Mercurial > repos > iuc > kleborate

comparison test-data/Kleborate_results_vanilla.txt @ 0:383036561810 draft

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planemo upload for repository https://github.com/katholt/Kleborate commit 7a486326f6d0ca87c1c41e857732319d31372799
author iuc
date Fri, 09 Sep 2022 13:15:07 +0000
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-1:000000000000 0:383036561810
1 strain species species_match contig_count N50 largest_contig total_size ambiguous_bases QC_warnings ST virulence_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus Chr_ST gapA infB mdh pgi phoE rpoB tonB ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA clbA clbB clbC clbD clbE clbF clbG clbH clbI clbL clbM clbN clbO clbP clbQ iucA iucB iucC iucD iutA iroB iroC iroD iroN rmpA rmpD rmpC spurious_virulence_hits
2 KP011_S63.scfd unknown 48 50378 86784 922210 yes (425) ambiguous_bases NA 0 - 0 - 0 - 0 - 0 - 0 - wzi114 KL30 (KL2, KL8, KL111) NA - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3 KP012_S64.scfd unknown 54 48797 70916 961311 yes (413) ambiguous_bases NA 0 - 0 - 0 - 0 - 0 - 0 - - - NA - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -