comparison filter-below-abund.py @ 5:a02efb62565b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba

4:5a2da133262a

# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# Contact: [e-mail]
from __future__ import print_function
import sys
import os
import khmer
from khmer.thread_utils import ThreadedSequenceProcessor, verbose_fasta_iter

WORKER_THREADS = 8
GROUPSIZE = 100

CUTOFF = 50

###


def main():
    counting_ht = sys.argv[1]
    infiles = sys.argv[2:]

5:a02efb62565b

# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# Contact: [e-mail]
from __future__ import print_function

import os
import sys

import khmer
from khmer.thread_utils import ThreadedSequenceProcessor, verbose_fasta_iter

WORKER_THREADS = 8
GROUPSIZE = 100
CUTOFF = 50


def main():
    counting_ht = sys.argv[1]
    infiles = sys.argv[2:]