diff tool_data_table_conf.xml.sample @ 3:c3c46f14c7a4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kofamscan commit db30370820c68a8add7974d70ad04585cea5b084

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Mon Apr 22 14:41:54 2024 +0000
@@ -0,0 +1,31 @@
+<?xml version="1.0"?>
+<tables>
+    <!-- versioned data can be downloaded from
+        ftp://ftp.genome.jp/pub/db/kofam/ or https://www.genome.jp/ftp/db/kofam/
+        see also https://www.genome.jp/tools/kofamkoala/.
+        
+        the downloads contain ko_list.gz and profiles.tar.gz for each version
+        the ko_list entry should point to the file extracted from ko_list.gz
+        the profile_dir entry should point to the directory extracted from profiles.tar.gz
+        
+         -->
+    <table name="kofam" comment_char="#">
+        <columns>value, name, profile_dir, ko_list</columns>
+        <file path="tool-data/kofam.loc" />
+    </table>
+    <!-- 
+        the profile dir contains many K....hmm files and usually two .hal files
+        the .hal files are simple text files listing a set of K files (one per line)
+        which allow to specify subsets of K files easily
+
+        this data table allows to specify these subset files for each entry in
+        the kofam datatabe
+        - value should be a .hal file in the profiles dir (could also be a K file)
+        - name the name shown to the user in the select 
+        - kofam_value should be equal to the value of the corresoponding entry in kofam
+        -->
+    <table name="kofam_subset" comment_char="#">
+        <columns>value, name, kofam_value</columns>
+        <file path="tool-data/kofam_subset.loc" />
+    </table>
+</tables>