Mercurial > repos > iuc > krakentools_alpha_diversity
view test-data/extract_kraken_reads/krakenU.report @ 4:bab112ba9d62 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit f37828f1d6b9c53cc2e7ea334ee9a2fb8dbd8711
| author | iuc |
|---|---|
| date | Tue, 20 Jun 2023 20:04:12 +0000 |
| parents | 9d0330e23bfd |
| children |
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# KrakenUniq v0.5.8 DATE:2021-09-21T05:28:21Z DB:./db1 ./db2 ./db3 ./db4 ./db5 ./db6 ./db7 ./db8 ./db9 DB_SIZE:43487608 WD:/tmp/nxf.LS2KtRM0fv # CL:perl /opt/conda/envs/nf/bin/krakenuniq --db db1 --db db2 --db db3 --db db4 --db db5 --db db6 --db db7 --db db8 --db db9 --threads 64 --report-file lowfilt.report.pre --output lowfilt.results --paired lowfilt.qfilt.R1_val_1.rmspikein.fq lowfilt.qfilt.R2_val_2.rmspikein.fq % reads taxReads kmers dup cov taxID rank taxName 2.18 1681 1681 12617084 1.2 NA 0 no rank unclassified 97.82 75426 277 1886797 1.23 7.482e-05 1 no rank root 95.62 73730 29 1742828 1.21 7.188e-05 131567 no rank cellular organisms 93.26 71908 380 1704354 1.21 9.69e-05 2 superkingdom Bacteria 44.5 34310 59 797434 1.21 0.0001228 1783272 clade Terrabacteria group 29.93 23076 82 557233 1.2 0.0002134 1239 phylum Firmicutes 20.77 16015 73 379200 1.22 0.0003627 91061 class Bacilli 12.81 9880 45 253369 1.19 0.0003098 1385 order Bacillales 4.103 3164 10 102496 1.16 0.00027 186817 family Bacillaceae 4.088 3152 963 100677 1.16 0.001024 1386 genus Bacillus 2.521 1944 1944 46683 1.13 0.07898 1963032 species Bacillus intestinalis 0.284 219 150 4091 1.26 0.0002188 86661 species group Bacillus cereus group 0.05447 42 42 1083 1.29 0.001994 2026186 species Bacillus paranthracis 0.009078 7 7 226 1.29 0.0004816 2026188 species Bacillus tropicus 0.007781 6 6 208 1.21 0.00036 2026190 species Bacillus mobilis 0.005188 4 4 170 1.21 4.36e-05 1396 species Bacillus cereus 0.003891 3 3 75 1.29 0.0001177 2026189 species Bacillus albus 0.002594 2 2 56 1.16 0.0001006 2026193 species Bacillus nitratireducens 0.002594 2 2 62 1.27 0.0002833 1392 species Bacillus anthracis 0.001297 1 1 44 1.27 0.0001063 2026191 species Bacillus luti 0.001297 1 1 66 1.26 8.275e-05 1890302 species Bacillus wiedmannii 0.001297 1 1 70 1.19 5.253e-05 1428 species Bacillus thuringiensis 0.01816 14 0 1824 1.22 5.778e-05 185979 no rank unclassified Bacillus (in: Bacteria) 0.01167 9 9 1141 1.25 0.002064 2597270 species Bacillus sp. P16(2019) 0.006484 5 5 681 1.19 4.507e-05 1409 species Bacillus sp. (in: Bacteria) 0.01038 8 6 3457 1.41 0.0003944 653685 species group Bacillus subtilis group 0.002594 2 2 1721 1.15 0.002671 483913 species Bacillus inaquosorum 0.002594 2 2 119 1.18 0.0002753 230954 species Bacillus thermozeamaize 0.001297 1 1 179 1.23 0.0004264 408580 species Bacillus coahuilensis 0.001297 1 1 61 1.36 0.000156 2039284 species Bacillus fungorum 0.001297 1 0 42 1.17 4.106e-06 84406 genus Virgibacillus 0.001297 1 1 37 1.19 6.655e-05 1638645 species Virgibacillus kapii 0.001297 1 0 5 1 1.141e-06 704093 genus Anaerobacillus 0.001297 1 0 2 1 8.059e-07 2625356 no rank unclassified Anaerobacillus 0.001297 1 1 2 1 8.059e-07 1872506 species Anaerobacillus sp. 3.84 2961 27 58221 1.28 0.001726 90964 family Staphylococcaceae 3.803 2932 321 56780 1.27 0.002658 1279 genus Staphylococcus 1.935 1492 1492 25704 1.26 0.07286 1280 species Staphylococcus aureus 1.414 1090 1090 20177 1.19 0.06293 1282 species Staphylococcus epidermidis 0.01038 8 8 231 1.31 0.0002607 1283 species Staphylococcus haemolyticus 0.007781 6 6 92 1.54 0.0002367 29388 species Staphylococcus capitis 0.005188 4 4 121 1.34 0.0001435 246432 species Staphylococcus equorum 0.003891 3 3 197 1.42 0.0003064 29385 species Staphylococcus saprophyticus 0.002594 2 0 191 1.33 0.0002059 2815305 species group Staphylococcus intermedius group 0.002594 2 2 191 1.33 0.0005719 1986155 species Staphylococcus cornubiensis 0.001297 1 1 4 2.25 1.273e-05 985762 species Staphylococcus agnetis 0.001297 1 1 2 1 3.537e-06 45972 species Staphylococcus pasteuri 0.001297 1 1 207 1.28 0.0006984 33028 species Staphylococcus saccharolyticus 0.001297 1 1 65 1.26 0.0002577 2282419 species Staphylococcus pseudoxylosus 0.001297 1 1 53 1.28 7.542e-05 1293 species Staphylococcus gallinarum 0.001297 1 1 20 1.2 6.233e-05 1281 species Staphylococcus carnosus 0.001297 1 0 108 1.44 3.095e-05 69965 genus Macrococcus 0.001297 1 0 60 1.48 0.0001285 2619255 no rank unclassified Macrococcus 0.001297 1 1 60 1.48 0.0001285 1871621 species Macrococcus sp. 0.001297 1 0 52 1.08 3.132e-05 2803850 genus Mammaliicoccus 0.001297 1 1 30 1.13 4.953e-05 42858 species Mammaliicoccus lentus 2.803 2161 0 53804 1.2 0.00458 186820 family Listeriaceae 2.803 2161 430 53804 1.2 0.004844 1637 genus Listeria 2.187 1686 1686 32642 1.2 0.03524 1639 species Listeria monocytogenes 0.05447 42 0 5653 1.21 0.002214 2642072 no rank unclassified Listeria 0.05447 42 42 5653 1.21 0.002214 1960103 species Listeria sp. 0.002594 2 2 10 1.2 2.441e-05 1640 species Listeria seeligeri 0.001297 1 1 7 1.14 2.225e-05 1642 species Listeria innocua 1.984 1530 59 32783 1.18 0.0001172 186822 family Paenibacillaceae 1.899 1464 3 30923 1.17 0.03542 76632 genus Thermobacillus 1.895 1461 1461 30364 1.17 0.06785 377615 species Thermobacillus composti 0.005188 4 0 113 1.54 0.0003045 2767206 genus Candidatus Reconcilibacillus 0.005188 4 4 113 1.54 0.0003045 1906605 species Candidatus Reconcilbacillus cellulovorans 0.002594 2 0 107 1.29 5.395e-06 55080 genus Brevibacillus 0.001297 1 1 29 1 1.762e-05 54915 species Brevibacillus reuszeri 0.001297 1 0 77 1.4 2.428e-05 2684853 no rank unclassified Brevibacillus 0.001297 1 1 77 1.4 3.358e-05 1882945 species Brevibacillus sp. 0.001297 1 0 211 1.2 9.438e-07 44249 genus Paenibacillus 0.001297 1 1 14 1.36 1.986e-05 1737354 species Paenibacillus radicis 0.02334 18 0 749 1.44 4.451e-05 539002 no rank Bacillales incertae sedis 0.02334 18 0 616 1.44 0.000221 539738 no rank Bacillales Family XI. Incertae Sedis 0.02334 18 0 616 1.44 0.000221 1378 genus Gemella 0.02334 18 0 611 1.44 0.0006785 2624949 no rank unclassified Gemella 0.02334 18 18 611 1.44 0.0006785 1966354 species Gemella sp. 0.001297 1 0 97 1.22 1.966e-06 186818 family Planococcaceae 0.001297 1 0 47 1.23 0.0001369 194985 no rank unclassified Planococcaceae 0.001297 1 1 47 1.23 0.0001369 1953061 species Planococcaceae bacterium UBA3370 7.862 6062 54 119409 1.29 0.0005415 186826 order Lactobacillales 2.788 2150 107 41437 1.35 0.0004208 33958 family Lactobacillaceae 2.624 2023 21 37777 1.33 0.005332 2742598 genus Limosilactobacillus 2.593 1999 1999 36319 1.34 0.1122 1613 species Limosilactobacillus fermentum 0.002594 2 2 577 1.27 0.002744 1450649 species Limosilactobacillus gorillae 0.001297 1 1 22 1.5 4.575e-05 97478 species Limosilactobacillus mucosae 0.02334 18 7 485 1.13 4.516e-05 1578 genus Lactobacillus 0.01038 8 8 117 1.08 0.0005589 1596 species Lactobacillus gasseri 0.003891 3 3 81 1.12 0.0003862 2107999 species Lactobacillus paragasseri 0.001297 1 0 59 1.29 1.226e-05 2767887 genus Ligilactobacillus 0.001297 1 0 55 1.29 0.0002153 2767920 no rank unclassified Ligilactobacillus 0.001297 1 1 55 1.29 0.0002153 2767921 species Ligilactobacillus sp. 0.001297 1 0 22 1.14 7.19e-06 1253 genus Pediococcus 0.001297 1 1 2 2 7.326e-06 319653 species Pediococcus ethanolidurans 2.532 1952 8 37717 1.2 0.0009686 81852 family Enterococcaceae 2.513 1938 47 37239 1.19 0.001227 1350 genus Enterococcus 2.446 1886 1886 35200 1.19 0.04042 1351 species Enterococcus faecalis 0.002594 2 2 62 1.31 8.211e-05 53345 species Enterococcus durans 0.001297 1 1 15 1.2 4.257e-05 214095 species Enterococcus canis 0.001297 1 1 31 1.16 9.541e-05 1640685 species Enterococcus massiliensis 0.001297 1 1 51 1.27 6.459e-05 1353 species Enterococcus gallinarum 0.007781 6 0 253 1.11 4.217e-05 2737 genus Vagococcus 0.007781 6 6 208 1.09 0.0005309 2739 species Vagococcus salmoninarum 2.472 1906 3 39563 1.25 0.0006871 1300 family Streptococcaceae 2.467 1902 321 39278 1.24 0.0007851 1301 genus Streptococcus 1.738 1340 1340 21469 1.27 0.09213 1309 species Streptococcus mutans 0.1881 145 145 2955 1.14 0.009257 1311 species Streptococcus agalactiae 0.06874 53 53 1161 1.15 0.005805 1314 species Streptococcus pyogenes 0.02723 21 15 596 1.25 0.0004456 671232 species group Streptococcus anginosus group 0.007781 6 6 316 1.26 0.0009571 1338 species Streptococcus intermedius 0.006484 5 5 182 1.12 0.001166 1111760 species Streptococcus troglodytae 0.005188 4 4 116 1.16 0.0004834 1339 species Streptococcus macacae 0.002594 2 0 176 1.22 2.336e-05 2608887 no rank unclassified Streptococcus 0.002594 2 2 176 1.22 2.336e-05 1306 species Streptococcus sp. 0.002594 2 2 60 1 0.0002295 149016 species Streptococcus urinalis 0.002594 2 2 49 1.16 1.655e-05 1303 species Streptococcus oralis 0.001297 1 1 21 1.29 5.252e-06 28037 species Streptococcus mitis 0.001297 1 1 5 1 1.906e-05 1917441 species Streptococcus ruminantium 0.001297 1 1 19 1.16 0.0001623 150055 species Streptococcus lutetiensis 0.001297 1 1 23 1.13 4.443e-05 1349 species Streptococcus uberis 0.001297 1 1 6 1 2.214e-05 1317 species Streptococcus downei 0.001297 1 0 120 1.26 0.0001309 119603 species group Streptococcus dysgalactiae group 0.001297 1 1 116 1.27 0.0002219 1334 species Streptococcus dysgalactiae 0.001297 1 1 51 1.49 0.000184 1080071 species Streptococcus orisasini 0.001297 1 0 57 1.02 8.309e-06 1357 genus Lactococcus 0.001297 1 1 13 1 2.958e-05 1940789 species Lactococcus petauri 9.041 6971 11 171755 1.15 0.0001335 186801 class Clostridia 9.015 6951 52 171007 1.15 0.0001428 186802 order Eubacteriales 5.058 3900 12 90727 1.17 0.001943 186807 family Peptococcaceae 5.041 3887 149 90117 1.17 0.00749 79206 genus Desulfosporosinus 3.841 2962 2961 63755 1.18 0.1188 885581 species Desulfosporosinus acidiphilus 0.001297 1 1 166 1.49 0.3144 646529 subspecies Desulfosporosinus acidiphilus SJ4 0.9545 736 736 15090 1.14 0.03799 79209 species Desulfosporosinus meridiei 0.05058 39 0 4163 1.16 0.0005576 2633794 no rank unclassified Desulfosporosinus 0.05058 39 39 4163 1.16 0.0005576 157907 species Desulfosporosinus sp. 0.001297 1 1 467 1.26 0.0008942 476652 species Desulfosporosinus acididurans 0.001297 1 0 65 1.18 1.468e-05 191373 genus Pelotomaculum 0.001297 1 0 45 1.09 1.474e-05 2621639 no rank unclassified Pelotomaculum 0.001297 1 1 36 1.08 8.643e-05 1811696 species Pelotomaculum sp. PtaU1.Bin065 1.757 1355 12 29314 1.18 0.01134 2867375 family Desulfallaceae 1.742 1343 0 28866 1.18 0.03159 2867376 genus Desulfoscipio 1.742 1343 1343 28857 1.18 0.05589 102134 species Desulfoscipio gibsoniae 1.223 943 1 22343 1.24 0.0001332 31979 family Clostridiaceae 1.218 939 51 22058 1.24 0.0002023 1485 genus Clostridium 0.6977 538 538 10683 1.1 0.01695 1492 species Clostridium butyricum 0.3411 263 263 6414 1.3 0.002355 1520 species Clostridium beijerinckii 0.105 81 81 1630 1.16 0.002339 1502 species Clostridium perfringens 0.005188 4 0 419 1.25 1.288e-05 2614128 no rank unclassified Clostridium 0.003891 3 3 70 1.67 0.0001233 2698831 species Clostridium sp. C8-1-8 0.001297 1 1 347 1.17 1.345e-05 1506 species Clostridium sp. 0.002594 2 0 185 1.21 8.067e-06 59619 no rank environmental samples 0.002594 2 2 185 1.21 9.452e-06 59620 species uncultured Clostridium sp. 0.002594 2 0 104 1.08 3.796e-06 189971 no rank unclassified Clostridiaceae 0.002594 2 2 100 1.08 4.109e-06 1898204 species Clostridiaceae bacterium 0.001297 1 0 39 1.18 0.0001061 1403538 genus Fervidicella 0.001297 1 1 39 1.18 0.0001061 655338 species Fervidicella metallireducens 0.7224 557 19 18115 1.07 5.143e-05 186803 family Lachnospiraceae 0.2321 179 2 3869 1.05 0.0004912 841 genus Roseburia 0.2153 166 166 3571 1.05 0.01066 301301 species Roseburia hominis 0.01427 11 11 205 1 0.0005334 166486 species Roseburia intestinalis 0.2023 156 39 5667 1.09 0.001171 2569097 genus Anaerobutyricum 0.1517 117 117 3372 1.1 0.006891 39488 species Anaerobutyricum hallii 0.1945 150 1 5559 1.05 0.001579 207244 genus Anaerostipes 0.1932 149 149 5248 1.05 0.005334 649756 species Anaerostipes hadrus 0.02853 22 11 922 1.05 3.63e-05 572511 genus Blautia 0.01297 10 10 322 1.04 0.0004028 418240 species Blautia wexlerae 0.001297 1 0 78 1.06 5.047e-06 2648079 no rank unclassified Blautia 0.001297 1 1 78 1.06 5.17e-06 1955243 species Blautia sp. 0.02334 18 0 417 1.32 9.825e-05 2676048 genus Schaedlerella 0.02334 18 0 417 1.32 0.0001205 2676056 no rank unclassified Schaedlerella 0.02334 18 18 417 1.32 0.0001205 2676057 species Schaedlerella sp. 0.006484 5 0 85 1.32 1.098e-05 1427378 genus Acetatifactor 0.006484 5 0 85 1.32 1.206e-05 2633901 no rank unclassified Acetatifactor 0.006484 5 5 85 1.32 1.206e-05 1872090 species Acetatifactor sp. 0.003891 3 0 105 1.19 4.022e-05 2005355 genus Faecalimonas 0.003891 3 0 105 1.19 4.85e-05 2624616 no rank unclassified Faecalimonas 0.003891 3 3 105 1.19 4.85e-05 2005356 species Faecalimonas sp. 0.003891 3 0 142 1.27 3.656e-05 1766253 genus Agathobacter 0.003891 3 0 142 1.27 4.025e-05 2641574 no rank unclassified Agathobacter 0.003891 3 3 142 1.27 4.025e-05 2021311 species Agathobacter sp. 0.001297 1 0 36 1 2.281e-05 1918511 genus Frisingicoccus 0.001297 1 0 36 1 2.778e-05 2621361 no rank unclassified Frisingicoccus 0.001297 1 1 36 1 2.778e-05 1918627 species Frisingicoccus sp. 0.001297 1 0 36 1 4.329e-06 1663717 genus Herbinix 0.001297 1 1 36 1 4.501e-05 1564487 species Herbinix hemicellulosilytica 0.1673 129 1 3372 1.08 1.355e-05 216572 family Oscillospiraceae 0.1076 83 1 2037 1.1 0.0003972 35829 genus Acetivibrio 0.105 81 81 1960 1.1 0.004748 1515 species Acetivibrio thermocellus 0.001297 1 1 51 1.14 0.0001065 253314 species Acetivibrio straminisolvens 0.03761 29 0 643 1.06 6.888e-06 1263 genus Ruminococcus 0.03761 29 29 614 1.04 0.001398 438033 species Ruminococcus gauvreauii 0.01945 15 0 402 1.03 5.281e-05 216851 genus Faecalibacterium 0.01945 15 15 347 1.04 0.0001046 853 species Faecalibacterium prausnitzii 0.001297 1 0 29 1 2.162e-06 1508657 genus Ruminiclostridium 0.001297 1 0 22 1 2.527e-06 2627732 no rank unclassified Ruminiclostridium 0.001297 1 1 22 1 2.527e-06 2053608 species Ruminiclostridium sp. 0.01038 8 0 518 1.05 8.98e-06 186806 family Eubacteriaceae 0.01038 8 0 517 1.05 1.1e-05 1730 genus Eubacterium 0.009078 7 0 476 1.05 1.25e-05 2624479 no rank unclassified Eubacterium 0.009078 7 7 476 1.05 1.272e-05 142586 species Eubacterium sp. 0.001297 1 0 28 1.07 1.188e-05 84372 no rank environmental samples 0.001297 1 1 28 1.07 1.351e-05 165185 species uncultured Eubacterium sp. 0.003891 3 0 307 1.17 2.868e-06 50559 no rank environmental samples 0.003891 3 3 307 1.17 2.868e-06 172733 species uncultured Eubacteriales bacterium 0.003891 3 0 233 1.23 2.692e-06 39779 no rank unclassified Eubacteriales 0.003891 3 3 226 1.24 3.501e-06 1898207 species Clostridiales bacterium 0.001297 1 0 31 1.32 9.186e-06 31984 family Heliobacteriaceae 0.001297 1 0 31 1.32 3.199e-05 2697 genus Heliobacterium 0.001297 1 1 31 1.32 6.979e-05 2698 species Heliobacterium chlorum 0.009078 7 0 151 1.53 7.934e-06 68295 order Thermoanaerobacterales 0.009078 7 0 142 1.56 2.336e-05 543371 family Thermoanaerobacterales Family III. Incertae Sedis 0.009078 7 7 142 1.56 4.864e-05 44000 genus Caldicellulosiruptor 0.002594 2 0 146 1.01 2.921e-06 348841 no rank unclassified Clostridia 0.002594 2 2 145 1.01 3.096e-06 2044939 species Clostridia bacterium 0.006484 5 0 189 1.16 4.973e-06 1737404 class Tissierellia 0.006484 5 0 187 1.16 8.056e-06 1737405 order Tissierellales 0.005188 4 0 179 1.17 1.155e-05 1570339 family Peptoniphilaceae 0.002594 2 0 42 1.19 8.729e-06 165779 genus Anaerococcus 0.002594 2 2 37 1.11 0.0001788 33032 species Anaerococcus lactolyticus 0.002594 2 0 132 1.17 0.000145 150022 genus Finegoldia 0.002594 2 0 132 1.17 0.0005686 2619637 no rank unclassified Finegoldia 0.002594 2 2 132 1.17 0.0005686 1981334 species Finegoldia sp. 0.001297 1 0 7 1 1.053e-06 1737406 family Tissierellaceae 0.001297 1 0 6 1 2.148e-06 41273 genus Tissierella 0.001297 1 0 5 1 3.805e-06 2638726 no rank unclassified Tissierella 0.001297 1 1 5 1 5.364e-06 41274 species Tissierella sp. 0.003891 3 0 218 1.05 2.89e-06 909932 class Negativicutes 0.002594 2 0 135 1.07 5.231e-06 1843489 order Veillonellales 0.002594 2 0 135 1.07 5.231e-06 31977 family Veillonellaceae 0.001297 1 0 10 1 1.936e-06 906 genus Megasphaera 0.001297 1 1 7 1 1.735e-05 39029 species Megasphaera cerevisiae 0.001297 1 0 90 1.09 1.763e-05 39948 genus Dialister 0.001297 1 0 90 1.09 2.297e-05 2638756 no rank unclassified Dialister 0.001297 1 1 90 1.09 2.297e-05 1955814 species Dialister sp. 0.001297 1 0 72 1 6.297e-06 1843488 order Acidaminococcales 0.001297 1 0 72 1 6.297e-06 909930 family Acidaminococcaceae 0.001297 1 0 63 1 1.256e-05 33024 genus Phascolarctobacterium 0.001297 1 0 63 1 1.476e-05 2639160 no rank unclassified Phascolarctobacterium 0.001297 1 1 63 1 1.476e-05 2049039 species Phascolarctobacterium sp. 12.35 9523 17 185869 1.32 6.252e-05 201174 phylum Actinobacteria 11.49 8860 24 167245 1.33 6.084e-05 1760 class Actinomycetia 10.95 8443 0 157343 1.32 0.004663 85004 order Bifidobacteriales 10.95 8443 27 157343 1.32 0.004683 31953 family Bifidobacteriaceae 10.91 8416 1299 155909 1.32 0.005482 1678 genus Bifidobacterium 9.121 7033 7033 117156 1.32 0.2406 216816 species Bifidobacterium longum 0.04928 38 38 1455 1.34 0.004579 983706 species Bifidobacterium reuteri 0.03761 29 0 2150 1.33 0.0004631 2608897 no rank unclassified Bifidobacterium 0.03761 29 29 2096 1.34 0.0004825 41200 species Bifidobacterium sp. 0.007781 6 6 347 1.27 0.001512 762210 species Bifidobacterium saguini 0.003891 3 3 320 1.89 0.001038 1685 species Bifidobacterium breve 0.002594 2 2 72 2.39 0.0002602 1680 species Bifidobacterium adolescentis 0.002594 2 2 149 1.27 0.0004416 1630172 species Bifidobacterium hapali 0.001297 1 1 60 2.72 0.0001907 77635 species Bifidobacterium subtile 0.001297 1 1 118 1.49 0.0001844 33905 species Bifidobacterium thermophilum 0.001297 1 1 79 1.43 0.0002544 2020964 species Bifidobacterium margollesii 0.001297 1 1 56 1.41 0.0001826 1333651 species Bifidobacterium moukalabense 0.3956 305 2 6413 1.12 1.376e-05 85007 order Corynebacteriales 0.2931 226 0 4617 1.11 0.00636 316606 family Segniliparaceae 0.2931 226 0 4617 1.11 0.00636 286801 genus Segniliparus 0.2931 226 226 4593 1.11 0.01345 286802 species Segniliparus rotundus 0.07003 54 0 1307 1.17 2.577e-05 1653 family Corynebacteriaceae 0.07003 54 2 1307 1.17 2.577e-05 1716 genus Corynebacterium 0.06225 48 48 1056 1.11 0.002465 1718 species Corynebacterium glutamicum 0.002594 2 2 40 1.65 0.0002388 161889 species Corynebacterium lipophiloflavum 0.001297 1 1 26 1.35 5.994e-05 43770 species Corynebacterium striatum 0.001297 1 1 17 1.35 6.439e-05 1979527 species Corynebacterium kefirresidentii 0.02983 23 0 346 1.14 1.661e-06 1762 family Mycobacteriaceae 0.02464 19 0 293 1.11 2.13e-06 1763 genus Mycobacterium 0.01427 11 0 153 1.11 2.74e-05 120793 species group Mycobacterium avium complex (MAC) 0.01427 11 11 152 1.11 0.0001469 425468 species Mycobacterium arosiense 0.002594 2 2 22 1 4.931e-05 547163 species Mycobacterium vulneris 0.002594 2 2 21 1 1.747e-05 39693 species Mycobacterium porcinum 0.001297 1 1 12 1 1.849e-05 2035343 species Mycobacterium eburneum 0.001297 1 1 7 1 7.068e-06 1783 species Mycobacterium scrofulaceum 0.001297 1 1 7 1 1.136e-05 1430326 species Mycobacterium decipiens 0.001297 1 1 37 1.32 2.558e-05 134601 species Mycobacterium goodii 0.003891 3 0 29 1.24 4.791e-06 1073531 genus Mycolicibacter 0.003891 3 3 29 1.24 6.116e-05 342002 species Mycolicibacter arupensis 0.001297 1 0 18 1.22 3.42e-07 1866885 genus Mycolicibacterium 0.001297 1 1 11 1 1.35e-05 36811 species Mycolicibacterium agri 0.05706 44 0 602 1.85 8.924e-07 85011 order Streptomycetales 0.05706 44 0 602 1.85 8.932e-07 2062 family Streptomycetaceae 0.05577 43 0 593 1.86 9.61e-07 1883 genus Streptomyces 0.05577 43 43 344 2.22 0.0006764 67332 species Streptomyces mutabilis 0.001297 1 0 7 1.14 2.048e-07 2063 genus Kitasatospora 0.001297 1 0 4 1.25 2.339e-07 2633591 no rank unclassified Kitasatospora 0.001297 1 1 4 1.25 2.339e-07 1871188 species Kitasatospora sp. 0.03502 27 0 384 1.03 2.294e-06 85009 order Propionibacteriales 0.03502 27 1 357 1.03 9.701e-06 31957 family Propionibacteriaceae 0.03372 26 4 340 1.03 0.0001956 1912216 genus Cutibacterium 0.02723 21 21 267 1.03 0.001045 1747 species Cutibacterium acnes 0.001297 1 1 21 1 6.345e-05 2559073 species Cutibacterium modestum 0.007781 6 0 158 1.3 3.727e-06 2037 order Actinomycetales 0.007781 6 0 157 1.29 4.09e-06 2049 family Actinomycetaceae 0.002594 2 0 38 1.45 4.809e-05 2692113 genus Gleimia 0.002594 2 2 38 1.45 0.0002009 103618 species Gleimia coleocanis 0.002594 2 0 37 1.11 9.846e-06 2529408 genus Schaalia 0.002594 2 2 36 1.11 4.853e-05 1660 species Schaalia odontolytica 0.002594 2 0 75 1.32 3.673e-06 1654 genus Actinomyces 0.001297 1 0 7 1 1.067e-06 2609248 no rank unclassified Actinomyces 0.001297 1 1 6 1 2.78e-05 712118 species Actinomyces sp. oral taxon 172 0.001297 1 1 54 1.44 7.788e-05 131109 species Actinomyces bowdenii 0.005188 4 1 608 1.3 1.121e-06 85006 order Micrococcales 0.002594 2 0 321 1.36 2.449e-06 1268 family Micrococcaceae 0.001297 1 0 100 1.34 1.973e-06 1663 genus Arthrobacter 0.001297 1 0 88 1.35 2.856e-06 235627 no rank unclassified Arthrobacter 0.001297 1 1 88 1.35 3.06e-06 1667 species Arthrobacter sp. 0.001297 1 0 157 1.25 0.0001908 1164863 genus