SOX system, thiosulfate => sulfate +M00596:Dissimilatory sulfate reduction, sulfate => H2S +M00597:Anoxygenic photosystem II +M00598:Anoxygenic photosystem I +M00608:2-Oxocarboxylic acid chain extension, 2-oxoglutarate => 2-oxoadipate => 2-oxopimelate => 2-oxosuberate +M00609:Cysteine biosynthesis, methionine => cysteine +M00611:Oxygenic photosynthesis in plants and cyanobacteria +M00612:Anoxygenic photosynthesis in purple bacteria +M00613:Anoxygenic photosynthesis in green nonsulfur bacteria +M00614:Anoxygenic photosynthesis in green sulfur bacteria +M00615:Nitrate assimilation +M00616:Sulfate-sulfur assimilation +M00617:Methanogen +M00618:Acetogen +M00620:Incomplete reductive citrate cycle, acetyl-CoA => oxoglutarate +M00621:Glycine cleavage system +M00622:Nicotinate degradation, nicotinate => fumarate +M00623:Phthalate degradation, phthalate => protocatechuate +M00624:Terephthalate degradation, terephthalate => 3,4-dihydroxybenzoate +M00625:Methicillin resistance +M00627:beta-Lactam resistance, Bla system +M00630:D-Galacturonate degradation (fungi), D-galacturonate => glycerol +M00631:D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde-3P +M00632:Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P +M00633:Semi-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate-3P +M00636:Phthalate degradation, phthalate => protocatechuate +M00637:Anthranilate degradation, anthranilate => catechol +M00638:Salicylate degradation, salicylate => gentisate +M00639:Multidrug resistance, efflux pump MexCD-OprJ +M00641:Multidrug resistance, efflux pump MexEF-OprN +M00642:Multidrug resistance, efflux pump MexJK-OprM +M00643:Multidrug resistance, efflux pump MexXY-OprM +M00649:Multidrug resistance, efflux pump AdeABC +M00651:Vancomycin resistance, D-Ala-D-Lac type +M00652:Vancomycin resistance, D-Ala-D-Ser type +M00660:Xanthomonas spp. pathogenicity signature, T3SS and effectors +M00661:Paspaline biosynthesis, geranylgeranyl-PP + indoleglycerol phosphate => paspaline +M00664:Nodulation +M00672:Penicillin biosynthesis, aminoadipate + cycteine + valine => penicillin +M00673:Cephamycin C biosynthesis, aminoadipate + cycteine + valine => cephamycin C +M00674:Clavaminate biosynthesis, arginine + glyceraldehyde-3P => clavaminate +M00675:Carbapenem-3-carboxylate biosynthesis, pyrroline-5-carboxylate + malonyl-CoA => carbapenem-3-carboxylate +M00696:Multidrug resistance, efflux pump AcrEF-TolC +M00697:Multidrug resistance, efflux pump MdtEF-TolC +M00698:Multidrug resistance, efflux pump BpeEF-OprC +M00700:Multidrug resistance, efflux pump AbcA +M00702:Multidrug resistance, efflux pump NorB +M00704:Tetracycline resistance, efflux pump Tet38 +M00705:Multidrug resistance, efflux pump MepA +M00714:Multidrug resistance, efflux pump QacA +M00718:Multidrug resistance, efflux pump MexAB-OprM +M00725:Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon +M00726:Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF +M00730:Cationic antimicrobial peptide (CAMP) resistance, VraFG transporter +M00736:Nocardicin A biosynthesis, L-pHPG + arginine + serine => nocardicin A +M00740:Methylaspartate cycle +M00741:Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA +M00744:Cationic antimicrobial peptide (CAMP) resistance, protease PgtE +M00745:Imipenem resistance, repression of porin OprD +M00746:Multidrug resistance, repression of porin OmpF +M00761:Und-P-alpha-L-Ara4N biosynthesis, UDP-Glc => UDP-L-Ara4FN => Und-P-alpha-L-Ara4N +M00763:Ornithine biosynthesis, mediated by LysW, glutamate => ornithine +M00769:Multidrug resistance, efflux pump MexPQ-OpmE +M00773:Tylosin biosynthesis, methylmalonyl-CoA + malonyl-CoA => tylactone => tylosin +M00774:Erythromycin biosynthesis, propanoyl-CoA + methylmalonyl-CoA => deoxyerythronolide B => erythromycin A/B +M00775:Oleandomycin biosynthesis, malonyl-CoA + methylmalonyl-CoA => 8,8a-deoxyoleandolide => oleandomycin +M00776:Pikromycin/methymycin biosynthesis, methylmalonyl-CoA + malonyl-CoA => narbonolide/10-deoxymethynolide => pikromycin/methymycin +M00777:Avermectin biosynthesis, 2-methylbutanoyl-CoA/isobutyryl-CoA => 6,8a-Seco-6,8a-deoxy-5-oxoavermectin 1a/1b aglycone => avermectin A1a/B1a/A1b/B1b +M00778:Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide +M00779:Dihydrokalafungin biosynthesis, octaketide => dihydrokalafungin +M00780:Tetracycline/oxytetracycline biosynthesis, pretetramide => tetracycline/oxytetracycline +M00781:Nogalavinone/aklavinone biosynthesis, deoxynogalonate/deoxyaklanonate => nogalavinone/aklavinone +M00782:Mithramycin biosynthesis, 4-demethylpremithramycinone => mithramycin +M00783:Tetracenomycin C/8-demethyltetracenomycin C biosynthesis, tetracenomycin F2 => tetracenomycin C/8-demethyltetracenomycin C +M00784:Elloramycin biosynthesis, 8-demethyltetracenomycin C => elloramycin A +M00785:Cycloserine biosynthesis, arginine/serine => cycloserine +M00786:Fumitremorgin alkaloid biosynthesis, tryptophan + proline => fumitremorgin C/A +M00787:Bacilysin biosynthesis, prephenate => bacilysin +M00788:Terpentecin biosynthesis, GGAP => terpentecin +M00789:Rebeccamycin biosynthesis, tryptophan => rebeccamycin +M00790:Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin +M00793:dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha +M00794:dTDP-6-deoxy-D-allose biosynthesis +M00795:dTDP-beta-L-noviose biosynthesis +M00796:dTDP-D-mycaminose biosynthesis +M00797:dTDP-D-desosamine biosynthesis +M00798:dTDP-L-mycarose biosynthesis +M00799:dTDP-L-oleandrose biosynthesis +M00800:dTDP-L-megosamine biosynthesis +M00801:dTDP-L-olivose biosynthesis +M00802:dTDP-D-forosamine biosynthesis +M00803:dTDP-D-angolosamine biosynthesis +M00804:Complete nitrification, comammox, ammonia => nitrite => nitrate +M00805:Staurosporine biosynthesis, tryptophan => staurosporine +M00808:Violacein biosynthesis, tryptophan => violacein +M00810:Nicotine degradation, pyridine pathway, nicotine => 2,6-dihydroxypyridine/succinate semialdehyde +M00811:Nicotine degradation, pyrrolidine pathway, nicotine => succinate semialdehyde +M00814:Acarbose biosynthesis, sedoheptulopyranose-7P => acarbose +M00815:Validamycin A biosynthesis, sedoheptulopyranose-7P => validamycin A +M00819:Pentalenolactone biosynthesis, farnesyl-PP => pentalenolactone +M00823:Chlortetracycline biosynthesis, pretetramide => chlortetracycline +M00824:9-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 9-membered enediyne core +M00825:10-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 10-membered enediyne core +M00826:C-1027 benzoxazolinate moiety biosynthesis, chorismate => benzoxazolinyl-CoA +M00827:C-1027 beta-amino acid moiety biosynthesis, tyrosine => 3-chloro-4,5-dihydroxy-beta-phenylalanyl-PCP +M00828:Maduropeptin beta-hydroxy acid moiety biosynthesis, tyrosine => 3-(4-hydroxyphenyl)-3-oxopropanoyl-PCP +M00829:3,6-Dimethylsalicylyl-CoA biosynthesis, malonyl-CoA => 6-methylsalicylate => 3,6-dimethylsalicylyl-CoA +M00830:Neocarzinostatin naphthoate moiety biosynthesis, malonyl-CoA => 2-hydroxy-5-methyl-1-naphthoate => 2-hydroxy-7-methoxy-5-methyl-1-naphthoyl-CoA +M00831:Kedarcidin 2-hydroxynaphthoate moiety biosynthesis, malonyl-CoA => 3,6,8-trihydroxy-2-naphthoate => 3-hydroxy-7,8-dimethoxy-6-isopropoxy-2-naphthoyl-CoA +M00832:Kedarcidin 2-aza-3-chloro-beta-tyrosine moiety biosynthesis, azatyrosine => 2-aza-3-chloro-beta-tyrosyl-PCP +M00833:Calicheamicin biosynthesis, calicheamicinone => calicheamicin +M00834:Calicheamicin orsellinate