Mercurial > repos > iuc > kofamscan
changeset 4:2eb7932e91a3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kofamscan commit 431ba943dcd0a584a64f28924396f3508c84f6b9
| author | iuc |
|---|---|
| date | Thu, 25 Apr 2024 20:57:51 +0000 |
| parents | c3c46f14c7a4 |
| children | 8ec7636fa875 |
| files | kofamscan.xml tool-data/kofam_subset.loc.sample |
| diffstat | 2 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/kofamscan.xml Mon Apr 22 14:41:54 2024 +0000 +++ b/kofamscan.xml Thu Apr 25 20:57:51 2024 +0000 @@ -1,8 +1,8 @@ -<tool id="kofamscan" name="KofamScan" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> +<tool id="kofamscan" name="KofamScan" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01"> <description>gene function annotation based on KEGG orthology and HMM</description> <macros> <token name="@TOOL_VERSION@">1.3.0</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <xml name="reportannotation" token_selected=""> <param name="reportannotation" type="boolean" truevalue="--report-unannotated" falsevalue="--no-report-unannotated" checked="@SELECTED@" label="Include sequence name to outputs even if no KOs are assigned?"/> </xml> @@ -95,8 +95,8 @@ <param argument="-T" type="integer" value="1" label="Set threshold scale" help="The score thresholds will be multiplied by this value."/> <conditional name="f_cond"> <param name="f_sel" type="select" label="Select output format"> - <option value="detail" selected="true">Details for each hit (including hits below threshold) (detail)</option> - <option value="detail-tsv">Tab separeted values for detail format (detail-tsv)</option> + <option value="detail">Details for each hit (including hits below threshold) (detail)</option> + <option value="detail-tsv" selected="true">Tab separeted values for detail format (detail-tsv)</option> <option value="mapper">KEGG Mapper compatible format (mapper)</option> <option value="mapper-one-line">KEGG Mapper compatible format, but all hit KOs are listed in one line (mapper-oneline)</option> </param> @@ -333,4 +333,4 @@ <citations> <citation type="doi">10.1093/bioinformatics/btz859</citation> </citations> -</tool> \ No newline at end of file +</tool>
--- a/tool-data/kofam_subset.loc.sample Mon Apr 22 14:41:54 2024 +0000 +++ b/tool-data/kofam_subset.loc.sample Thu Apr 25 20:57:51 2024 +0000 @@ -1,2 +1,1 @@ -#value<tab>name<tab>kofam_value -subset.hal SUBSET test_value \ No newline at end of file +#value<tab>name<tab>kofam_value \ No newline at end of file