Enteractinococcus 0.001297 1 1 157 1.25 0.0003436 1837282 species Enteractinococcus helveticum 0.001297 1 0 219 1.26 9.028e-07 85023 family Microbacteriaceae 0.001297 1 0 136 1.29 1.683e-06 33882 genus Microbacterium 0.001297 1 0 115 1.33 2.658e-06 2609290 no rank unclassified Microbacterium 0.001297 1 1 115 1.33 2.658e-06 51671 species Microbacterium sp. 0.003891 3 0 191 1.24 1.29e-06 85008 order Micromonosporales 0.003891 3 0 191 1.24 1.29e-06 28056 family Micromonosporaceae 0.003891 3 0 184 1.25 2.451e-06 1873 genus Micromonospora 0.001297 1 1 6 1.33 1.12e-05 709868 species Micromonospora ureilytica 0.001297 1 0 47 1.15 1.966e-06 2617518 no rank unclassified Micromonospora 0.001297 1 1 47 1.15 1.966e-06 1876 species Micromonospora sp. 0.001297 1 1 34 1.38 5.081e-05 2070366 species Micromonospora deserti 0.002594 2 0 136 1.26 1.079e-05 1217098 order Jiangellales 0.002594 2 0 136 1.26 1.079e-05 1217100 family Jiangellaceae 0.002594 2 0 136 1.26 1.64e-05 281472 genus Jiangella 0.002594 2 2 134 1.27 0.0001792 2670374 species Jiangella anatolica 0.001297 1 0 101 1.41 5.429e-07 85012 order Streptosporangiales 0.001297 1 0 86 1.36 9.969e-07 2004 family Streptosporangiaceae 0.001297 1 0 10 1 9.902e-07 2000 genus Streptosporangium 0.001297 1 1 10 1 1.616e-05 35764 species Streptosporangium nondiastaticum 0.001297 1 0 116 1.2 5.458e-07 85010 order Pseudonocardiales 0.001297 1 0 116 1.2 5.515e-07 2070 family Pseudonocardiaceae 0.001297 1 0 73 1.18 1.096e-06 1813 genus Amycolatopsis 0.001297 1 0 40 1.2 2.815e-06 2618356 no rank unclassified Amycolatopsis 0.001297 1 1 40 1.2 2.815e-06 37632 species Amycolatopsis sp. 0.8378 646 22 18724 1.14 0.000231 84998 class Coriobacteriia 0.8054 621 2 18232 1.12 0.0003443 84999 order Coriobacteriales 0.498 384 1 7823 1.16 0.0005664 1643824 family Atopobiaceae 0.4967 383 6 7756 1.16 0.0008109 133925 genus Olsenella 0.4876 376 376 7477 1.16 0.0105 133926 species Olsenella uli 0.001297 1 0 78 1.24 1.07e-05 2638792 no rank unclassified Olsenella 0.001297 1 1 78 1.24 1.103e-05 2042683 species Olsenella sp. 0.3048 235 2 10146 1.09 0.0002664 84107 family Coriobacteriaceae 0.2957 228 143 9888 1.08 0.0005193 102106 genus Collinsella 0.1089 84 0 4780 1.15 0.0003234 2637548 no rank unclassified Collinsella 0.1089 84 84 4774 1.15 0.0003502 1965294 species Collinsella sp. 0.001297 1 1 249 1.02 0.0003102 74426 species Collinsella aerofaciens 0.005188 4 0 66 1.88 6.234e-05 1473205 genus Senegalimassilia 0.005188 4 4 65 1.89 0.0002068 2509433 species Senegalimassilia faecalis 0.001297 1 0 108 1.37 8.43e-06 331631 no rank environmental samples 0.001297 1 1 108 1.37 8.43e-06 331632 species uncultured Coriobacteriaceae bacterium 0.003891 3 0 137 1.51 6.378e-06 1643822 order Eggerthellales 0.003891 3 0 137 1.51 6.531e-06 1643826 family Eggerthellaceae 0.003891 3 0 116 1.48 4.094e-05 84108 genus Slackia 0.003891 3 0 115 1.48 0.0001258 2685017 no rank unclassified Slackia 0.003891 3 3 115 1.48 0.0001876 2049041 species Slackia sp. 2.14 1650 0 36181 1.19 0.000728 1297 phylum Deinococcus-Thermus 2.14 1650 0 36181 1.19 0.000728 188787 class Deinococci 2.139 1649 0 36118 1.19 0.00297 68933 order Thermales 2.139 1649 45 36118 1.19 0.00297 188786 family Thermaceae 2.076 1601 47 34295 1.18 0.0087 65551 genus Meiothermus 1.996 1539 1539 31059 1.19 0.08485 52022 species Meiothermus silvanus 0.01297 10 10 176 2.24 0.0003854 884155 species Meiothermus hypogaeus 0.003891 3 0 1421 1.15 0.001929 370471 no rank unclassified Meiothermus 0.003891 3 3 1421 1.15 0.001929 1955249 species Meiothermus sp. 0.002594 2 2 155 1.11 0.000442 2026184 species Meiothermus luteus 0.002594 2 0 52 2.13 8.897e-06 270 genus Thermus 0.002594 2 0 31 2.55 4.384e-05 2619321 no rank unclassified Thermus 0.002594 2 2 31 2.55 4.389e-05 275 species Thermus sp. 0.001297 1 0 135 1.13 0.0001074 2747271 genus Calidithermus 0.001297 1 1 135 1.13 0.0002953 1644118 species Calidithermus roseus 0.001297 1 0 45 1.04 1.454e-06 118964 order Deinococcales 0.001297 1 0 45 1.04 1.518e-06 183710 family Deinococcaceae 0.001297 1 0 45 1.04 1.539e-06 1298 genus Deinococcus 0.001297 1 1 15 1 4.54e-05 1299 species Deinococcus radiodurans 0.001297 1 0 135 1.2 2.574e-06 544448 phylum Tenericutes 0.001297 1 0 105 1.19 1.774e-05 658142 no rank environmental samples 0.001297 1 1 105 1.19 1.774e-05 658143 species uncultured Tenericutes bacterium 0.001297 1 0 62 1.1 1.658e-07 1798711 clade Cyanobacteria/Melainabacteria group 0.001297 1 0 44 1.11 1.26e-07 1117 phylum Cyanobacteria 0.001297 1 0 26 1 2.912e-07 1161 order Nostocales 0.001297 1 0 22 1 7.247e-07 1162 family Nostocaceae 0.001297 1 0 21 1 1.096e-06 1177 genus Nostoc 0.001297 1 0 21 1 2.211e-06 2593658 no rank unclassified Nostoc 0.001297 1 1 21 1 2.211e-06 1180 species Nostoc sp. 27.84 21467 203 474420 1.22 7.187e-05 1224 phylum Proteobacteria 20.89 16110 163 355801 1.23 0.000158 1236 class Gammaproteobacteria 16.35 12605 251 291935 1.24 0.0009731 91347 order Enterobacterales 15.99 12333 874 277473 1.23 0.002339 543 family Enterobacteriaceae 11.42 8807 5225 181744 1.28 0.02882 561 genus Escherichia 3.332 2569 2569 56355 1.28 0.04647 562 species Escherichia coli 1.207 931 0 42474 1.29 0.01777 2608889 no rank unclassified Escherichia 1.207 931 931 42474 1.29 0.01777 1884818 species Escherichia sp. 0.06484 50 50 1421 1.21 0.004025 564 species Escherichia fergusonii 0.02983 23 23 2737 1.27 0.00324 208962 species Escherichia albertii 0.01038 8 8 479 1.21 0.001072 1499973 species Escherichia marmotae 0.001297 1 1 13 1.62 2.811e-05 2562891 species Escherichia alba 3.24 2498 107 50107 1.15 0.01863 590 genus Salmonella 3.024 2332 2331 44253 1.15 0.02076 28901 species Salmonella enterica 0.001297 1 1 273 2.46 0.242 59201 subspecies Salmonella enterica subsp. enterica 0.07652 59 59 1747 1.1 0.003463 54736 species Salmonella bongori 0.07911 61 11 2338 1.22 0.0001665 544 genus Citrobacter 0.05058 39 18 1205 1.21 0.000168 1344959 species group Citrobacter freundii complex 0.01038 8 8 309 1.19 0.0002776 1639133 species Citrobacter portucalensis 0.009078 7 7 121 1.19 0.0001344 57706 species Citrobacter braakii 0.006484 5 5 244 1.23 0.0001124 546 species Citrobacter freundii 0.001297 1 1 55 1.36 0.0001072 67826 species Citrobacter sedlakii 0.005188 4 4 193 1.24 0.0003364 67825 species Citrobacter rodentium 0.005188 4 4 278 1.27 0.0001426 35703 species Citrobacter amalonaticus 0.002594 2 0 105 1.28 5.203e-05 2644389 no rank unclassified Citrobacter 0.002594 2 2 105 1.28 5.203e-05 1896336 species Citrobacter sp. 0.001297 1 1 17 1.06 4.576e-05 67824 species Citrobacter farmeri 0.03891 30 14 710 1.15 7.828e-05 570 genus Klebsiella 0.01038 8 8 136 1.12 8.981e-05 1134687 species Klebsiella michiganensis 0.007781 6 6 119 1.06 7.405e-05 571 species Klebsiella oxytoca 0.001297 1 1 25 1.08 5.366e-05 2153354 species Klebsiella huaxiensis 0.001297 1 1 112 1.11 0.0001078 1463165 species Klebsiella quasipneumoniae 0.03891 30 9 1475 1.19 7.42e-05 547 genus Enterobacter 0.01945 15 3 961 1.18 8.153e-05 354276 species group Enterobacter cloacae complex 0.009078 7 7 335 1.24 0.0006667 2494701 species Enterobacter chengduensis 0.002594 2 2 168 1.17 4.423e-05 550 species Enterobacter cloacae 0.001297 1 1 185 1.19 0.0001252 69218 species Enterobacter cancerogenus 0.001297 1 1 41 1.29 4.228e-05 61645 species Enterobacter asburiae 0.001297 1 1 28 1 2.688e-05 158836 species Enterobacter hormaechei 0.003891 3 0 142 1.25 4.006e-05 2608935 no rank unclassified Enterobacter 0.003891 3 3 101 1.25 4.041e-05 42895 species Enterobacter sp. 0.001297 1 1 14 1.5 2.625e-05 539813 species Enterobacter mori 0.001297 1 1 37 1.43 8.466e-05 2529381 species Enterobacter wuhouensis 0.001297 1 1 43 1.26 9.315e-05 1755099 species Enterobacter timonensis 0.006484 5 0 348 1.21 8.669e-05 579 genus Kluyvera 0.003891 3 3 118 1.18 0.0002296 73098 species Kluyvera georgiana 0.001297 1 1 61 1.13 5.761e-05 580 species Kluyvera cryocrescens 0.001297 1 1 49 1.31 5.154e-05 51288 species Kluyvera ascorbata 0.006484 5 0 100 1.19 2.854e-05 36866 no rank unclassified Enterobacteriaceae 0.006484 5 5 62 1.21 0.0001115 1849603 species Enterobacteriaceae bacterium 0.005188 4 1 156 1.19 0.0001299 1504576 genus Pseudocitrobacter 0.002594 2 2 31 1.06 8.344e-05 1398493 species Pseudocitrobacter faecalis 0.001297 1 0 115 1.2 0.0001538 2638778 no rank unclassified Pseudocitrobacter 0.001297 1 1 115 1.2 0.0001538 1903748 species Pseudocitrobacter sp. 0.003891 3 0 168 1.24 2.934e-05 82976 genus Buttiauxella 0.002594 2 2 28 1.18 5.97e-05 82993 species Buttiauxella warmboldiae 0.001297 1 0 31 1.26 2.039e-05 2634062 no rank unclassified Buttiauxella 0.001297 1 1 31 1.26 2.039e-05 1972222 species Buttiauxella sp. 0.002594 2 0 60 1.15 1.658e-05 83654 genus Leclercia 0.001297 1 1 20 1.1 1.151e-05 83655 species Leclercia adecarboxylata 0.001297 1 0 31 1.16 1.82e-05 2627398 no rank unclassified Leclercia 0.001297 1 1 31 1.16 1.82e-05 1898428 species Leclercia sp. 0.002594 2 0 169 1.15 5.013e-05 2726810 genus Scandinavium 0.002594 2 0 153 1.16 5.239e-05 2830652 no rank unclassified Scandinavium 0.002594 2 2 153 1.16 5.239e-05 2830653 species Scandinavium sp. 0.002594 2 0 39 1.21 8.311e-05 2055876 genus Metakosakonia 0.002594 2 2 39 1.21 8.311e-05 1485952 species Metakosakonia massiliensis 0.002594 2 0 143 1.28 2.6e-05 158483 genus Cedecea 0.002594 2 2 47 1.51 3.591e-05 158823 species Cedecea lapagei 0.002594 2 0 111 1.24 4.557e-05 1330545 genus Lelliottia 0.001297 1 0 40 1.25 4.652e-05 2642424 no rank unclassified Lelliottia 0.001297 1 1 40 1.25 4.652e-05 1898429 species Lelliottia sp. 0.001297 1 1 37 1.22 9.539e-05 1907578 species Lelliottia jeotgali 0.001297 1 0 77 1.23 3.31e-05 447792 genus Phytobacter 0.001297 1 1 16 1.12 2.377e-05 395631 species Phytobacter diazotrophicus 0.001297 1 0 37 1.14 5.99e-05 2303321 genus Superficieibacter 0.001297 1 1 37 1.14 5.99e-05 2022662 species Superficieibacter electus 0.001297 1 0 73 1.16 3.986e-05 2055880 genus Pseudescherichia 0.001297 1 1 28 1.07 6.291e-05 566 species Pseudescherichia vulneris 0.001297 1 0 97 1.16 4.094e-05 1903434 genus Atlantibacter 0.001297 1 1 37 1.08 3.975e-05 565 species Atlantibacter hermannii 0.001297 1 1 163 1.12 3.159e-05 160674 genus Raoultella 0.001297 1 0 150 1.2 2.309e-05 1330547 genus Kosakonia 0.001297 1 0 33 1.18 1.91e-05 2632876 no rank unclassified Kosakonia 0.001297 1 1 33 1.18 1.91e-05 1916651 species Kosakonia sp. 0.01038 8 0 170 1.39 4.364e-06 1903414 family Morganellaceae 0.006484 5 0 98 1.57 8.867e-06 626 genus Xenorhabdus 0.006484 5 5 82 1.65 0.0001653 290112 species Xenorhabdus szentirmaii 0.001297 1 0 18 1.22 2.007e-06 586 genus Providencia 0.001297 1 1 1 1 1.907e-06 333962 species Providencia heimbachae 0.001297 1 0 13 