Mercurial > repos > iuc > kofamscan
comparison tool_data_table_conf.xml.sample @ 3:c3c46f14c7a4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kofamscan commit db30370820c68a8add7974d70ad04585cea5b084
author | iuc |
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date | Mon, 22 Apr 2024 14:41:54 +0000 |
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2:95c71179a054 | 3:c3c46f14c7a4 |
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1 <?xml version="1.0"?> | |
2 <tables> | |
3 <!-- versioned data can be downloaded from | |
4 ftp://ftp.genome.jp/pub/db/kofam/ or https://www.genome.jp/ftp/db/kofam/ | |
5 see also https://www.genome.jp/tools/kofamkoala/. | |
6 | |
7 the downloads contain ko_list.gz and profiles.tar.gz for each version | |
8 the ko_list entry should point to the file extracted from ko_list.gz | |
9 the profile_dir entry should point to the directory extracted from profiles.tar.gz | |
10 | |
11 --> | |
12 <table name="kofam" comment_char="#"> | |
13 <columns>value, name, profile_dir, ko_list</columns> | |
14 <file path="tool-data/kofam.loc" /> | |
15 </table> | |
16 <!-- | |
17 the profile dir contains many K....hmm files and usually two .hal files | |
18 the .hal files are simple text files listing a set of K files (one per line) | |
19 which allow to specify subsets of K files easily | |
20 | |
21 this data table allows to specify these subset files for each entry in | |
22 the kofam datatabe | |
23 - value should be a .hal file in the profiles dir (could also be a K file) | |
24 - name the name shown to the user in the select | |
25 - kofam_value should be equal to the value of the corresoponding entry in kofam | |
26 --> | |
27 <table name="kofam_subset" comment_char="#"> | |
28 <columns>value, name, kofam_value</columns> | |
29 <file path="tool-data/kofam_subset.loc" /> | |
30 </table> | |
31 </tables> |