Mercurial > repos > iuc > kraken_taxonomy_report
comparison kraken_taxonomy_report.xml @ 1:b97694b21bc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/kraken_taxonomy_report/ commit 3265247e909410db2a6d6087a2c0d3a9885c120c
| author | iuc |
|---|---|
| date | Wed, 23 Nov 2016 03:27:33 -0500 |
| parents | 3f1a0d47ea8d |
| children | 528a1d91b066 |
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| 0:3f1a0d47ea8d | 1:b97694b21bc3 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="kraken_taxonomy_report" name="Kraken taxonomic report" version="0.0.1"> | 2 <tool id="kraken_taxonomy_report" name="Kraken taxonomic report" version="0.0.2"> |
| 3 <description>view report of classification for multiple samples</description> | 3 <description>view report of classification for multiple samples</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="1.66">biopython</requirement> | 5 <requirement type="package" version="1.66">biopython</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <stdio> | 7 <stdio> |
| 60 <option value="--name-id">Node ID</option> | 60 <option value="--name-id">Node ID</option> |
| 61 </param> | 61 </param> |
| 62 <param checked="True" falsevalue="" argument="--sanitize-names" label="Sanitize Names" name="sanitize_names" truevalue="--sanitize-names" type="boolean" help="Replace special chars (\t| |\||\.;) with underscore (_)" /> | 62 <param checked="True" falsevalue="" argument="--sanitize-names" label="Sanitize Names" name="sanitize_names" truevalue="--sanitize-names" type="boolean" help="Replace special chars (\t| |\||\.;) with underscore (_)" /> |
| 63 <param checked="False" falsevalue="" argument="--show-rank" label="Output Rank Name in (second to) last column" name="show_rank" truevalue="--show-rank" type="boolean" /> | 63 <param checked="False" falsevalue="" argument="--show-rank" label="Output Rank Name in (second to) last column" name="show_rank" truevalue="--show-rank" type="boolean" /> |
| 64 <param checked="False" falsevalue="" argument="--taxonomy" label="Output taxonomy in last column" name="taxonomy" truevalue="--taxonomy" type="boolean" /> | 64 <param checked="False" falsevalue="" argument="--taxonomy" label="Output taxonomy in last column" name="taxonomy" truevalue="--taxonomy" type="boolean" /> |
| 65 <param checked="False" falsevalue="" argument="--intermediate" label="Display intermediate ranks" name="intermediate" truevalue="--intermediate" type="boolean" /> | 65 <param checked="True" falsevalue="" argument="--intermediate" label="Display intermediate ranks" name="intermediate" truevalue="--intermediate" type="boolean" /> |
| 66 <conditional name="cluster"> | 66 <conditional name="cluster"> |
| 67 <param argument="--cluster" help="Combines rows under the selected taxon and reports only selected rank." label="Cluster by taxonomic rank" name="cluster" type="select"> | 67 <param argument="--cluster" help="Combines rows under the selected taxon and reports only selected rank." label="Cluster by taxonomic rank" name="cluster" type="select"> |
| 68 <option value="Superkingdom">Superkingdom</option> | 68 <option value="Superkingdom">Superkingdom</option> |
| 69 <option value="Kingdom">Kingdom</option> | 69 <option value="Kingdom">Kingdom</option> |
| 70 <option value="Subkingdom">Subkingdom</option> | 70 <option value="Subkingdom">Subkingdom</option> |