1.15 4.593e-06 581 genus Morganella 0.001297 1 1 9 1.22 4.857e-06 582 species Morganella morganii 0.001297 1 1 13 1 1.924e-06 29487 genus Photorhabdus 0.007781 6 2 560 1.21 1.029e-05 1903409 family Erwiniaceae 0.002594 2 0 306 1.2 1.108e-05 53335 genus Pantoea 0.001297 1 1 23 1.09 2.228e-05 553 species Pantoea ananatis 0.001297 1 0 90 1.27 9.659e-06 2630326 no rank unclassified Pantoea 0.001297 1 1 5 1.2 1.094e-05 1925589 species Pantoea sp. 1.19 0.001297 1 0 109 1.14 7.28e-06 551 genus Erwinia 0.001297 1 0 37 1.19 7.956e-06 2622719 no rank unclassified Erwinia 0.001297 1 1 37 1.19 7.956e-06 558 species Erwinia sp. 0.001297 1 0 72 1.32 3.174e-05 2100764 genus Mixta 0.001297 1 1 61 1.34 0.0001195 1458355 species Mixta theicola 0.003891 3 1 460 1.26 9.454e-06 1903411 family Yersiniaceae 0.002594 2 0 187 1.18 1.051e-05 613 genus Serratia 0.002594 2 2 61 1.11 2.171e-05 615 species Serratia marcescens 0.002594 2 0 112 1.31 1.755e-05 1903412 family Hafniaceae 0.002594 2 0 58 1.41 2.018e-05 568 genus Hafnia 0.001297 1 1 41 1.24 3.066e-05 569 species Hafnia alvei 0.001297 1 1 17 1.82 1.644e-05 546367 species Hafnia paralvei 0.002594 2 0 155 1.33 7.399e-06 1903410 family Pectobacteriaceae 0.001297 1 0 26 1.15 8.029e-06 71655 genus Brenneria 0.001297 1 1 1 1 2.269e-06 1509241 species Brenneria roseae 0.001297 1 0 35 1.4 6.244e-06 204037 genus Dickeya 0.001297 1 1 3 1 8.967e-06 204038 species Dickeya dadantii 3.406 2626 3 40544 1.09 8.206e-05 72274 order Pseudomonadales 3.356 2588 14 39841 1.09 9.927e-05 135621 family Pseudomonadaceae 3.337 2573 754 39015 1.09 9.855e-05 286 genus Pseudomonas 1.923 1483 77 18905 1.09 0.001428 136841 species group Pseudomonas aeruginosa group 1.807 1393 1393 17858 1.08 0.02315 287 species Pseudomonas aeruginosa 0.005188 4 4 76 1.08 4.733e-05 300 species Pseudomonas mendocina 0.003891 3 0 225 1.09 0.0001069 627141 species subgroup Pseudomonas nitroreducens/multiresinivorans group 0.003891 3 3 225 1.09 0.0001069 46680 species Pseudomonas nitroreducens 0.003891 3 3 28 1 1.749e-05 53412 species Pseudomonas resinovorans 0.002594 2 0 29 1.07 2.149e-05 1232139 species subgroup Pseudomonas oleovorans/pseudoalcaligenes group 0.002594 2 2 23 1.04 2.808e-05 301 species Pseudomonas oleovorans 0.001297 1 1 72 1.03 7.427e-05 53408 species Pseudomonas citronellolis 0.2931 226 4 5188 1.08 0.0003704 136846 species group Pseudomonas stutzeri group 0.2879 222 1 5120 1.08 0.0004451 578833 species subgroup Pseudomonas stutzeri subgroup 0.2866 221 221 5071 1.08 0.000448 316 species Pseudomonas stutzeri 0.07911 61 0 1815 1.1 1.222e-05 196821 no rank unclassified Pseudomonas 0.07522 58 58 1717 1.09 1.16e-05 306 species Pseudomonas sp. 0.003891 3 3 87 1.11 0.0001635 2593654 species Pseudomonas sp. DMKU_BBB3-04 0.005188 4 4 13 1.08 2.6e-05 2211392 species Pseudomonas kirkiae 0.005188 4 1 174 1.1 8.431e-06 136845 species group Pseudomonas putida group 0.001297 1 1 7 1 1.48e-05 70775 species Pseudomonas plecoglossicida 0.001297 1 1 23 1.3 1.242e-05 47880 species Pseudomonas fulva 0.001297 1 1 61 1.03 5.633e-06 303 species Pseudomonas putida 0.005188 4 0 85 1.06 1.527e-05 136842 species group Pseudomonas chlororaphis group 0.005188 4 4 82 1.06 2.568e-05 587753 species Pseudomonas chlororaphis 0.003891 3 3 296 1.1 0.0004146 366289 species Pseudomonas delhiensis 0.003891 3 0 135 1.03 3.2e-06 136843 species group Pseudomonas fluorescens group 0.001297 1 1 4 1 8.196e-06 78544 species Pseudomonas gessardii 0.001297 1 1 46 1.02 2.208e-06 294 species Pseudomonas fluorescens 0.001297 1 1 4 1 4.669e-06 219574 species Pseudomonas proteolytica 0.002594 2 2 15 1 2.582e-05 915472 species Pseudomonas nitritireducens 0.002594 2 2 11 1.27 1.754e-05 574962 species Pseudomonas taeanensis 0.002594 2 2 19 1 3.962e-05 556533 species Pseudomonas benzenivorans 0.002594 2 2 37 1.03 7.207e-05 428992 species Pseudomonas panipatensis 0.002594 2 2 10 1.1 3.082e-05 157784 species Pseudomonas thermotolerans 0.002594 2 2 20 1.05 3.157e-05 1387231 species Pseudomonas aestus 0.002594 2 0 55 1.13 3.308e-06 136849 species group Pseudomonas syringae group 0.002594 2 2 23 1.13 1.816e-05 50340 species Pseudomonas fuscovaginae 0.001297 1 1 23 1.26 5.435e-05 706570 species Pseudomonas flexibilis 0.001297 1 1 19 1.11 2.098e-05 658457 species Pseudomonas composti 0.001297 1 1 17 1.06 1.825e-05 291995 species Pseudomonas azotifigens 0.001297 1 1 13 1.08 2.864e-05 289003 species Pseudomonas borbori 0.001297 1 1 9 1 1.545e-05 254161 species Pseudomonas pachastrellae 0.001297 1 1 85 1.04 8.841e-05 2502979 species Pseudomonas khazarica 0.001297 1 1 52 1.13 8.855e-05 2487520 species Pseudomonas dryadis 0.001297 1 1 27 1.33 5.042e-05 2482751 species Pseudomonas nitrititolerans 0.001297 1 1 2 1 3.398e-06 2293833 species Pseudomonas nabeulensis 0.001297 1 1 12 1 1.712e-05 2219225 species Pseudomonas asiatica 0.001297 1 1 4 1 6.635e-06 2056231 species Pseudomonas qingdaonensis 0.001297 1 1 3 1 5.215e-06 1880678 species Pseudomonas sivasensis 0.001297 1 1 7 1 1.803e-05 157792 species Pseudomonas xiamenensis 0.001297 1 1 15 1 1.338e-05 1495066 species Pseudomonas capeferrum 0.001297 1 1 11 1.09 4.359e-06 117681 species Pseudomonas gingeri 0.001297 1 1 485 1.13 0.001239 1176259 species Pseudomonas songnenensis 0.001297 1 1 11 1 3.34e-06 104087 species Pseudomonas frederiksbergensis 0.001297 1 0 38 1.03 1.368e-05 351 subfamily Azotobacter group 0.001297 1 0 37 1.03 2.065e-05 352 genus Azotobacter 0.001297 1 1 9 1 1.931e-05 354 species Azotobacter vinelandii 0.04539 35 0 628 1.14 7.152e-06 468 family Moraxellaceae 0.04409 34 18 599 1.06 1.031e-05 469 genus Acinetobacter 0.01945 15 10 200 1.07 4.695e-05 909768 species group Acinetobacter calcoaceticus/baumannii complex 0.002594 2 2 31 1.1 3.602e-05 48296 species Acinetobacter pittii 0.001297 1 1 57 1.04 7.585e-05 1785128 species Acinetobacter lactucae 0.001297 1 1 5 1.6 1.131e-05 1530123 species Acinetobacter seifertii 0.001297 1 1 35 1.06 6.785e-05 106654 species Acinetobacter nosocomialis 0.001297 1 0 61 1.05 2.545e-06 196816 no rank unclassified Acinetobacter 0.001297 1 1 61 1.05 2.545e-06 472 species Acinetobacter sp. 0.001297 1 0 17 3.59 2.688e-06 475 genus Moraxella 0.001297 1 0 17 3.59 4.188e-05 2685852 no rank unclassified Moraxella 0.001297 1 1 17 3.59 4.188e-05 479 species Moraxella sp. 0.8975 692 1 15460 1.12 8.188e-05 135614 order Xanthomonadales 0.8767 676 5 14783 1.12 0.0002553 1775411 family Rhodanobacteraceae 0.8689 670 0 14383 1.12 0.007087 70411 genus Frateuria 0.8689 670 670 14311 1.12 0.03706 81475 species Frateuria aurantia 0.001297 1 0 7 1 5.717e-06 1649642 genus Oleiagrimonas 0.001297 1 0 5 1 1.052e-05 2638796 no rank unclassified Oleiagrimonas 0.001297 1 1 5 1 1.052e-05 2010330 species Oleiagrimonas sp. 0.01945 15 2 486 1.09 3.891e-06 32033 family Xanthomonadaceae 0.01038 8 6 235 1.11 1.69e-05 83614 genus Luteimonas 0.002594 2 0 24 1.29 2.785e-06 2629088 no rank unclassified Luteimonas 0.002594 2 2 24 1.29 2.785e-06 1873125 species Luteimonas sp. 0.005188 4 0 80 1.07 3.368e-06 68 genus Lysobacter 0.003891 3 0 67 1.09 5.483e-06 2635362 no rank unclassified Lysobacter 0.003891 3 3 67 1.09 5.652e-06 72226 species Lysobacter sp. 0.001297 1 1 2 1 2.005e-06 69 species Lysobacter enzymogenes 0.001297 1 1 26 1.23 1.022e-06 338 genus Xanthomonas 0.01038 8 0 412 1.3 1.596e-06 135622 order Alteromonadales 0.007781 6 0 289 1.31 3.098e-06 72275 family Alteromonadaceae 0.007781 6 0 263 1.32 7.025e-06 2742 genus Marinobacter 0.003891 3 0 245 1.34 1.749e-05 83889 no rank unclassified Marinobacter 0.003891 3 3 245 1.34 1.749e-05 50741 species Marinobacter sp. 0.001297 1 1 2 1 4.779e-06 650891 species Marinobacter daqiaonensis 0.001297 1 1 1 1 2.213e-06 236100 species Marinobacter algicola 0.001297 1 1 3 1 7.334e-06 1562308 species Marinobacter piscensis 0.002594 2 0 42 1.02 8.53e-07 267888 family Pseudoalteromonadaceae 0.002594 2 0 41 1.02 8.628e-07 53246 genus Pseudoalteromonas 0.002594 2 2 24 1 1.483e-05 161398 species Pseudoalteromonas phenolica 0.006484 5 0 440 1.24 2.368e-06 135619 order Oceanospirillales 0.003891 3 0 158 1.28 2.791e-06 135620 family Oceanospirillaceae 0.002594 2 0 120 1.28 4.051e-05 965 genus Oceanospirillum 0.002594 2 2 117 1.29 0.0002466 966 species Oceanospirillum linum 0.001297 1 0 14 1 1.471e-06 48075 genus Marinobacterium 0.001297 1 0 10 1 3.154e-06 2644139 no rank unclassified Marinobacterium 0.001297 1 1 10 1 3.154e-06 1902815 species Marinobacterium sp. 0.001297 1 0 189 1.17 2.398e-06 28256 family Halomonadaceae 0.001297 1 0 109 1.19 2.948e-05 504090 genus Kushneria 0.001297 1 1 102 1.21 0.0002223 2100822 species Kushneria phyllosphaerae 0.001297 1 0 42 1.4 4.994e-06 2066474 family Endozoicomonadaceae 0.001297 1 0 23 1.7 3.287e-05 2066475 genus Parendozoicomonas 0.001297 1 1 23 1.7 3.287e-05 1960125 species Parendozoicomonas haliclonae 0.003891 3 0 119 1.22 8.298e-07 135623 order Vibrionales 0.003891 3 0 119 1.22 8.298e-07 641 family Vibrionaceae 0.003891 3 0 77 1.13 7.754e-07 662 genus Vibrio 0.002594 2 0 39 1.08 7.474e-06 1891919 species group Vibrio oreintalis group 0.002594 2 2 19 1.16 3.47e-05 170652 species Vibrio brasiliensis 0.001297 1 0 8 1.5 4.03e-07 2614977 no rank unclassified Vibrio 0.001297 1 1 8 1.5 4.03e-07 678 species Vibrio sp. 0.002594 2 0 65 1.12 1.996e-06 135625 order Pasteurellales 0.002594 2 0 65 1.12 2.052e-06 712 family Pasteurellaceae 0.002594 2 0 33 1.03 5.671e-06 724 genus Haemophilus 0.002594 2 2 28 1 0.0001121 1078480 species Haemophilus sputorum 0.002594 2 0 191 1.29 1.863e-06 135613 order Chromatiales 0.002594 2 0 152 1.32 3.619e-06 1046 family Chromatiaceae 0.001297 1 0 17 1 6.88e-06 53452 genus Lamprocystis 0.001297 1 1 17 1 2.333e-05 61598 species Lamprocystis purpurea 0.001297 1 0 115 1.41 2.601e-05 2071980 genus Pararheinheimera 0.001297 1 0 114 1.41 3.225e-05 2640263 no rank unclassified Pararheinheimera 0.001297 1 1 114 1.41 3.225e-05 2071981 species Pararheinheimera sp. 0.001297 1 0 17 1.24 2.854e-06 742030 order Salinisphaerales 0.001297 1 0 17 1.24 2.854e-06 742031 family Salinisphaeraceae 0.001297 1 0 17 1.24 3.393e-06 180541 genus Salinisphaera 0.001297 1 0 4 2 1.576e-06 2649847 no rank unclassified Salinisphaera 0.001297 1 1 4 2 1.576e-06 1914330 species Salinisphaera sp. 0.001297 1 0 2 1 2.318e-07 1240482 order Orbales 0.001297 1 0 2 1 2.318e-07 1240483 family Orbaceae 0.001297 1 0 2 1 2.787e-07 1193503 genus Gilliamella 0.001297 1 1 2 1 4.32e-07 1196095 species Gilliamella apicola 0.001297 1 0 85 1.09 1.925e-06 118969 order Legionellales 0.001297 1 0 82 1.1 2.495e-06 444 family Legionellaceae 0.001297 1 0 82 1.1 2.836e-06 445 genus Legionella 0.001297 1 1 81 1.09 0.0001885 70611 species Legionella taurinensis 0.001297 1 0 30 1.2 