Mercurial > repos > iuc > khmer_abundance_distribution

comparison abundance-dist.xml @ 10:e699e2747356 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 238d0992c63de53623c4fc05eec8bd8d67001997
author iuc
date Thu, 03 Oct 2024 13:45:57 +0000
parents 7624945cacd3
children
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9:7624945cacd3 10:e699e2747356
1 <tool id="khmer_abundance_distribution" name="khmer: Abundance Distribution" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="khmer_abundance_distribution" name="khmer: Abundance Distribution" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description> 2 <description>
3 Calculate abundance distribution of k-mers using pre-made k-mer countgraphs 3 Calculate abundance distribution of k-mers using pre-made k-mer countgraphs
4 </description> 4 </description>
5 <expand macro="bio_tools"/>
6 <macros> 5 <macros>
7 <token name="@BINARY@">abundance-dist.py</token> 6 <token name="@BINARY@">abundance-dist.py</token>
8 <import>macros.xml</import> 7 <import>macros.xml</import>
9 </macros> 8 </macros>
9 <expand macro="bio_tools"/>
10 <expand macro="requirements" /> 10 <expand macro="requirements" />
11 <expand macro="stdio" /> 11 <expand macro="stdio" />
12 <expand macro="version" /> 12 <expand macro="version" />
13 <command><![CDATA[ 13 <command><![CDATA[
14 set -u && 14 set -u &&
49 <param name="bigcount" value="false" /> 49 <param name="bigcount" value="false" />
50 <output name="output_histogram_filename"> 50 <output name="output_histogram_filename">
51 <assert_contents> 51 <assert_contents>
52 <has_text text="1,96,96,0.98" /> 52 <has_text text="1,96,96,0.98" />
53 <has_text text="255,2,98,1.0" /> 53 <has_text text="255,2,98,1.0" />
54 </assert_contents> 54 </assert_contents>
55 </output> 55 </output>
56 </test> 56 </test>
57 </tests> 57 </tests>
58 <help><![CDATA[ 58 <help><![CDATA[
59 Calculate abundance distribution of the k-mers in the sequence file using a 59 Calculate abundance distribution of the k-mers in the sequence file using a
60 pre-made k-mer countgraph. 60 pre-made k-mer countgraph.
61
62 @ABUNDANCE_HISTOGRAM_OUTPUT_HELP@
61 63
62 @HELP_FOOTER@ 64 @HELP_FOOTER@
63 ]]> 65 ]]>
64 </help> 66 </help>
65 <citations> 67 <citations>