moiety biosynthesis, malonyl-CoA => orsellinate-ACP => 5-iodo-2,3-dimethoxyorsellinate-ACP +M00835:Pyocyanine biosynthesis, chorismate => pyocyanine +M00836:Coenzyme F430 biosynthesis, sirohydrochlorin => coenzyme F430 +M00837:Prodigiosin biosynthesis, L-proline => prodigiosin +M00838:Undecylprodigiosin biosynthesis, L-proline => undecylprodigiosin +M00840:Tetrahydrofolate biosynthesis, mediated by ribA and trpF, GTP => THF +M00841:Tetrahydrofolate biosynthesis, mediated by PTPS, GTP => THF +M00842:Tetrahydrobiopterin biosynthesis, GTP => BH4 +M00843:L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4 +M00844:Arginine biosynthesis, ornithine => arginine +M00845:Arginine biosynthesis, glutamate => acetylcitrulline => arginine +M00846:Siroheme biosynthesis, glutamyl-tRNA => siroheme +M00847:Heme biosynthesis, archaea, siroheme => heme +M00848:Aurachin biosynthesis, anthranilate => aurachin A +M00849:C5 isoprenoid biosynthesis, mevalonate pathway, archaea +M00850:Vibrio cholerae pathogenicity signature, cholera toxins +M00851:Carbapenem resistance +M00852:Vibrio cholerae pathogenicity signature, toxin coregulated pilus +M00853:ETEC pathogenicity signature, colonization factors +M00854:Glycogen biosynthesis, glucose-1P => glycogen/starch +M00855:Glycogen degradation, glycogen => glucose-6P +M00856:Salmonella enterica pathogenicity signature, typhoid toxin +M00857:Salmonella enterica pathogenicity signature, Vi antigen +M00859:Bacillus anthracis pathogenicity signature, anthrax toxin +M00860:Bacillus anthracis pathogenicity signature, polyglutamic acid capsule biosynthesis +M00861:beta-Oxidation, peroxisome, VLCFA +M00862:beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA +M00866:KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type +M00867:KDO2-lipid A modification pathway +M00868:Heme biosynthesis, animals and fungi, glycine => heme +M00872:O-glycan biosynthesis, mannose type (core M3) +M00873:Fatty acid biosynthesis in mitochondria, animals +M00874:Fatty acid biosynthesis in mitochondria, fungi +M00875:Staphyloferrin B biosynthesis, L-serine => staphyloferrin B +M00876:Staphyloferrin A biosynthesis, L-ornithine => staphyloferrin A +M00877:Kanosamine biosynthesis, glucose-6P => kanosamine +M00878:Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA +M00879:Arginine succinyltransferase pathway, arginine => glutamate +M00880:Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor +M00881:Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H +M00882:Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H +M00883:Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 +M00884:Lipoic acid biosynthesis, octanoyl-CoA => dihydrolipoyl-E2 +M00885:Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA) +M00886:Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA and KasB) +M00887:Mycolic acid biosynthesis, meromycolic acid + alpha-carboxyacyl-CoA + trehalose => TMM => TDM/mAGP/GMM +M00888:Galactofuranan biosynthesis, decaprenyl phosphate + UDP-GlcNAc (+ dTDP-Rha/UDP-Galf) => GL-5 +M00889:Puromycin biosynthesis, ATP => puromycin +M00890:Roseoflavin biosynthesis, FMN => roseoflavin +M00891:Ditryptophenaline biosynthesis, tryptophan + phenylalanine => ditryptophenaline +M00892:UDP-GlcNAc biosynthesis, eukaryotes, Fru-6P => UDP-GlcNAc +M00893:Lovastatin biosynthesis, malonyl-CoA => lovastatin acid +M00894:Cannabidiol biosynthesis, malonyl-CoA => cannabidiol/dronabinol +M00895:Thiamine biosynthesis, prokaryotes, AIR (+ DXP/glycine) => TMP/TPP +M00896:Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP +M00897:Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP +M00898:Thiamine biosynthesis, pyridoxal-5P => TMP/thiamine/TPP +M00899:Thiamine salvage