5.11e-07 118884 no rank Gammaproteobacteria incertae sedis 0.001297 1 0 8 1.25 9.168e-07 1400857 family Candidatus Competibacteraceae 0.001297 1 0 5 1.2 1.082e-06 1951614 no rank unclassified Candidatus Competibacteraceae 0.001297 1 1 3 1.33 9.436e-07 2053538 species Candidatus Competibacteraceae bacterium 6.567 5064 59 103762 1.17 4.465e-05 28211 class Alphaproteobacteria 4.391 3386 69 62759 1.16 0.0001465 204455 order Rhodobacterales 4.293 3310 147 59014 1.16 0.0002507 31989 family Rhodobacteraceae 4.026 3104 452 53899 1.15 0.01619 1653176 genus Cereibacter 2.726 2102 2102 33499 1.17 0.03351 1063 species Cereibacter sphaeroides 0.69 532 532 17237 1.12 0.03307 445629 species Cereibacter johrii 0.01427 11 11 308 1.1 0.0007257 43057 species Cereibacter azotoformans 0.006484 5 0 74 1.16 0.0001729 2705418 no rank unclassified Cereibacter 0.006484 5 5 74 1.16 0.0001729 2705419 species Cereibacter sp. 0.002594 2 2 46 1.09 0.0001267 439529 species Cereibacter ovatus 0.02983 23 0 413 1.06 0.0003403 2055850 genus Aquicoccus 0.02983 23 23 408 1.06 0.0008385 1852029 species Aquicoccus porphyridii 0.01297 10 0 235 1.15 7.256e-06 265 genus Paracoccus 0.007781 6 0 66 1.11 7.692e-06 246570 no rank unclassified Paracoccus 0.007781 6 6 66 1.11 7.692e-06 267 species Paracoccus sp. 0.003891 3 3 19 1.21 4.649e-05 2023261 species Paracoccus hibiscisoli 0.001297 1 1 7 1.86 1.983e-05 690417 species Paracoccus sphaerophysae 0.005188 4 0 64 1.25 8.799e-06 1060 genus Rhodobacter 0.002594 2 0 26 1.23 8.82e-06 196779 no rank unclassified Rhodobacter 0.002594 2 2 8 1.5 4.768e-06 1062 species Rhodobacter sp. 0.002594 2 2 10 1.4 1.05e-05 1061 species Rhodobacter capsulatus 0.003891 3 0 10 1.3 1.628e-05 1817584 genus Maliponia 0.003891 3 3 10 1.3 1.628e-05 1673631 species Maliponia aquimaris 0.003891 3 0 66 1.14 9.177e-06 1443919 genus Tabrizicola 0.003891 3 0 61 1.15 9.705e-06 2620214 no rank unclassified Tabrizicola 0.003891 3 3 22 1 4.072e-05 2305252 species Tabrizicola sp. DJC 0.002594 2 0 100 1.15 3.023e-06 58840 no rank unclassified Rhodobacteraceae 0.001297 1 1 6 1 1.339e-05 2710650 species Rhodobacteraceae bacterium KMS-5 0.001297 1 1 46 1.13 2.161e-06 1904441 species Rhodobacteraceae bacterium 0.002594 2 0 38 1.05 2.319e-05 2663134 genus Pseudogemmobacter 0.002594 2 2 32 1 5.887e-05 2250708 species Pseudogemmobacter bohemicus 0.002594 2 0 12 1 3.403e-06 238783 genus Pseudorhodobacter 0.002594 2 0 12 1 6.809e-06 2644082 no rank unclassified Pseudorhodobacter 0.002594 2 2 8 1 6.11e-06 1934400 species Pseudorhodobacter sp. 0.002594 2 0 109 1.06 1.077e-05 204456 genus Gemmobacter 0.001297 1 1 5 1.6 1.345e-05 2595004 species Gemmobacter caeruleus 0.001297 1 1 5 1 1.228e-05 2306023 species Gemmobacter lutimaris 0.001297 1 0 147 1.24 0.000274 2873978 genus Phycocomes 0.001297 1 1 147 1.24 0.000274 2056810 species Phycocomes zhengii 0.001297 1 0 26 1.12 1.125e-05 2211638 genus Limimaricola 0.001297 1 1 10 1.3 2.214e-05 1343159 species Limimaricola soesokkakensis 0.001297 1 0 25 1.12 8.33e-06 205889 genus Albidovulum 0.001297 1 0 24 1.12 9.071e-06 2623499 no rank unclassified Albidovulum 0.001297 1 1 24 1.12 1.239e-05 1872424 species Albidovulum sp. 0.001297 1 0 10 1.1 1.3e-05 2047740 genus Rhodosalinus 0.001297 1 0 7 1.14 1.539e-05 2630183 no rank unclassified Rhodosalinus 0.001297 1 1 7 1.14 1.539e-05 2259333 species Rhodosalinus sp. E84 0.001297 1 0 16 1.12 1.293e-05 1775705 genus Frigidibacter 0.001297 1 0 7 1 9.351e-06 2641805 no rank unclassified Frigidibacter 0.001297 1 1 7 1 9.351e-06 2586418 species Frigidibacter sp. 0.001297 1 0 13 1.31 3.481e-06 1541822 genus Pseudophaeobacter 0.001297 1 0 13 1.31 4.93e-06 2637024 no rank unclassified Pseudophaeobacter 0.001297 1 1 13 1.31 4.93e-06 1971739 species Pseudophaeobacter sp. 0.001297 1 0 5 1 1.257e-05 1470577 genus Paenirhodobacter 0.001297 1 1 5 1 1.257e-05 1105367 species Paenirhodobacter enshiensis 0.001297 1 0 52 1.19 5.836e-06 121820 genus Roseinatronobacter 0.001297 1 1 20 1 2.438e-05 393481 species Roseinatronobacter monicus 0.009078 7 1 432 1.12 2.374e-06 2854170 family Roseobacteraceae 0.002594 2 0 50 1.04 8.539e-06 263377 genus Salipiger 0.001297 1 1 9 1 1.665e-05 555512 species Salipiger marinus 0.001297 1 0 17 1.06 1.537e-05 2640570 no rank unclassified Salipiger 0.001297 1 1 17 1.06 1.537e-05 2078585 species Salipiger sp. 0.001297 1 0 2 1 5.159e-07 947567 genus Litoreibacter 0.001297 1 1 1 1 2.598e-06 491388 species Litoreibacter arenae 0.001297 1 0 1 1 1.59e-06 92944 genus Ketogulonicigenium 0.001297 1 1 1 1 2.92e-06 92945 species Ketogulonicigenium vulgare 0.001297 1 0 19 1.16 6.823e-06 599652 genus Tropicimonas 0.001297 1 1 3 1 4.883e-06 1031541 species Tropicimonas sediminicola 0.001297 1 0 17 1.12 6.26e-06 295418 genus Rubellimicrobium 0.001297 1 1 5 1 9.754e-06 1123067 species Rubellimicrobium mesophilum 2.047 1578 0 35218 1.15 0.00153 2800060 order Hyphomonadales 2.047 1578 1 35218 1.15 0.00153 69657 family Hyphomonadaceae 2.045 1577 2 35131 1.15 0.02885 2723 genus Hirschia 2.043 1575 1575 34965 1.15 0.08919 2724 species Hirschia baltica 0.02334 18 0 1359 1.2 1.532e-06 356 order Hyphomicrobiales 0.007781 6 0 231 1.38 1.714e-06 69277 family Phyllobacteriaceae 0.006484 5 0 190 1.38 2.192e-06 68287 genus Mesorhizobium 0.003891 3 0 123 1.26 2.435e-06 325217 no rank unclassified Mesorhizobium 0.002594 2 2 106 1.25 2.218e-06 1871066 species Mesorhizobium sp. 0.001297 1 1 16 1.31 2.479e-05 1827501 species Mesorhizobium sp. YM1C-6-2 0.002594 2 2 17 2.76 3.478e-05 1777867 species Mesorhizobium jarvisii 0.001297 1 0 4 1.5 7.479e-07 274591 genus Hoeflea 0.001297 1 1 2 2 4.615e-06 714899 species Hoeflea halophila 0.006484 5 0 397 1.18 1.839e-06 82115 family Rhizobiaceae 0.005188 4 0 328 1.18 1.888e-06 227290 no rank Rhizobium/Agrobacterium group 0.002594 2 0 5 1.2 3.356e-06 1903858 genus Pseudorhizobium 0.002594 2 2 5 1.2 1.093e-05 1335061 species Pseudorhizobium flavum 0.002594 2 0 89 1.13 4.9e-06 1525371 genus Neorhizobium 0.002594 2 2 42 1.14 6.461e-05 67774 species Neorhizobium huautlense 0.001297 1 0 12 1.08 1.875e-06 323620 genus Shinella 0.001297 1 0 9 1.11 2.573e-06 2643062 no rank unclassified Shinella 0.001297 1 1 9 1.11 2.573e-06 1870904 species Shinella sp. 0.005188 4 0 359 1.17 1.147e-05 2821832 family Stappiaceae 0.003891 3 0 326 1.12 3.114e-05 150830 genus Roseibium 0.003891 3 0 326 1.12 3.99e-05 2629323 no rank unclassified Roseibium 0.003891 3 3 326 1.12 3.99e-05 1936156 species Roseibium sp. 0.001297 1 0 18 1.39 3.95e-05 500577 genus Nesiotobacter 0.001297 1 1 18 1.39 3.95e-05 197461 species Nesiotobacter exalbescens 0.001297 1 0 13 1.15 4.271e-07 41292 no rank unclassified Hyphomicrobiales 0.001297 1 1 9 1 4.287e-07 1909294 species Hyphomicrobiales bacterium 0.001297 1 0 6 1 4.373e-07 2844375 family Reyranellaceae 0.001297 1 0 6 1 4.373e-07 445219 genus Reyranella 0.001297 1 0 6 1 5.047e-07 2630009 no rank unclassified Reyranella 0.001297 1 1 6 1 5.571e-07 1929291 species Reyranella sp. 0.001297 1 0 12 1 4.484e-07 2831100 family Boseaceae 0.001297 1 0 12 1 4.484e-07 85413 genus Bosea 0.001297 1 0 4 1 1.862e-07 2653178 no rank unclassified Bosea 0.001297 1 1 4 1 1.902e-07 1871050 species Bosea sp. 0.01297 10 0 330 1.07 1.165e-06 204441 order Rhodospirillales 0.01167 9 0 255 1.02 2.421e-06 433 family Acetobacteraceae 0.01167 9 0 207 1.01 1.009e-05 125216 genus Roseomonas 0.01167 9 9 199 1.02 0.0003718 1335062 species Roseomonas rhizosphaerae 0.001297 1 0 9 1.89 2.745e-06 2813951 family Terasakiellaceae 0.001297 1 0 9 1.89 2.745e-06 196080 genus Terasakiella 0.001297 1 1 8 2 8.711e-06 1867952 species Candidatus Terasakiella magnetica 0.009078 7 0 351 1.37 1.131e-06 204457 order Sphingomonadales 0.006484 5 0 261 1.39 1.104e-06 41297 family Sphingomonadaceae 0.005188 4 0 169 1.52 3.53e-06 165696 genus Novosphingobium 0.002594 2 2 13 4.77 1.333e-05 1778672 species Novosphingobium flavum 0.001297 1 0 114 1.18 3.998e-06 2644732 no rank unclassified Novosphingobium 0.001297 1 1 114 1.18 3.998e-06 1874826 species Novosphingobium sp. 0.001297 1 1 36 1.5 5.941e-05 1348853 species Novosphingobium malaysiense 0.001297 1 0 49 1.27 1.502e-06 165695 genus Sphingobium 0.001297 1 0 44 1.25 2.723e-06 2611147 no rank unclassified Sphingobium 0.001297 1 1 44 1.25 2.723e-06 1912891 species Sphingobium sp. 0.002594 2 0 74 1.3 9.218e-05 2844881 family Zymomonadaceae 0.002594 2 0 74 1.3 9.218e-05 541 genus Zymomonas 0.002594 2 2 74 1.3 9.218e-05 542 species Zymomonas mobilis 0.007781 6 0 225 1.25 2.726e-06 204458 order Caulobacterales 0.007781 6 1 224 1.25 2.853e-06 76892 family Caulobacteraceae 0.003891 3 0 64 1 2.756e-06 41275 genus Brevundimonas 0.003891 3 0 64 1 5.086e-06 2622653 no rank unclassified Brevundimonas 0.003891 3 3 64 1 5.086e-06 1871086 species Brevundimonas sp. 0.001297 1 0 147 1.37 5.861e-06 75 genus Caulobacter 0.001297 1 0 145 1.38 8.543e-06 2648921 no rank unclassified Caulobacter 0.001297 1 1 144 1.38 9.484e-06 78 species Caulobacter sp. 0.001297 1 0 7 1.14 4.307e-07 20 genus Phenylobacterium 0.001297 1 1 1 1 1.17e-06 284016 species Phenylobacterium zucineum 0.0817 63 0 3142 1.16 2.681e-06 28216 class Betaproteobacteria 0.03372 26 1 1427 1.21 1.621e-06 80840 order Burkholderiales 0.01167 9 0 305 1.1 1.236e-06 80864 family Comamonadaceae 0.01038 8 0 159 1.08 1.154e-05 174951 genus Ramlibacter 0.01038 8 0 157 1.07 1.472e-05 2617605 no rank unclassified Ramlibacter 0.01038 8 8 157 1.07 1.472e-05 1917967 species Ramlibacter sp. 0.001297 1 0 23 1.17 5.814e-07 34072 genus Variovorax 0.001297 1 0 14 1 4.72e-07 663243 no rank unclassified Variovorax 0.001297 1 1 14 1 4.72e-07 1871043 species Variovorax sp. 0.01038 8 0 647 1.26 2.249e-06 119060 family Burkholderiaceae 0.009078 7 0 402 1.29 1.33e-05 1827195 genus Caballeronia 0.006484 5 5 382 1.29 0.00036 2010198 species Caballeronia mineralivorans 0.001297 1 0 2 1 4.481e-07 2646786 no rank unclassified Caballeronia 0.001297 1 1 2 1 4.481e-07 1931223 species Caballeronia sp. 0.001297 1 1 12 1.33 3.93e-06 196367 species Caballeronia sordidicola 0.001297 1 0 104 1.38 1.022e-06 1822464 genus Paraburkholderia 0.001297 1 1 55 1.58 6.676e-05 487049 species Paraburkholderia rhynchosiae 0.003891 3 3 35 1.34 4.741e-07 224471 no rank Burkholderiales genera incertae sedis 0.002594 2 0 158 1.19 1.353e-05 995019 family Sutterellaceae 0.002594 2 0 153 1.19 5.126e-05 1980697 genus Duodenibacillus 0.002594 2 0 153 1.19 5.569e-05 2645598 no rank unclassified Duodenibacillus 0.002594 2 2 153 1.19 5.569e-05 1980700 species Duodenibacillus sp. 0.002594 2 1 161 1.32 1.744e-06 506 family Alcaligenaceae 0.001297 1 0 20 1.1 6.992e-07 222 genus Achromobacter 0.001297 1 1 2 1.5 8.725e-07 85698 species Achromobacter xylosoxidans 0.001297 1 0 68 