Mercurial > repos > iuc > kleborate

diff test-data/Kleborate_results.txt @ 0:383036561810 draft
planemo upload for repository https://github.com/katholt/Kleborate commit 7a486326f6d0ca87c1c41e857732319d31372799
author: iuc
date: Fri, 09 Sep 2022 13:15:07 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Kleborate_results.txt	Fri Sep 09 13:15:07 2022 +0000
@@ -0,0 +1,3 @@
+strain	species	species_match	contig_count	N50	largest_contig	total_size	ambiguous_bases	QC_warnings	ST	virulence_score	resistance_score	num_resistance_classes	num_resistance_genes	Yersiniabactin	YbST	Colibactin	CbST	Aerobactin	AbST	Salmochelin	SmST	RmpADC	RmST	rmpA2	wzi	K_locus	K_type	K_locus_problems	K_locus_confidence	K_locus_identity	K_locus_missing_genes	O_locus	O_type	O_locus_problems	O_locus_confidence	O_locus_identity	O_locus_missing_genes	AGly_acquired	Col_acquired	Fcyn_acquired	Flq_acquired	Gly_acquired	MLS_acquired	Phe_acquired	Rif_acquired	Sul_acquired	Tet_acquired	Tgc_acquired	Tmt_acquired	Bla_acquired	Bla_inhR_acquired	Bla_ESBL_acquired	Bla_ESBL_inhR_acquired	Bla_Carb_acquired	Bla_chr	SHV_mutations	Omp_mutations	Col_mutations	Flq_mutations	truncated_resistance_hits	spurious_resistance_hits	Chr_ST	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ybtS	ybtX	ybtQ	ybtP	ybtA	irp2	irp1	ybtU	ybtT	ybtE	fyuA	clbA	clbB	clbC	clbD	clbE	clbF	clbG	clbH	clbI	clbL	clbM	clbN	clbO	clbP	clbQ	iucA	iucB	iucC	iucD	iutA	iroB	iroC	iroD	iroN	rmpA	rmpD	rmpC	spurious_virulence_hits
+KP011_S63.scfd	unknown		48	50378	86784	922210	yes (425)	ambiguous_bases	NA	0	0	1	1	-	0	-	0	-	0	-	0	-	0	-	wzi114	unknown (KL50)	unknown (K50)	-+*	None	90.61%	KL50_05_wbaZ,KL50_06_wbaP,KL50_07_wcuU,KL50_08_wcuH,KL50_09_wzx,KL50_10	unknown (O12)	unknown (O12)	-	None	72.95%	O12_01_rfbB,O12_02_rfbA,O12_03_rfbD,O12_04_rfbC,O12_05_wbbL,O12_06_wzm,O12_07_wzt,O12_08_wbbB	-	-	-	-	-	-	-	-	-	tet(D)	-	-	-	-	-	-	-	SHV-1^	-	-	-	-	-	-	NA	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
+KP012_S64.scfd	unknown		54	48797	70916	961311	yes (413)	ambiguous_bases	NA	0	0	0	0	-	0	-	0	-	0	-	0	-	0	-	-	KL125	unknown (KL125)	-*	Good	90.45%	KL125_16,KL125_17_gnd,KL125_18_ugd	unknown (O3/O3a)	unknown (O3/O3a)	-	None	0.00%	O3/O3a_01_manC,O3/O3a_02_manB,O3/O3a_03_wzm,O3/O3a_04_wzt,O3/O3a_05_wbdD,O3/O3a_06_wbdA,O3/O3a_07_wbdB,O3/O3a_08_wbdC	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	NA	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-