pathway, HMP/HET => TMP +M00900:Crocin biosynthesis, crocetin => crocin +M00901:Fumiquinazoline biosynthesis, tryptophan + alanine + anthranilate => fumiquinazoline +M00902:Podophyllotoxin biosynthesis, coniferyl alcohol => podophyllotoxin +M00903:Fosfomycin biosynthesis, phosphoenolpyruvate => fosfomycin +M00904:Dapdiamides biosynthesis, L-2,3-diaminopropanoate => dapdiamide A/B/C +M00905:Grixazone biosynthesis, aspartate 4-semialdehyde => grixazone B +M00906:Ethynylserine biosynthesis, lysine => ethynylserine +M00909:UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc +M00910:Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine +M00911:Riboflavin biosynthesis, fungi, GTP => riboflavin/FMN/FAD +M00912:NAD biosynthesis, tryptophan => quinolinate => NAD +M00913:Pantothenate biosynthesis, 2-oxoisovalerate/spermine => pantothenate +M00914:Coenzyme A biosynthesis, archaea, 2-oxoisovalerate => 4-phosphopantoate => CoA +M00915:Caffeine degradation, caffeine => xanthine +M00916:Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P +M00917:Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol +M00918:Aerobactin biosynthesis, lysine => aerobactin +M00919:Ectoine degradation, ectoine => aspartate +M00921:Cyclooctatin biosynthesis, dimethylallyl-PP + isopentenyl-PP => cyclooctatin +M00922:CMP-Neu5Ac biosynthesis, bacteria, UDP-GlcNAc => CMP-Neu5Ac +M00923:UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc +M00924:Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide +M00925:Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide +M00926:Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme +M00927:Gibberellin A12 biosynthesis, plants, GAPP => GA12 +M00928:Gibberellin A4/A1 biosynthesis, plants, GA12/GA53 => GA4/GA1 +M00929:Gibberellin A1 biosynthesis, GGPP => GA1 +M00930:Menaquinone biosynthesis, futalosine pathway +M00931:Menaquinone biosynthesis, modified futalosine pathway +M00932:Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol +M00933:Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol +M00934:Mycinamicin biosynthesis, malonyl-CoA + methylmalonyl-CoA => protomycinolide IV => mycinamicin II +M00935:Methanofuran biosynthesis +M00936:Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin +M00937:Aflatoxin biosynthesis, malonyl-CoA => aflatoxin B1 +M00938:Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP +M00939:Pyrimidine degradation, uracil => 3-hydroxypropanoate +M00940:Flavanone biosynthesis, p-coumaroyl-CoA => liquiritigenin +M00941:Isoflavone biosynthesis, liquiritigenin/naringenin => daidzein/genistein +M00942:Pterocarpan biosynthesis, daidzein => medicarpin +M00943:Reticuline biosynthesis, dopamine + 4HPAA => (S)-reticuline +M00944:Morphine biosynthesis, (S)-reticuline => morphine +M00945:Sanguinarine biosynthesis, (S)-reticuline => sanguinarine +M00946:Noscapine biosynthesis, (S)-reticuline => noscapine +M00947:D-Arginine racemization, D-arginine => L-arginine +M00948:Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate +M00949:Staphylopine biosynthesis, L-histidine => staphylopine +M00950:Biotin biosynthesis, BioU pathway, pimeloyl-ACP/CoA => biotin +M00951:Cremeomycin biosynthesis, aspartate/3,4-AHBA => cremeomycin +M00952:Benzoxazinoid biosynthesis, indoleglycerol phosphate => DIMBOA-glucoside +M00953:Mugineic acid biosynthesis, methionine => 3-epihydroxymugineic acid +M00954:CMP-KDN biosynthesis, Man-6P => CMP-KDN +M00955:CMP-Neu5Ac/Neu5Gc biosynthesis, animals, UDP-GlcNAc => CMP-Neu5Ac => CMP-Neu5Gc +M00956:Lysine degradation, bacteria, L-lysine => succinate +M00957:Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA +M00958:Adenine ribonucleotide degradation, AMP => Urate +M00959:Guanine ribonucleotide