1.13 4.794e-07 75682 family Oxalobacteraceae 0.001297 1 0 9 1.11 7.21e-07 963 genus Herbaspirillum 0.001297 1 1 2 1 3.437e-06 2014887 species Herbaspirillum robiniae 0.02853 22 1 828 1.01 1.448e-05 206351 order Neisseriales 0.02723 21 0 764 1 3.067e-05 481 family Neisseriaceae 0.02723 21 19 708 1 6.239e-05 482 genus Neisseria 0.001297 1 1 129 1 0.0006191 487 species Neisseria meningitidis 0.001297 1 1 59 1 0.0003699 1906581 species Neisseria bergeri 0.01427 11 0 547 1.32 8.698e-06 206389 order Rhodocyclales 0.007781 6 0 274 1.25 1.061e-05 75787 family Rhodocyclaceae 0.006484 5 0 262 1.25 3.225e-05 551759 genus Aromatoleum 0.003891 3 3 66 1.23 0.0001095 59406 species Aromatoleum evansii 0.001297 1 1 59 1.41 0.0001547 200254 species Aromatoleum buckelii 0.001297 1 1 83 1.07 0.0002423 182180 species Aromatoleum anaerobium 0.001297 1 0 1 2 6.28e-07 1769726 genus Niveibacterium 0.001297 1 0 1 2 1.003e-06 2648924 no rank unclassified Niveibacterium 0.001297 1 1 1 2 1.003e-06 2017444 species Niveibacterium sp. 0.003891 3 0 88 1.35 4.277e-06 2008794 family Zoogloeaceae 0.001297 1 0 10 1 2.586e-06 349 genus Zoogloea 0.001297 1 1 4 1 7.446e-06 350 species Zoogloea ramigera 0.001297 1 0 16 1.25 1.72e-06 33057 genus Thauera 0.001297 1 0 11 1.27 2.366e-06 2609274 no rank unclassified Thauera 0.001297 1 1 11 1.27 2.366e-06 1905334 species Thauera sp. 0.001297 1 0 60 1.43 1.119e-05 12960 genus Azoarcus 0.001297 1 0 16 1.44 8.913e-06 2629479 no rank unclassified Azoarcus 0.001297 1 1 16 1.44 8.913e-06 29544 species Azoarcus sp. 0.002594 2 0 181 1.4 1.156e-05 2008795 family Azonexaceae 0.002594 2 0 178 1.4 1.425e-05 146936 genus Azonexus 0.002594 2 0 177 1.41 1.556e-05 2649329 no rank unclassified Azonexus 0.002594 2 2 177 1.41 1.556e-05 1872668 species Azonexus sp. 0.003891 3 0 220 1.11 2.42e-06 32003 order Nitrosomonadales 0.003891 3 0 201 1.11 9.112e-06 32011 family Methylophilaceae 0.003891 3 0 196 1.12 9.74e-05 404 genus Methylobacillus 0.003891 3 0 194 1.12 0.0005272 2647660 no rank unclassified Methylobacillus 0.003891 3 3 194 1.12 0.0005272 1848039 species Methylobacillus sp. MM3 0.001297 1 0 13 1.46 2.666e-07 33809 no rank unclassified Betaproteobacteria 0.001297 1 1 10 1.5 3.031e-07 1891241 species Betaproteobacteria bacterium 0.03502 27 0 999 1.15 1.468e-06 68525 subphylum delta/epsilon subdivisions 0.02464 19 0 466 1.03 5.019e-06 29547 class Epsilonproteobacteria 0.02464 19 0 466 1.03 5.432e-06 213849 order Campylobacterales 0.02464 19 0 435 1.03 2.167e-05 72293 family Helicobacteraceae 0.02464 19 0 435 1.03 2.358e-05 209 genus Helicobacter 0.02464 19 19 399 1.03 0.0003217 210 species Helicobacter pylori 0.01038 8 0 533 1.26 9.068e-07 28221 class Deltaproteobacteria 0.009078 7 0 429 1.28 2.666e-06 29 order Myxococcales 0.009078 7 0 418 1.28 7.564e-06 80811 suborder Cystobacterineae 0.009078 7 0 411 1.28 1.26e-05 31 family Myxococcaceae 0.005188 4 0 336 1.25 2.275e-05 83461 genus Corallococcus 0.001297 1 1 116 1.39 0.000146 2316736 species Corallococcus exercitus 0.001297 1 1 61 1.16 7.104e-05 2316728 species Corallococcus carmarthensis 0.001297 1 1 38 1.21 4.817e-05 2316722 species Corallococcus aberystwythensis 0.001297 1 1 38 1.18 4.795e-05 2316720 species Corallococcus interemptor 0.002594 2 0 67 1.49 5.081e-06 32 genus Myxococcus 0.002594 2 0 53 1.57 7.553e-06 2648731 no rank unclassified Myxococcus 0.002594 2 2 53 1.57 7.553e-06 1929279 species Myxococcus sp. 0.001297 1 0 8 1 4.936e-06 224458 genus Pyxidicoccus 0.001297 1 1 8 1 4.936e-06 394095 species Pyxidicoccus fallax 0.001297 1 0 42 1.17 6.475e-07 213115 order Desulfovibrionales 0.001297 1 0 18 1.06 3.6e-07 194924 family Desulfovibrionaceae 0.001297 1 0 9 1.11 2.936e-07 872 genus Desulfovibrio 0.001297 1 0 9 1.11 7.081e-07 2593640 no rank unclassified Desulfovibrio 0.001297 1 1 8 1 1.159e-06 885 species Desulfovibrio sp. 13.28 10243 0 275498 1.13 0.0001087 1783270 clade FCB group 13.28 10243 0 275498 1.13 0.0001175 68336 clade Bacteroidetes/Chlorobi group 13.28 10243 4 275110 1.13 0.0001243 976 phylum Bacteroidetes 13.09 10095 2 268725 1.14 0.0004027 200643 class Bacteroidia 13.09 10092 274 268635 1.13 0.00047 171549 order Bacteroidales 3.954 3049 0 59291 1.26 0.002529 171551 family Porphyromonadaceae 3.953 3048 271 58852 1.27 0.007439 836 genus Porphyromonas 3.6 2776 2776 46009 1.27 0.1754 837 species Porphyromonas gingivalis 0.001297 1 1 48 1.29 0.0001724 36875 species Porphyromonas canoris 0.001297 1 0 33 1.24 5.406e-06 361210 no rank unclassified Porphyromonadaceae 0.001297 1 1 32 1.25 9.121e-05 1658779 species Porphyromonadaceae bacterium H1 3.111 2399 0 65898 1.1 0.003701 2005525 family Tannerellaceae 3.11 2398 17 65813 1.1 0.004099 375288 genus Parabacteroides 3.085 2379 2379 61796 1.11 0.04586 823 species Parabacteroides distasonis 0.002594 2 2 62 1 0.0001391 871327 species Parabacteroides chinchillae 0.001297 1 0 80 1.07 4.57e-05 195950 genus Tannerella 0.001297 1 1 78 1.08 7.071e-05 28112 species Tannerella forsythia 2.823 2177 8 67825 1.11 0.0004346 171552 family Prevotellaceae 2.806 2164 711 66708 1.11 0.0005123 838 genus Prevotella 0.9882 762 762 22824 1.11 0.02973 165179 species Prevotella copri 0.5551 428 0 17391 1.11 0.0001634 2638335 no rank unclassified Prevotella 0.5551 428 428 17391 1.11 0.0001634 59823 species Prevotella sp. 0.3333 257 257 5445 1.03 0.01056 28132 species Prevotella melaninogenica 0.003891 3 3 105 1.62 0.0003078 515414 species Prevotella falsenii 0.002594 2 2 118 1 0.0003278 470565 species Prevotella histicola 0.001297 1 1 47 1 0.0001264 28129 species Prevotella denticola 0.003891 3 0 467 1.04 0.0001674 577309 genus Paraprevotella 0.003891 3 0 466 1.05 0.0003003 2619893 no rank unclassified Paraprevotella 0.003891 3 3 466 1.05 0.0003003 2049036 species Paraprevotella sp. 0.002594 2 0 71 1.42 3.176e-05 1283313 genus Alloprevotella 0.002594 2 0 66 1.45 4.714e-05 2624623 no rank unclassified Alloprevotella 0.002594 2 2 59 1.44 7.378e-05 1872471 species Alloprevotella sp. 2.577 1987 16 59427 1.07 0.0008367 815 family Bacteroidaceae 2.541 1959 259 57695 1.07 0.001151 816 genus Bacteroides 1.765 1361 1361 34534 1.05 0.06338 818 species Bacteroides thetaiotaomicron 0.367 283 0 13373 1.06 0.0006238 2646097 no rank unclassified Bacteroides 0.367 283 283 13373 1.06 0.0006975 29523 species Bacteroides sp. 0.04539 35 35 894 1.04 0.001112 820 species Bacteroides uniformis 0.01167 9 9 339 1.06 0.0002885 329854 species Bacteroides intestinalis 0.01038 8 8 380 1.03 0.0007082 1871006 species Bacteroides congonensis 0.003891 3 3 123 1.07 0.000141 85831 species Bacteroides acidifaciens 0.001297 1 1 217 1.01 0.0004166 691816 species Bacteroides rodentium 0.01427 11 1 675 1.03 3.896e-05 909656 genus Phocaeicola 0.01297 10 0 596 1.03 5.076e-05 2762211 no rank unclassified Phocaeicola 0.01297 10 10 596 1.03 5.076e-05 2773926 species Phocaeicola sp. 0.001297 1 0 83 1 3.138e-05 45253 no rank unclassified Bacteroidaceae 0.001297 1 1 83 1 3.138e-05 2212467 species Bacteroidaceae bacterium 0.2594 200 0 4859 1.03 0.0001964 171550 family Rikenellaceae 0.2594 200 22 4843 1.03 0.0002708 239759 genus Alistipes 0.2231 172 172 3738 1.02 0.01123 214856 species Alistipes finegoldii 0.007781 6 0 325 1.04 2.933e-05 2608932 no rank unclassified Alistipes 0.007781 6 6 325 1.04 3.135e-05 1872444 species Alistipes sp. 0.003891 3 0 167 1.57 1.372e-06 185291 no rank unclassified Bacteroidales 0.003891 3 3 54 2.57 0.0001308 1633200 species Bacteroidales bacterium Barb4 0.002594 2 0 61 1.46 2.775e-06 2005520 family Dysgonomonadaceae 0.002594 2 0 58 1.48 2.502e-05 1784836 genus Fermentimonas 0.002594 2 2 54 1.48 0.0001509 1562970 species Fermentimonas caenicola 0.001297 1 0 68 1.01 7.306e-06 1853231 family Odoribacteraceae 0.001297 1 0 67 1.01 1.753e-05 283168 genus Odoribacter 0.001297 1 0 66 1 2.23e-05 2641225 no rank unclassified Odoribacter 0.001297 1 1 66 1 2.23e-05 1965233 species Odoribacter sp. 0.001297 1 0 13 1.54 2.645e-07 1970189 order Marinilabiliales 0.001297 1 0 7 2 8.185e-07 1573805 family Marinifilaceae 0.001297 1 0 7 2 1.956e-06 866673 genus Marinifilum 0.001297 1 0 7 2 4.053e-06 2642519 no rank unclassified Marinifilum 0.001297 1 1 7 2 5.848e-06 2033137 species Marinifilum sp. 0.1504 116 0 2789 1.11 9.601e-06 768503 class Cytophagia 0.1504 116 0 2789 1.11 9.64e-06 768507 order Cytophagales 0.1504 116 1 2730 1.11 5.966e-05 563798 family Cyclobacteriaceae 0.1491 115 4 2676 1.11 0.0007229 390846 genus Echinicola 0.144 111 111 2488 1.12 0.004388 390884 species Echinicola vietnamensis 0.03372 26 0 1042 1.25 1.606e-06 117743 class Flavobacteriia 0.03372 26 0 1042 1.25 1.619e-06 200644 order Flavobacteriales 0.03242 25 0 926 1.24 2.024e-06 49546 family Flavobacteriaceae 0.01686 13 0 369 1.17 6.963e-05 292691 genus Gramella 0.01686 13 13 369 1.17 0.0008558 1028746 species Gramella aestuarii 0.01427 11 0 267 1.43 1.872e-06 237 genus Flavobacterium 0.01427 11 11 252 1.45 0.000161 96345 species Flavobacterium psychrophilum 0.001297 1 0 7 1.29 1.153e-06 283735 genus Leeuwenhoekiella 0.001297 1 1 7 1.29 1.524e-05 1655491 species Leeuwenhoekiella nanhaiensis 0.001297 1 0 108 1.26 1.053e-06 2762318 family Weeksellaceae 0.001297 1 0 96 1.28 1.118e-06 2782232 no rank Chryseobacterium group 0.001297 1 0 96 1.28 1.301e-06 59732 genus Chryseobacterium 0.001297 1 1 6 1 1.573e-05 741074 species Chryseobacterium oncorhynchi 0.002594 2 0 117 1.32 6.201e-07 1853228 class Chitinophagia 0.002594 2 0 117 1.32 6.249e-07 1853229 order Chitinophagales 0.002594 2 0 117 1.32 6.377e-07 563835 family Chitinophagaceae 0.002594 2 0 95 1.24 4.619e-06 504481 genus Sediminibacterium 0.002594 2 0 95 1.24 5.198e-06 2635961 no rank unclassified Sediminibacterium 0.002594 2 2 95 1.24 5.198e-06 1917865 species Sediminibacterium sp. 2.934 2262 0 48116 1.33 0.002715 200918 phylum Thermotogae 2.934 2262 1 48107 1.33 0.002955 188708 class Thermotogae 2.932 2261 1 48018 1.33 0.006484 2419 order Thermotogales 2.931 2260 1 47950 1.33 0.01517 1643950 family Fervidobacteriaceae 2.93 2259 86 47804 1.33 0.02334 2422 genus Fervidobacterium 2.774 2139 2139 44805 1.22 0.115 93466 species Fervidobacterium pennivorans 0.04409 34 34 893 6.53 0.004338 2424 species Fervidobacterium nodosum 2.729 2104 0 44307 1.2 0.0002645 203691 phylum Spirochaetes 2.729 2104 0 44295 1.2 0.0002907 203692 class Spirochaetia 2.727 2103 0 44280 1.2 0.0004402 136 order Spirochaetales 2.727 2103 0 44248 1.2 0.001447 137 family Spirochaetaceae 2.727 2103 208 44200 1.2 0.03724 1911556 genus Sediminispirochaeta 2.458 1895 1895 33724 1.2 0.08629 55206 species Sediminispirochaeta smaragdinae 0.001297 1 0 13 2 2.311e-06 1643686 order Brachyspirales 0.001297 1 0 13 2 2.311e-06 143786 family Brachyspiraceae 0.001297 1 0 13 2 2.311e-06 