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annotate test-data/Kleborate_results.txt @ 3:a7c43271312c draft default tip

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planemo upload for repository https://github.com/katholt/Kleborate commit ebbb4da7c0c0176df539f9baa7c9323d9ff5f201
author iuc
date Tue, 31 Oct 2023 16:31:44 +0000
parents 383036561810
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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383036561810 planemo upload for repository https://github.com/katholt/Kleborate commit 7a486326f6d0ca87c1c41e857732319d31372799
iuc
parents:
diff changeset
1 strain species species_match contig_count N50 largest_contig total_size ambiguous_bases QC_warnings ST virulence_score resistance_score num_resistance_classes num_resistance_genes Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus K_type K_locus_problems K_locus_confidence K_locus_identity K_locus_missing_genes O_locus O_type O_locus_problems O_locus_confidence O_locus_identity O_locus_missing_genes AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits Chr_ST gapA infB mdh pgi phoE rpoB tonB ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA clbA clbB clbC clbD clbE clbF clbG clbH clbI clbL clbM clbN clbO clbP clbQ iucA iucB iucC iucD iutA iroB iroC iroD iroN rmpA rmpD rmpC spurious_virulence_hits
383036561810 planemo upload for repository https://github.com/katholt/Kleborate commit 7a486326f6d0ca87c1c41e857732319d31372799
iuc
parents:
diff changeset
2 KP011_S63.scfd unknown 48 50378 86784 922210 yes (425) ambiguous_bases NA 0 0 1 1 - 0 - 0 - 0 - 0 - 0 - wzi114 unknown (KL50) unknown (K50) -+* None 90.61% KL50_05_wbaZ,KL50_06_wbaP,KL50_07_wcuU,KL50_08_wcuH,KL50_09_wzx,KL50_10 unknown (O12) unknown (O12) - None 72.95% O12_01_rfbB,O12_02_rfbA,O12_03_rfbD,O12_04_rfbC,O12_05_wbbL,O12_06_wzm,O12_07_wzt,O12_08_wbbB - - - - - - - - - tet(D) - - - - - - - SHV-1^ - - - - - - NA - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
383036561810 planemo upload for repository https://github.com/katholt/Kleborate commit 7a486326f6d0ca87c1c41e857732319d31372799
iuc
parents:
diff changeset
3 KP012_S64.scfd unknown 54 48797 70916 961311 yes (413) ambiguous_bases NA 0 0 0 0 - 0 - 0 - 0 - 0 - 0 - - KL125 unknown (KL125) -* Good 90.45% KL125_16,KL125_17_gnd,KL125_18_ugd unknown (O3/O3a) unknown (O3/O3a) - None 0.00% O3/O3a_01_manC,O3/O3a_02_manB,O3/O3a_03_wzm,O3/O3a_04_wzt,O3/O3a_05_wbdD,O3/O3a_06_wbdA,O3/O3a_07_wbdB,O3/O3a_08_wbdC - - - - - - - - - - - - - - - - - - - - - - - - NA - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -