Mercurial > repos > iuc > kofamscan
view tool_data_table_conf.xml.sample @ 3:c3c46f14c7a4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kofamscan commit db30370820c68a8add7974d70ad04585cea5b084
author | iuc |
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date | Mon, 22 Apr 2024 14:41:54 +0000 |
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<?xml version="1.0"?> <tables> <!-- versioned data can be downloaded from ftp://ftp.genome.jp/pub/db/kofam/ or https://www.genome.jp/ftp/db/kofam/ see also https://www.genome.jp/tools/kofamkoala/. the downloads contain ko_list.gz and profiles.tar.gz for each version the ko_list entry should point to the file extracted from ko_list.gz the profile_dir entry should point to the directory extracted from profiles.tar.gz --> <table name="kofam" comment_char="#"> <columns>value, name, profile_dir, ko_list</columns> <file path="tool-data/kofam.loc" /> </table> <!-- the profile dir contains many K....hmm files and usually two .hal files the .hal files are simple text files listing a set of K files (one per line) which allow to specify subsets of K files easily this data table allows to specify these subset files for each entry in the kofam datatabe - value should be a .hal file in the profiles dir (could also be a K file) - name the name shown to the user in the select - kofam_value should be equal to the value of the corresoponding entry in kofam --> <table name="kofam_subset" comment_char="#"> <columns>value, name, kofam_value</columns> <file path="tool-data/kofam_subset.loc" /> </table> </tables>