comparison do-partition.xml @ 9:8388fe31d604 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 238d0992c63de53623c4fc05eec8bd8d67001997

8:5a0fa29951ae

<tool id="khmer_partition" name="khmer: Sequence partition all-in-one" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>Load, partition, and annotate sequences</description>
    <expand macro="bio_tools"/>
    <macros>
        <token name="@BINARY@">do-partition.py</token>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version" />
    <command><![CDATA[
set -u &&

    <inputs>
        <expand macro="input_sequences_filenames" />
        <expand macro="tableinputs" />
    </inputs>
    <outputs>
        <data name="information" format="txt" from_work_dir="output.info" label="${tool.name} on ${on_string}: summary." />
        <expand macro="output_sequences" extension="part"/>
    </outputs>
    <tests>
        <test>
            <param name="inputs" value="random-20-a.fa"/>
            <output_collection name="sequences" type="list">
                <element name="random-20-a.fa" file="random-20-a.fa.part" />
            </output_collection>
        </test>
    </tests>

9:8388fe31d604

<tool id="khmer_partition" name="khmer: Sequence partition all-in-one" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>Load, partition, and annotate sequences</description>
    <macros>
        <token name="@BINARY@">do-partition.py</token>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version" />
    <command><![CDATA[
set -u &&

    <inputs>
        <expand macro="input_sequences_filenames" />
        <expand macro="tableinputs" />
    </inputs>
    <outputs>
        <data name="information" format="txt" from_work_dir="output/output.info" label="${tool.name} on ${on_string}: summary" />
        <expand macro="output_sequences" extension="part"/>
    </outputs>
    <tests>
        <test>
            <param name="inputs" value="random-20-a.fa"/>
            <output name="information">
                <assert_contents>
                    <has_text text="1 subsets total"/>
                </assert_contents>
            </output>
            <output_collection name="sequences" type="list">
                <element name="random-20-a.fa" file="random-20-a.fa.part" />
            </output_collection>
        </test>
    </tests>