29521 genus Brachyspira 0.001297 1 1 11 2 1.238e-05 1287055 species Brachyspira hampsonii 0.8897 686 0 15460 1.13 1.916e-05 1783257 clade PVC group 0.8897 686 0 15404 1.13 5.201e-05 74201 phylum Verrucomicrobia 0.8637 666 0 14819 1.13 0.000196 414999 class Opitutae 0.8637 666 0 14788 1.13 0.001464 415001 order Puniceicoccales 0.8637 666 1 14788 1.13 0.001626 415002 family Puniceicoccaceae 0.8624 665 0 14725 1.13 0.00929 442430 genus Coraliomargarita 0.8624 665 665 14721 1.13 0.03533 395922 species Coraliomargarita akajimensis 0.02594 20 0 537 1 4.752e-06 203494 class Verrucomicrobiae 0.02594 20 0 537 1 4.867e-06 48461 order Verrucomicrobiales 0.02594 20 0 523 1 2.921e-05 1647988 family Akkermansiaceae 0.02594 20 0 520 1 0.0001072 239934 genus Akkermansia 0.02594 20 20 511 1 0.0002585 239935 species Akkermansia muciniphila 0.5654 436 0 10016 1.11 3.246e-05 57723 phylum Acidobacteria 0.5654 436 0 9990 1.11 7.52e-05 204432 class Acidobacteriia 0.5642 435 0 9981 1.11 0.0001128 204433 order Acidobacteriales 0.5642 435 4 9978 1.11 0.0001137 204434 family Acidobacteriaceae 0.559 431 0 9691 1.11 0.002065 392733 genus Terriglobus 0.559 431 431 9668 1.11 0.005781 392734 species Terriglobus roseus 0.001297 1 0 1 1 3.613e-08 332160 order Bryobacterales 0.001297 1 0 1 1 5.235e-08 1470392 no rank unclassified Bryobacterales 0.001297 1 1 1 1 5.673e-08 2026791 species Bryobacterales bacterium 0.02334 18 0 800 1.22 6.599e-05 1930617 phylum Calditrichaeota 0.02334 18 0 800 1.22 0.0002259 1962850 class Calditrichia 0.02334 18 0 800 1.22 0.0002259 1962852 order Calditrichales 0.02334 18 0 800 1.22 0.0002259 1962854 family Calditrichaceae 0.02334 18 0 800 1.22 0.0002809 187144 genus Caldithrix 0.02334 18 0 800 1.22 0.0006007 2641444 no rank unclassified Caldithrix 0.02334 18 18 800 1.22 0.0006007 1962856 species Caldithrix sp. 0.001297 1 0 202 1.27 2.332e-06 49928 no rank unclassified Bacteria 0.001297 1 1 21 1.57 0.0001184 1635281 species bacterium 42_11 0.001297 1 0 45 1.2 2.159e-06 32066 phylum Fusobacteria 0.001297 1 0 44 1.2 2.158e-06 203490 class Fusobacteriia 0.001297 1 0 44 1.2 2.167e-06 203491 order Fusobacteriales 0.001297 1 0 26 1.35 4.123e-06 1129771 family Leptotrichiaceae 0.001297 1 0 25 1.36 2.508e-05 34104 genus Streptobacillus 0.001297 1 1 5 1 3.239e-05 1712031 species Streptobacillus notomytis 1.609 1241 0 28101 1.17 5.366e-05 2157 superkingdom Archaea 1.609 1241 0 28058 1.17 9.136e-05 28890 phylum Euryarchaeota 1.609 1241 0 28031 1.17 0.0001315 2290931 clade Stenosarchaea group 1.609 1241 8 28027 1.17 0.0001997 183963 class Halobacteria 1.599 1233 0 26746 1.17 0.0007376 1644060 order Natrialbales 1.599 1233 22 26746 1.17 0.0007376 1644061 family Natrialbaceae 0.7457 575 9 11382 1.21 0.004436 29287 genus Natronococcus 0.734 566 566 10727 1.21 0.02391 29288 species Natronococcus occultus 0.4837 373 4 7504 1.14 0.009466 2256 genus Natronobacterium 0.4786 369 369 7406 1.14 0.01942 44930 species Natronobacterium gregoryi 0.3411 263 9 6289 1.12 0.004128 332951 genus Halovivax 0.3281 253 253 5268 1.12 0.01523 387341 species Halovivax ruber 0.001297 1 1 981 1.11 0.002441 332953 species Halovivax asiaticus 0.7159 552 0 7228 1.12 1.179e-06 2759 superkingdom Eukaryota 0.7107 548 3 7131 1.12 1.236e-06 33154 clade Opisthokonta 0.7068 545 0 7045 1.11 4.778e-06 4751 kingdom Fungi 0.7068 545 1 7044 1.11 4.921e-06 451864 subkingdom Dikarya 0.3696 285 0 5589 1.11 4.991e-06 4890 phylum Ascomycota 0.3696 285 0 5589 1.11 5.049e-06 716545 clade saccharomyceta 0.3696 285 0 5585 1.11 4.607e-05 147537 subphylum Saccharomycotina 0.3696 285 0 5585 1.11 4.607e-05 4891 class Saccharomycetes 0.3696 285 0 5585 1.11 4.607e-05 4892 order Saccharomycetales 0.3696 285 1 5574 1.11 0.0001234 4893 family Saccharomycetaceae 0.3683 284 274 5530 1.11 0.0006308 4930 genus Saccharomyces 0.006484 5 5 205 1.2 0.0007625 27292 species Saccharomyces pastorianus 0.003891 3 0 123 1.08 0.001159 4932 species Saccharomyces cerevisiae 0.003891 3 3 123 1.08 0.001159 559292 subspecies Saccharomyces cerevisiae S288C 0.002594 2 0 79 1.1 0.00117 2620749 no rank unclassified Saccharomyces 0.002594 2 2 79 1.1 0.00117 252598 species Saccharomyces boulardii (nom. inval.) 0.3359 259 1 1442 1.12 4.628e-06 5204 phylum Basidiomycota 0.3346 258 0 1431 1.12 6.153e-06 5302 subphylum Agaricomycotina 0.3346 258 2 1416 1.12 3.488e-05 155616 class Tremellomycetes 0.332 256 0 1388 1.11 4.768e-05 5234 order Tremellales 0.332 256 2 1377 1.11 5.701e-05 1884633 family Cryptococcaceae 0.3113 240 31 1118 1.11 9.593e-05 5206 genus Cryptococcus 0.2114 163 0 621 1.09 0.0003191 1897064 species group Cryptococcus neoformans species complex 0.2114 163 0 621 1.09 0.0003191 5207 species Cryptococcus neoformans 0.2114 163 0 621 1.09 0.0003191 40410 subspecies Cryptococcus neoformans var. neoformans 0.2114 163 163 621 1.09 0.0003191 214684 strain Cryptococcus neoformans var. neoformans JEC21 0.05966 46 30 246 1.07 5.497e-05 1884637 species group Cryptococcus gattii species complex 0.009078 7 0 37 1.03 2.88e-05 1859096 species Cryptococcus gattii VGII 0.009078 7 7 37 1.03 2.88e-05 294750 subspecies Cryptococcus gattii VGII R265 0.006484 5 5 38 1.08 3.429e-05 2011032 species Cryptococcus cf. gattii 0.005188 4 0 25 1.28 2.182e-05 37769 species Cryptococcus gattii VGI 0.005188 4 4 25 1.28 2.182e-05 367775 subspecies Cryptococcus gattii WM276 0.01816 14 3 192 1.1 1.537e-05 490731 genus Kwoniella 0.01427 11 11 150 1.03 6.391e-05 1734106 species Kwoniella shandongensis 0.005188 4 0 89 1.27 3.07e-06 554915 clade Amoebozoa 0.005188 4 0 89 1.27 3.581e-06 2605435 phylum Evosea 0.005188 4 0 89 1.27 1.11e-05 555406 clade Archamoebae 0.005188 4 0 89 1.27 1.11e-05 2682482 order Mastigamoebida 0.005188 4 0 89 1.27 1.11e-05 33084 family Entamoebidae 0.005188 4 0 89 1.27 1.11e-05 5758 genus Entamoeba 0.005188 4 0 89 1.27 5.354e-05 46681 species Entamoeba dispar 0.005188 4 4 89 1.27 5.354e-05 370354 subspecies Entamoeba dispar SAW760 1.183 912 40 95642 1.28 9.943e-05 10239 superkingdom Viruses 0.9195 709 0 76191 1.29 0.0001871 2731341 clade Duplodnaviria 0.9195 709 0 76191 1.29 0.0001871 2731360 kingdom Heunggongvirae 0.9078 700 0 75249 1.28 0.0002011 2731618 phylum Uroviricota 0.9078 700 0 75249 1.28 0.0002012 2731619 class Caudoviricetes 0.9078 700 54 75249 1.28 0.0002012 28883 order Caudovirales 0.5499 424 69 52168 1.2 0.0003691 10699 family Siphoviridae 0.3009 232 93 25993 1.18 0.0004396 196894 no rank unclassified Siphoviridae 0.02853 22 22 3132 1.07 0.0892 2859526 species Enterococcus phage SEsuP-1 0.02334 18 18 1318 2.09 0.06224 2782522 species Staphylococcus phage PhiSepi-HH3 0.01816 14 14 2280 1.04 0.07627 10713 species Enterobacteria phage phi80 0.01167 9 9 642 1.69 0.0122 2686384 species Lactobacillus phage JNU_P5 0.01038 8 8 1064 1.2 0.06842 1458852 species Listeria phage LP-030-3 0.009078 7 7 517 1.1 0.01346 2663264 species Pseudomonas phage AUS531phi 0.007781 6 6 464 1.3 0.01603 1868596 species Pseudomonas phage MD8 0.006484 5 5 239 1.26 0.009602 347324 species Pseudomonas phage F10 0.005188 4 4 358 1.2 0.002021 2735572 species Escherichia phage CMS-2020a 0.005188 4 4 377 1.11 0.009559 1754216 species Pseudomonas phage phi1 0.005188 4 4 795 1 0.02295 12417 species Lactobacillus phage phiadh 0.005188 4 4 502 1.22 0.03213 1147140 species Salmonella phage SPN3UB 0.003891 3 3 37 1.73 0.3854 2751387 species Stx2a-converting phage Stx2_EH1910 0.003891 3 3 224 1 0.005045 2686379 species Lactobacillus phage JNU_P1 0.003891 3 3 84 2.52 0.002396 2510475 species Klebsiella phage ST101-KPC2phi6.3 0.002594 2 2 94 1.16 0.003471 2829367 species Pseudomonas phage BUCT566 0.002594 2 2 328 1.29 0.006494 1755689 species Pseudomonas phage YMC11/02/R656 0.002594 2 2 108 1.19 0.007158 1591073 species Listeria phage vB_LmoS_293 0.002594 2 2 108 1 0.003957 1542116 species Pseudomonas phage JBD68 0.002594 2 2 234 1 0.008058 1115653 species Escherichia phage 1720a-02 0.001297 1 1 62 1.45 0.002189 663241 species Enterococcus phage phiEf11 0.001297 1 1 109 1.01 0.005926 40522 species Listeria phage A500 0.001297 1 1 29 1 0.001165 40521 species Listeria phage A118 0.001297 1 1 20 1 0.04695 291401 species Enterobacteria phage CP-1639 0.001297 1 1 235 1 0.007648 2726968 species Acinetobacter phage 5W 0.001297 1 1 239 1 0.01698 2724332 species Escherichia phage Lys8385Vzw 0.001297 1 1 48 1 0.00779 2580353 species Pseudomonas phage UMP151 0.001297 1 1 15 1 0.005695 2563500 species Pseudomonas phage vB_Pae_BR153a 0.001297 1 1 82 1 0.01237 2548196 species Streptococcus phage Javan48 0.001297 1 1 32 1.34 0.001047 2547988 species Streptococcus phage Javan119 0.001297 1 1 40 1 0.001176 1977997 species Phage apr34_1792 0.001297 1 1 61 1 0.002334 1777052 species Pseudomonas phage JBD44 0.001297 1 1 21 1 0.0103 1542110 species Pseudomonas phage F_TK1718sp/PAK 0.001297 1 1 9 1 0.0003867 1168549 species Salmonella phage vB_SosS_Oslo 0.001297 1 1 41 1 0.002089 1105171 species Bacteroides phage B124-14 0.0428 33 6 4328 1.22 0.005841 2842522 subfamily Azeredovirinae 0.03502 27 8 3589 1.2 0.008961 1623298 genus Phietavirus 0.02075 16 16 1980 1.12 0.04047 320845 species Staphylococcus virus 55 0.002594 2 0 84 1.26 0.05683 2846296 species Staphylococcus virus StauST398-5 0.002594 2 2 84 1.26 0.05683 1308897 subspecies Staphylococcus phage StauST398-5 0.001297 1 1 76 1.79 0.01331 320844 species Staphylococcus virus 71 0.0428 33 2 4041 1.32 0.09626 186765 genus Lambdavirus 0.0402 31 1 3949 1.31 0.113 335795 no rank unclassified Lambdavirus 0.03631 28 28 3506 1.32 0.3366 2024003 species Escherichia phage DN1 0.001297 1 1 49 1 0.01004 10743 species Phage 21 0.001297 1 1 299 1.23 0.1275 10738 species Enterobacteria phage PA-2 0.03113 24 7 3263 1.26 0.1008 2843432 genus Pankowvirus 0.01297 10 0 1012 1.44 0.3657 2844169 species Escherichia virus 1717 0.01297 10 10 1012 1.44 0.3657 563769 subspecies Stx2-converting phage 1717 0.007781 6 0 816 1.17 0.1066 2844135 species Enterobacteria virus YYZ2008 0.007781 6 6 816 1.17 0.1066 564886 subspecies Enterobacteria phage YYZ-2008 0.001297 1 0 247 1.15 0.07968 2844236 species Escherichia virus WGPS8 0.001297 1 1 247 1.15 0.07968 1226263 subspecies Stx2-converting phage Stx2a_WGPS8 0.01167 9 2 1484 1.13 0.006048 2842523 subfamily Bronfenbrennervirinae 0.009078 7 7 1025 1.13 0.01989 1623274 genus Biseptimavirus 0.007781 6 3 269 1.15 0.004457 1623287 genus Detrevirus 0.003891 3 3 190 1.22 0.01029 1129146 species Pseudomonas virus PMG1 0.006484 5 0 368 1.02 0.001353 1623286 genus Casadabanvirus 0.006484 5 0 342 1 0.003641 2115965 no rank unclassified Casadabanvirus 0.003891 3 3 293 1 0.03039 2283028 species Pseudomonas phage YMC12/01/R24 0.002594 2 2 47 1 0.1697 2563588 species Pseudomonas phage vB_Pae_CF74a 0.003891 