degradation, GMP => Urate +M00960:Lysine degradation, bacteria, L-lysine => D-lysine => succinate +M00961:Betacyanin biosynthesis, L-tyrosine => amaranthin +M00962:Psilocybin biosynthesis, tryptophan => psilocybin +M00963:Chanoclavine aldehyde biosynthesis, tryptophan => chanoclavine-I aldehyde +M00964:Fumigaclavine biosynthesis, chanoclavine-I aldehyde => fumigaclavine C +M00965:Vinblastine biosynthesis, geissoschizine => vinblastine +M00966:Equol biosynthesis, daidzein => equol +M00967:Flavone degradation, luteolin/apigenin => DHCA/phloretate +M00968:Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate +M00969:Fumagillin biosynthesis, farnesyl-PP => fumagillin +M00970:Proline degradation, proline => glutamate +M00971:QS-7 biosynthesis, 2,3-epoxysqualene => QS-7 +M00972:Proline metabolism +M00973:Anammox, nitrite + ammonia => nitrogen +M00974:Betaine metabolism, animals, betaine => glycine +M00975:Betaine degradation, bacteria, betaine => pyruvate +M00976:C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone +M00977:C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone +M00978:Ornithine-ammonia cycle +M00979:Ajmaline biosynthesis, geissoschizine => ajmaline +M00980:Strychnine biosynthesis, geissoschizine => strychnine +M00981:Geissoschizine biosynthesis, tryptophan => geissoschizine +M00982:Methylcitrate cycle +M00983:GPI-anchor remodeling +M00984:Sulfur oxidation, tetrathionate intermediate (S4I) pathway, thiosulfate => sulfur + sulfate + thiosulfate +M00985:Sulfide oxidation, sulfide => sulfur +M00986:Sulfur reduction, sulfur => sulfide +M00987:Assimilatory sulfate reduction, plants, sulfate => H2S +M00988:PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine +M00989:Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol +M00990:Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway, DMSP => methanethiol +M00991:Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway, DMSP => acetyl-CoA +M00992:Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway, DMSP => acrylate => acetyl-CoA +M00993:Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway, DMSP => propionyl-CoA +M00994:UDP-GlcA biosynthesis, myo-inositol => GlcA => UDP-GlcA +M00995:UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc +M00996:UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc +M00997:UDP-Xyl/L-Ara biosynthesis, UDP-Glc => UDP-Xyl => UDP-L-Ala +M00998:UDP-L-Ara biosynthesis, L-Ala => UDP-L-Ala +M00999:UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA +M01000:GDP-Man biosynthesis, Fru-6P => GDP-Man +M01001:GDP-L-Fuc biosynthesis, L-Fuc => GDP-L-Fuc +M01002:UDP-GalNAc biosynthesis, Fru-6P => UDP-GalNAc +M01003:UDP-GlcNAc biosynthesis, GlcNAc => UDP-GlcNAc +M01004:UDP-Galf biosynthesis, UDP-Glc => UDP-Galf +M01005:UDP-XylNAc biosynthesis, UDP-GlcNAc => UDP-XylNAc +M01006:GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N +M01007:CMP-Pse5Ac7Ac biosynthesis, UDP-GlcNAc => CMP-Pse5Ac7Ac +M01008:CMP-8eLeg5Ac7Ac biosynthesis, UDP-GlcNAc => CMP-8eLeg5Ac7Ac +M01009:UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc +M01010:UDP-BacNAc4NAc biosynthesis, UDP-GlcNAc => UDP-BacNAc4NAc +M01011:CMP-Leg5Ac7Ac biosynthesis, UDP-BacNAc4NAc => CMP-Leg5Ac7Ac +M01012:CMP-Leg5Ac7Ala biosynthesis, UDP-GlcNAc => CMP-Leg5Ac7Ala +M01013:Molting hormone biosynthesis, insects, 2,22,25-trideoxyecdysone => ecdysone => 20-hydroxyecdysone +M01014:UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA +M01015:GDP-Man biosynthesis, Man => GDP-Man +M01016:GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc +M01017:GDP-L-Col biosynthesis, GDP-Man => GDP-L-Col +M01018:GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha +M01019:GDP-6-deoxy-Tal biosynthesis, GDP-Man => GDP-6-deoxy-Tal +M01020:GDP-D-Rha4NAc biosynthesis, GDP-Man => GDP-D-Rha4N => GDP-D-Rha4NAc +M01021:UDP-L-Rha biosynthesis, UDP-Glc => UDP-L-Rha +M01022:dTDP-6-deoxy-L-Tal biosynthesis, Glc-1P => dTDP-6-deoxy-L-Tal +M01023:dTDP-D-Fuc3NAc biosynthesis, Glc-1P => dTDP-D-Fuc3NAc +M01024:dTDP-Qui3NAc biosynthesis, Glc-1P => dTDP-Qui3NAc +M01025:dTDP-D-Fuc4NAc biosynthesis, Glc-1P => dTDP-D-Fuc4NAc +M01026:dTDP-Qui4NAc biosynthesis, Glc-1P => dTDP-Qui4NAc +M01027:dTDP-D-Fucf biosynthesis, Glc-1P => dTDP-D-Fucf +M01028:GDP-DDmanHep biosynthesis, sedoheptulose-7P => GDP-DDmanHep +M01029:CDP-Tyv biosynthesis, Glc-1P => CDP-Par => CDP-Tyv +M01030:CDP-Abe biosynthesis, Glc-1P => CDP-Abe +M01031:CDP-Asc biosynthesis, Glc-1P => CDP-Asc +M01032:UDP-D-FucNAc biosynthesis, UDP-GlcNAc => UDP-D-FucNAc +M01033:UDP-yelosamine biosynthesis, UDP-GlcNAc => UDP-yelosamine +M01034:GDP-D-Rha4NFormyl biosynthesis, GDP-Man => GDP-D-Rha4N => GDP-D-Rha4NFormyl +M01035:UDP-ManNAc3NAcA biosynthesis, UDP-GlcNAc => UDP-ManNAc3NAcA +M01036:UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA +M01037:UDP-D-FucNAc4N biosynthesis, UDP-GlcNAc => UDP-D-FucNAc4N +M01038:Staphyloxanthin biosynthesis, bacteria, farnesyl-PP => staphyloxanthin +M01039:Spirilloxanthin biosynthesis, bacteria, lycopene => spirilloxanthin +M01040:Lutein biosynthesis, plants, lycopene => lutein +M01041:Bacterioruberin biosynthesis, archaea, lycopene => bacterioruberin +M01042:Neurosporaxanthin biosynthesis, fungi, lycopene => neurosporaxanthin +M01043:Okenone biosynthesis, bacteria, lycopene => okenone +M01044:Astaxanthin biosynthesis, beta-carotene => astaxanthin +M01045:Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin +M01046:Xanthophyll cycle +M01047:Juvenile hormone biosynthesis, insects, farnesyl-PP => juvenile hormone III
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input_file.tabular Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,2 @@ +P1 K00812 K12252 K00003 K02446 K11532 K00574 K02939 K02963 +P2 K02990 K19302 K00645
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input_list.txt Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,1 @@ +K00001,K00002,K00003
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summary.kegg_contigs.with_weights.tsv Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,10 @@ +module_accession completeness pathway_name pathway_class matching_ko missing_ko +M00082 25.0 Fatty acid biosynthesis, initiation Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.25) K00648(0.25),K11262(0.5) +M00018 20.0 Threonine biosynthesis, aspartate => homoserine => threonine Pathway modules; Amino acid metabolism; Serine and threonine metabolism K00003(0.2) K00133(0.2),K00872(0.2),K00928(0.2),K01733(0.2) +M00165 18.18 Reductive pentose phosphate cycle (Calvin cycle) Pathway modules; Energy metabolism; Carbon fixation K02446(0.09),K11532(0.09) K00615(0.09),K00855(0.09),K00927(0.09),K01601(0.09),K01623(0.09),K01783(0.09),K01803(0.09),K01807(0.09),K05298(0.09) +M00017 14.29 Methionine biosynthesis, aspartate => homoserine => methionine Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism K00003(0.14) K00133(0.14),K00548(0.14),K00651(0.14),K00928(0.14),K01739(0.14),K01760(0.14) +M00885 11.11 Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA) Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.11) K02078(0.33),K11263(0.06),K11608(0.11),K11609(0.08),K11610(0.08),K11611(0.08),K18472(0.06),K27689(0.08) +M00886 11.11 Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA and KasB) Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.11) K02078(0.33),K11263(0.06),K11608(0.11),K11609(0.03),K11610(0.03),K11611(0.03),K18472(0.06),K27070(0.03),K27071(0.03),K27072(0.03),K27073(0.03) +M00873 