# HG changeset patch
# User iuc
# Date 1616535076 0
# Node ID 06d1d91c67e501d3d289b31835a1fe6f9e4e5072
# Parent  77410799e8e93c964aaf2b96eec8753899b534e1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 14ea2dc5ef36219c908ed64b256794711ce7b902"

diff -r 77410799e8e9 -r 06d1d91c67e5 count-median.xml
--- a/count-median.xml	Wed Dec 18 16:02:57 2019 -0500
+++ b/count-median.xml	Tue Mar 23 21:31:16 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="khmer_count_median" name="khmer: Count Median" version="@WRAPPER_VERSION@@TOOL_VERSION@">
+<tool id="khmer_count_median" name="khmer: Count Median" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Count the median/avg k-mer abundance for each sequence</description>
     <macros>
         <token name="@BINARY@">count-median.py</token>
diff -r 77410799e8e9 -r 06d1d91c67e5 macros.xml
--- a/macros.xml	Wed Dec 18 16:02:57 2019 -0500
+++ b/macros.xml	Tue Mar 23 21:31:16 2021 +0000
@@ -1,9 +1,10 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">3.0.0a3</token>
-    <token name="@TOOL_VERSION@">+galaxy1</token>
+    <token name="@TOOL_VERSION@">3.0.0a3</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@PROFILE@">20.01</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@WRAPPER_VERSION@">khmer</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">khmer</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -75,7 +76,7 @@
             help="Put in order of precedence such as longest reads first." />
     </xml>
     <xml name="input_sequence_filename">
-        <param  name="input_sequence_filename" type="data" format="fasta,fastq"
+        <param  name="input_sequence_filename" type="data" format="fasta,fastq,fasta.gz,fastq.gz"
             label="Sequence in FASTA or FASTQ format" />
     </xml>
     <xml name="input_countgraph_filename">
diff -r 77410799e8e9 -r 06d1d91c67e5 test-data/test-abund-read-2.fq.gz
Binary file test-data/test-abund-read-2.fq.gz has changed