# HG changeset patch # User iuc # Date 1485027809 18000 # Node ID d9cc87dfec6e84e1c4a2ca578650a39f443321f5 # Parent fadfb386c87696473bee16d97b1d9b2eb8cca8e6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba diff -r fadfb386c876 -r d9cc87dfec6e filter-below-abund.py --- a/filter-below-abund.py Mon Nov 14 17:50:50 2016 -0500 +++ b/filter-below-abund.py Sat Jan 21 14:43:29 2017 -0500 @@ -34,18 +34,17 @@ # # Contact: khmer-project@idyll.org from __future__ import print_function + +import os import sys -import os + import khmer from khmer.thread_utils import ThreadedSequenceProcessor, verbose_fasta_iter WORKER_THREADS = 8 GROUPSIZE = 100 - CUTOFF = 50 -### - def main(): counting_ht = sys.argv[1]