8.33 Fatty acid biosynthesis in mitochondria, animals Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.08) K03955(0.08),K07512(0.17),K09458(0.17),K11539(0.08),K13370(0.08),K18660(0.17),K22540(0.17) +M00874 8.33 Fatty acid biosynthesis in mitochondria, fungi Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.08) K00059(0.17),K03955(0.08),K07512(0.17),K09458(0.17),K11262(0.17),K22541(0.17) +M00003 7.14 Gluconeogenesis, oxaloacetate => fructose-6P Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism K02446(0.07) K00134(0.14),K00927(0.14),K01596(0.14),K01623(0.07),K01689(0.14),K01803(0.14),K01834(0.14)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summary.kegg_pathways.tsv Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,5 @@ +module_accession completeness pathway_name pathway_class matching_ko missing_ko +M00018 20.0 Threonine biosynthesis, aspartate => homoserine => threonine Pathway modules; Amino acid metabolism; Serine and threonine metabolism K00003 K00133,K00872,K00928,K01733 +M00014 14.29 Glucuronate pathway (uronate pathway) Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism K00002 K00012,K00854,K03331,K05351,K12447,K13247,K16190 +M00017 14.29 Methionine biosynthesis, aspartate => homoserine => methionine Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism K00003 K00133,K00548,K00651,K00928,K01739,K01760 +M00129 14.29 Ascorbate biosynthesis, animals, glucose-1P => ascorbate Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism K00002 K00012,K00103,K00699,K00963,K01053,K01195
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summary.kegg_pathways.with_wreights.tsv Fri Dec 05 17:34:32 2025 +0000 @@ -0,0 +1,10 @@ +module_accession completeness pathway_name pathway_class matching_ko missing_ko +M00082 25.0 Fatty acid biosynthesis, initiation Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.25) K00648(0.25),K11262(0.5) +M00018 20.0 Threonine biosynthesis, aspartate => homoserine => threonine Pathway modules; Amino acid metabolism; Serine and threonine metabolism K00003(0.2) K00133(0.2),K00872(0.2),K00928(0.2),K01733(0.2) +M00165 18.18 Reductive pentose phosphate cycle (Calvin cycle) Pathway modules; Energy metabolism; Carbon fixation K02446(0.09),K11532(0.09) K00615(0.09),K00855(0.09),K00927(0.09),K01601(0.09),K01623(0.09),K01783(0.09),K01803(0.09),K01807(0.09),K05298(0.09) +M00017 14.29 Methionine biosynthesis, aspartate => homoserine => methionine Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism K00003(0.14) K00133(0.14),K00548(0.14),K00651(0.14),K00928(0.14),K01739(0.14),K01760(0.14) +M00885 11.11 Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA) Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.11) K02078(0.33),K11263(0.06),K11608(0.11),K11609(0.08),K11610(0.08),K11611(0.08),K18472(0.06),K27689(0.08) +M00886 11.11 Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA and KasB) Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.11) K02078(0.33),K11263(0.06),K11608(0.11),K11609(0.03),K11610(0.03),K11611(0.03),K18472(0.06),K27070(0.03),K27071(0.03),K27072(0.03),K27073(0.03) +M00873 8.33 Fatty acid biosynthesis in mitochondria, animals Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.08) K03955(0.08),K07512(0.17),K09458(0.17),K11539(0.08),K13370(0.08),K18660(0.17),K22540(0.17) +M00874 8.33 Fatty acid biosynthesis in mitochondria, fungi Pathway modules; Lipid metabolism; Fatty acid metabolism K00645(0.08) K00059(0.17),K03955(0.08),K07512(0.17),K09458(0.17),K11262(0.17),K22541(0.17) +M00003 7.14 Gluconeogenesis, oxaloacetate => fructose-6P Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism K02446(0.07) K00134(0.14),K00927(0.14),K01596(0.14),K01623(0.07),K01689(0.14),K01803(0.14),K01834(0.14)