3 3 388 1.12 0.02093 2843451 genus Sawaravirus 0.003891 3 0 318 1.14 0.0001951 1910976 subfamily Guernseyvirinae 0.003891 3 0 318 1.14 0.0004774 1910991 genus Jerseyvirus 0.003891 3 0 318 1.14 0.0009241 2025810 no rank unclassified Jerseyvirus 0.003891 3 3 318 1.14 0.06636 2831178 species Salmonella phage JD01 0.002594 2 1 225 1 0.001498 1623299 genus Phifelvirus 0.001297 1 0 144 1 0.002578 1633151 species Enterococcus virus FL3 0.001297 1 1 142 1 0.005244 673838 subspecies Enterococcus phage phiFL3B 0.001297 1 0 61 1.05 0.004514 2843420 genus Marienburgvirus 0.001297 1 0 22 1.14 0.02193 2844207 species Escherichia virus JLK2012 0.001297 1 1 22 1.14 0.02193 1147722 subspecies Escherichia phage JLK-2012 0.001297 1 0 39 1 0.001313 2843379 genus Fattrevirus 0.001297 1 0 39 1 0.001313 2845147 species Lactobacillus virus phiAT3 0.001297 1 1 39 1 0.001313 279281 subspecies Lactobacillus phage phiAT3 0.001297 1 0 6 1 5.912e-05 2842530 subfamily Trabyvirinae 0.001297 1 0 6 1 5.912e-05 2843051 genus Slepowronvirus 0.001297 1 0 6 1 0.0001908 2845521 species Listeria virus LP101 0.001297 1 1 6 1 0.0001908 1458856 subspecies Listeria phage LP-101 0.001297 1 0 186 1 0.001496 2842527 subfamily Hendrixvirinae 0.001297 1 0 186 1 0.0236 2843126 genus Wanchaivirus 0.001297 1 0 186 1 0.04326 2169920 species Escherichia virus HK106 0.001297 1 1 186 1 0.04326 432198 subspecies Enterobacteria phage HK106 0.001297 1 0 215 1 0.0009022 2560250 genus Vieuvirus 0.001297 1 0 209 1 0.001221 2576462 no rank unclassified Vieuvirus 0.001297 1 1 143 1 0.003125 1718841 species Acinetobacter phage Ab105-2phi 0.1829 141 2 11255 1.57 9.663e-05 10662 family Myoviridae 0.06614 51 4 4761 1.24 0.002343 857479 subfamily Peduovirinae 0.03242 25 1 2673 1.28 0.01035 2732980 genus Felsduovirus 0.02983 23 0 2592 1.29 0.09503 2844176 species Escherichia virus 500465-1 0.02983 23 23 2592 1.29 0.09503 2716351 subspecies Escherichia phage 500465-1 0.001297 1 1 24 1.5 0.001596 194701 species Salmonella virus Fels2 0.01816 14 0 1210 1.29 0.02676 2733085 genus Xuanwuvirus 0.01167 9 0 957 1.25 0.04522 2844177 species Escherichia virus 500465-2 0.01167 9 9 957 1.25 0.04522 2716352 subspecies Escherichia phage 500465-2 0.006484 5 0 246 1.43 0.03245 2844179 species Escherichia virus 520873 0.006484 5 5 246 1.43 0.03245 2716354 subspecies Escherichia phage 520873 0.007781 6 1 439 1.05 0.002524 140410 genus Peduovirus 0.005188 4 0 276 1.08 0.005236 2563343 no rank unclassified Peduovirus 0.005188 4 4 276 1.08 0.01564 1567486 species Enterobacteria phage P88 0.001297 1 0 108 1 0.01106 2560457 species Escherichia virus fiAA91ss 0.001297 1 1 108 1 0.01106 1357825 subspecies Enterobacteria phage fiAA91-ss 0.002594 2 0 6 1 5.746e-05 2732977 genus Citexvirus 0.002594 2 0 6 1 0.001596 2748758 no rank unclassified Citexvirus 0.002594 2 2 6 1 0.002845 1542106 species Pseudomonas phage F_HA1961sp/Pa1641 0.05188 40 1 1346 4.15 0.00345 186789 genus Punavirus 0.04669 36 36 1021 5.11 0.00521 10678 species Escherichia virus P1 0.002594 2 0 77 1 0.003178 2560732 species Salmonella virus SJ46 0.002594 2 2 77 1 0.003178 1815968 subspecies Salmonella phage SJ46 0.001297 1 0 183 1.04 0.005725 2560452 species Escherichia virus RCS47 0.001297 1 1 183 1.04 0.005725 1590550 subspecies Escherichia phage RCS47 0.03242 25 11 2674 1.17 7.077e-05 196896 no rank unclassified Myoviridae 0.007781 6 6 519 1.37 0.2629 282785 species Phage TP 0.006484 5 5 501 1.04 0.005516 2014434 species Escherichia phage D6 0.001297 1 1 115 1.39 0.006958 66284 species Shigella phage SfII 0.001297 1 1 70 1.19 0.004456 55884 species Enterobacteria phage SfV 0.001297 1 1 245 1.03 0.02121 1225789 species Enterobacteria phage SfI 0.01297 10 0 1194 1.13 0.03271 2560108 genus Brunovirus 0.01297 10 0 1194 1.13 0.03271 2560731 species Salmonella virus SEN34 0.01297 10 10 1194 1.13 0.03271 1647463 subspecies Salmonella phage SEN34 0.007781 6 0 253 1.95 0.0002199 2842517 subfamily Emmerichvirinae 0.007781 6 0 253 1.95 0.0004096 2842588 genus Ceceduovirus 0.007781 6 0 253 1.95 0.001489 2852241 no rank unclassified Ceceduovirus 0.007781 6 6 253 1.95 0.003116 2759193 species Aeromonas phage AP1 0.002594 2 0 27 1.19 5.659e-05 1925779 genus Nankokuvirus 0.002594 2 2 26 1.15 0.0001827 1925780 species Pseudomonas virus Ab03 0.002594 2 0 186 1.3 1.181e-05 1198136 subfamily Tevenvirinae 0.001297 1 0 50 2 6.381e-05 1913652 genus Mosigvirus 0.001297 1 0 50 2 0.0001103 2562699 no rank unclassified Mosigvirus 0.001297 1 1 50 2 0.002421 2502414 species Escherichia phage vB_EcoM_G2285 0.001297 1 1 112 1.04 6.077e-05 10663 genus Tequatrovirus 0.001297 1 0 173 1.18 0.004726 2733114 genus Mushuvirus 0.001297 1 0 173 1.18 0.004726 2734119 species Faecalibacterium virus Mushu 0.001297 1 1 173 1.18 0.004726 2070185 subspecies Faecalibacterium phage FP_Mushu 0.001297 1 0 222 1 0.004607 2733108 genus Lagaffevirus 0.001297 1 0 222 1 0.004607 2734112 species Faecalibacterium virus Lagaffe 0.001297 1 1 222 1 0.004607 2070183 subspecies Faecalibacterium phage FP_Lagaffe 0.001297 1 0 141 1 5.962e-05 1985285 subfamily Ounavirinae 0.001297 1 0 141 1 0.0005604 2053698 no rank unclassified Ounavirinae 0.001297 1 1 141 1 0.005895 694060 species Staphylococcus phage SA1 0.1038 80 4 7400 1.37 0.0001733 10744 family Podoviridae 0.04669 36 16 2993 1.53 0.0079 1981156 subfamily Sepvirinae 0.01427 11 0 706 1.61 0.004428 1981159 genus Oslovirus 0.01297 10 0 657 1.64 0.01066 2108460 no rank unclassified Oslovirus 0.01297 10 10 523 1.75 0.01129 2070178 species Escherichia phage GER2 0.001297 1 0 22 1 0.02348 1981169 species Escherichia virus TL2011 0.001297 1 1 22 1 0.02348 1124655 subspecies Escherichia phage TL-2011c 0.01038 8 7 904 1.33 0.01185 1981157 genus Traversvirus 0.001297 1 0 44 1 0.004449 2844180 species Escherichia virus 86 0.001297 1 1 44 1 0.004449 379329 subspecies Stx2-converting phage 86 0.001297 1 0 74 1 0.00227 1981158 genus Diegovirus 0.001297 1 0 72 1 0.01638 1981165 species Shigella virus 7502Stx 0.001297 1 1 72 1 0.01638 1416032 subspecies Shigella phage 75/02 Stx 0.03761 29 8 3138 1.24 0.005648 186794 genus Lederbergvirus 0.02205 17 7 1754 1.19 0.004433 329158 no rank unclassified Lederbergvirus 0.005188 4 4 235 1.23 0.01012 1647458 species Salmonella phage SEN22 0.002594 2 2 83 2.23 0.004736 2746235 species Escherichia phage vB_EcoP_Kapi1 0.002594 2 2 176 1 0.01265 2045361 species Escherichia phage APC_JM3.2 0.002594 2 2 694 1.12 0.0135 1090133 species Enterobacteria phage IME10 0.005188 4 4 575 1.27 0.01206 10754 species Salmonella virus P22 0.007781 6 1 378 1.23 0.001886 1720324 genus Hollowayvirus 0.005188 4 4 165 1.11 0.005213 1273707 species Pseudomonas virus H66 0.001297 1 0 118 1 0.001427 2562664 no rank unclassified Hollowayvirus 0.001297 1 1 99 1 0.005585 2860997 species Pseudomonas phage PA8 0.005188 4 0 371 1.32 0.00123 542960 genus Uetakevirus 0.005188 4 0 371 1.32 0.002447 1231360 no rank unclassified Uetakevirus 0.005188 4 4 366 1.32 0.01422 1124654 species Escherichia phage TL-2011b 0.001297 1 0 233 1.17 6.815e-06 196895 no rank unclassified Podoviridae 0.001297 1 1 31 1 0.0007054 2510471 species Klebsiella phage ST512-KPC3phi13.3 0.001297 1 0 50 1.52 3.248e-06 2560065 family Herelleviridae 0.001297 1 0 38 1.47 4.721e-06 2560070 subfamily Bastillevirinae 0.001297 1 0 8 1 1.41e-05 1918010 genus Bastillevirus 0.001297 1 0 8 1 3.411e-05 2315196 no rank unclassified Bastillevirus 0.001297 1 1 8 1 0.0009028 2282408 species Bacillus phage Maceta 0.01167 9 0 944 1.61 2.861e-05 2731361 phylum Peploviricota 0.01167 9 0 944 1.61 2.861e-05 2731363 class Herviviricetes 0.01167 9 0 944 1.61 2.861e-05 548681 order Herpesvirales 0.01167 9 0 944 1.61 3.27e-05 10292 family Herpesviridae 0.01167 9 0 935 1.62 8.081e-05 10357 subfamily Betaherpesvirinae 0.01167 9 0 935 1.62 0.0001562 10358 genus Cytomegalovirus 0.01038 8 8 783 1.65 0.0003119 10359 species Human betaherpesvirus 5 0.001297 1 1 152 1.47 0.0003854 47929 species Macacine betaherpesvirus 3 0.1945 150 53 13859 1.21 0.0002668 12333 no rank unclassified bacterial viruses 0.05058 39 39 3891 1.28 0.186 2716355 species Escherichia phage 503046 0.02334 18 18 1490 1.29 0.05535 2783517 species Escherichia phage 204576 0.02334 18 18 3311 1.13 0.1106 129862 species Phage Gifsy-2 0.02205 17 17 1867 1.24 0.05953 129861 species Phage Gifsy-1 0.002594 2 2 269 1.07 0.01331 2859565 species Enterococcus phage VEsP-2 0.001297 1 1 22 1 0.01401 356350 species Phage 258-320 0.001297 1 1 191 1 0.1322 2558708 species Streptococcus satellite phage Javan449 0.001297 1 1 67 1 0.001649 128975 species Salmonella phage Fels-1 0.006484 5 0 444 1.01 1.139e-05 2731342 clade Monodnaviria 0.006484 5 0 431 1 0.0004848 2732090 kingdom Loebvirae 0.006484 5 0 431 1 0.0004848 2732410 phylum Hofneiviricota 0.006484 5 0 431 1 0.0004848 2732411 class Faserviricetes 0.006484 5 0 431 1 0.0004848 2732094 order Tubulavirales 0.006484 5 3 431 1 0.0005104 10860 family Inoviridae 0.001297 1 0 83 1 0.0001515 456491 no rank unclassified Inoviridae 0.001297 1 1 83 1 0.01283 2686285 species Pseudomonas phage pf8_ST274-AUS411 0.001297 1 0 77 1 0.00601 2732875 genus Primolicivirus 0.001297 1 1 77 1 0.00601 2011081 species Pseudomonas virus Pf1 0.005188 4 0 210 2.23 4.643e-06 12429 no rank unclassified viruses 0.005188 4 0 210 2.23 5.953e-06 2204151 no rank unclassified DNA viruses 0.005188 4 0 210 2.23 0.0009295 79205 no rank unclassified dsDNA phages 0.005188 4 4 210 2.23 0.01276 320831 species Staphylococcus phage PT1028 0.003891 3 0 150 1.22 5.186e-07 2559587 clade Riboviria 0.003891 3 0 144 1.23 6.207e-07 2732396 kingdom Orthornavirae 0.002594 2 0 100 1.12 4.316e-06 2732405 phylum Duplornaviricota 0.002594 2 0 83 1.1 2.868e-05 2732458 class Chrymotiviricetes 0.002594 2 0 83 1.1 2.868e-05 2732540 order Ghabrivirales 0.002594 2 0 83 1.1 3.981e-05 11006 family Totiviridae 0.002594 2 0 83 1.1 0.0002877 11007 genus Totivirus 0.002594 2 2 83 1.1 0.002982 11008 species Saccharomyces cerevisiae virus L-A 0.001297 1 0 24 1.71 2.937e-07 2732408 phylum Pisuviricota 0.001297 1 0 20 1.85 3.197e-07 2732506 class Pisoniviricetes 0.001297 1 0 20 1.85 5.285e-07 464095 order Picornavirales 0.001297 1 0 20 1.85 9.652e-07 12058 family Picornaviridae 0.001297 1 0 20 1.85 1.591e-06 12059 genus Enterovirus 0.001297 1 1 20 1.85 1.107e-05 138950 species Enterovirus C 0.001297 1 0 63 1.35 3.295e-06 186616 no rank environmental samples 0.001297 1 1 16 1.69 1.073e-05 340016 species uncultured virus 0.6575 507 0 45700 1.63 0.006306 2787854 no rank other entries 0.6575 507 0 45700 1.63 0.006306 28384 no rank other sequences 0.6575 507 0 45700 1.63 0.006306 81077 no rank artificial sequences 0.6575 507 507 45700 1.63 0.006306 32630 species synthetic construct