Mercurial > repos > iuc > krakentools_alpha_diversity
comparison alpha_diversity.xml @ 5:78b69342c280 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit 60eb96ad3ff782075ca1f29e26ffe5487bbb93ed
| author | iuc |
|---|---|
| date | Fri, 22 Nov 2024 09:27:53 +0000 |
| parents | e400e5ef0e7c |
| children |
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| 4:bab112ba9d62 | 5:78b69342c280 |
|---|---|
| 2 <description>from the Bracken abundance estimation file</description> | 2 <description>from the Bracken abundance estimation file</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="biotools"/> | 6 <expand macro="biotools"/> |
| 7 <expand macro="requirements"> | 7 <expand macro="requirements"/> |
| 8 <requirement type="package" version="1.9.3">scipy</requirement> | |
| 9 </expand> | |
| 10 <expand macro="version"/> | 8 <expand macro="version"/> |
| 11 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 12 alpha_diversity.py | 10 alpha_diversity.py |
| 13 --filename '$filename' | 11 --filename '$filename' |
| 14 --alpha '$alpha' | 12 --alpha '$alpha' |
| 31 <test> | 29 <test> |
| 32 <param name="filename" value="bracken_abundance.tabular"/> | 30 <param name="filename" value="bracken_abundance.tabular"/> |
| 33 <param name="alpha" value="Sh"/> | 31 <param name="alpha" value="Sh"/> |
| 34 <output name="output" ftype="txt"> | 32 <output name="output" ftype="txt"> |
| 35 <assert_contents> | 33 <assert_contents> |
| 36 <has_text text="Shannon's diversity: 4.194127607417342"/> | 34 <has_text text="Shannon's diversity: 4.194127607417341"/> |
| 37 </assert_contents> | 35 </assert_contents> |
| 38 </output> | 36 </output> |
| 39 </test> | 37 </test> |
| 40 <test> | 38 <test> |
| 41 <param name="filename" value="bracken_abundance.tabular"/> | 39 <param name="filename" value="bracken_abundance.tabular"/> |