# HG changeset patch
# User iuc
# Date 1754398214 0
# Node ID 7337f9722ad7795b32f4020436736da03a9aa007
# Parent  78b69342c280f5cf94ad4ca647429442985e2acc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit d2787f61f714a0b30eb2806456b78d2b1e2ff280

diff -r 78b69342c280 -r 7337f9722ad7 alpha_diversity.xml
--- a/alpha_diversity.xml	Fri Nov 22 09:27:53 2024 +0000
+++ b/alpha_diversity.xml	Tue Aug 05 12:50:14 2025 +0000
@@ -49,7 +49,7 @@
             <param name="alpha" value="Si"/>
             <output name="output" ftype="txt">
                 <assert_contents>
-                    <has_text text="Simpson's diversity: 0.9805668888241948"/>
+                    <has_text text="Simpson's index of diversity: 0.9805669261928186"/>
                 </assert_contents>
             </output>
         </test>
@@ -58,7 +58,7 @@
             <param name="alpha" value="ISi"/>
             <output name="output" ftype="txt">
                 <assert_contents>
-                    <has_text text="Simpson's Reciprocal Index: 51.45856424909617"/>
+                    <has_text text="Simpson's Reciprocal Index: 51.458663200798206"/>
                 </assert_contents>
             </output>              
         </test>
@@ -67,7 +67,7 @@
             <param name="alpha" value="F"/>
             <output name="output" ftype="txt">
                 <assert_contents>
-                    <has_text text="Fisher's index: 1688.9352909860668"/>
+                    <has_text text="Fisher's index: 11.987142187765064"/>
                 </assert_contents>
             </output>
         </test>
diff -r 78b69342c280 -r 7337f9722ad7 macros.xml
--- a/macros.xml	Fri Nov 22 09:27:53 2024 +0000
+++ b/macros.xml	Tue Aug 05 12:50:14 2025 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">1.2</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">1.2.1</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="biotools">
         <xrefs>
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k1.11176.children.fa
Binary file test-data/extract_kraken_reads/out1.k1.11176.children.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k1.e10386.children.fa
Binary file test-data/extract_kraken_reads/out1.k1.e10386.children.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k2.11176.fa
Binary file test-data/extract_kraken_reads/out1.k2.11176.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k2.11176.fq
Binary file test-data/extract_kraken_reads/out1.k2.11176.fq has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k2.11176.max2.fa
Binary file test-data/extract_kraken_reads/out1.k2.11176.max2.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k2.11176.parents.fa
Binary file test-data/extract_kraken_reads/out1.k2.11176.parents.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out1.k2.exclude_both.fa
Binary file test-data/extract_kraken_reads/out1.k2.exclude_both.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/extract_kraken_reads/out2.k2.11176.fa
Binary file test-data/extract_kraken_reads/out2.k2.11176.fa has changed
diff -r 78b69342c280 -r 7337f9722ad7 test-data/mpa_output.tabular
--- a/test-data/mpa_output.tabular	Fri Nov 22 09:27:53 2024 +0000
+++ b/test-data/mpa_output.tabular	Tue Aug 05 12:50:14 2025 +0000
@@ -1,215 +1,215 @@
-k__Eukaryota	756
-k__Eukaryota|k__Metazoa	402
-k__Eukaryota|k__Metazoa|p__Chordata	402
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia	402
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates	402
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae	402
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo	402
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo|s__Homo_sapiens	402
-k__Eukaryota|k__Fungi	342
-k__Eukaryota|k__Fungi|p__Ascomycota	341
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes	336
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales	336
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae	333
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces	329
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae	293
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_paradoxus	15
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_eubayanus	10
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces|s__Kluyveromyces_marxianus	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella|s__Sugiyamaella_lignohabitans	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida|s__Candida_dubliniensis	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes	3
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora|s__Neurospora_crassa	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia|s__Pyricularia_pennisetigena	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus|s__Aspergillus_luchuensis	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces	1
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces|s__Schizosaccharomyces_pombe	1
-k__Eukaryota|p__Apicomplexa	5
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida	4
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida	4
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae	4
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium	4
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_vivax	1
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_malariae	1
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_coatneyi	1
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_chabaudi	1
-k__Eukaryota|p__Apicomplexa|c__Conoidasida	1
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida	1
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae	1
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae|g__Cryptosporidium	1
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae|g__Cryptosporidium|s__Cryptosporidium_parvum	1
-k__Eukaryota|p__Evosea	1
-k__Eukaryota|p__Evosea|c__Eumycetozoa	1
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales	1
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae	1
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae|g__Dictyostelium	1
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae|g__Dictyostelium|s__Dictyostelium_discoideum	1
-k__Bacteria	51
-k__Bacteria|p__Firmicutes	17
-k__Bacteria|p__Firmicutes|c__Clostridia	9
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales	9
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae	4
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium	4
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_sp._MF28	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_pasteurianum	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_carboxidivorans	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae	2
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Clostridioides	2
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides_difficile	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnoclostridium	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnoclostridium|s__[Clostridium]_hylemonae	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Monoglobus	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Monoglobus|s__Monoglobus_pectinilyticus	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis|g__Mogibacterium	1
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis|g__Mogibacterium|s__Mogibacterium_pumilum	1
-k__Bacteria|p__Firmicutes|c__Bacilli	8
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales	6
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae	3
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus	2
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Halobacillus	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Halobacillus|s__Halobacillus_litoralis	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae	2
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_saccharolyticus	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Jeotgalicoccus	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Jeotgalicoccus|s__Jeotgalicoccus_saudimassiliensis	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae|g__Paenibacillus	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae|g__Paenibacillus|s__Paenibacillus_azoreducens	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	2
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus_lactis	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Weissella	1
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Weissella|s__Weissella_paramesenteroides	1
-k__Bacteria|p__Tenericutes	2
-k__Bacteria|p__Tenericutes|c__Mollicutes	1
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales	1
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae	1
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae|g__Mycoplasma	1
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae|g__Mycoplasma|s__Mycoplasma_sp._Ms02	1
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales	1
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae	1
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma	1
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma_phocicerebrale	1
-k__Bacteria|p__Cyanobacteria	1
-k__Bacteria|p__Cyanobacteria|o__Chroococcales	1
-k__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae	1
-k__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae|g__Chondrocystis	1
-k__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae|g__Chondrocystis|s__Chondrocystis_sp._NIES-4102	1
-k__Bacteria|p__Proteobacteria	18
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	14
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales	6
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae	2
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter_sp._RHBSTW-00599	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae	2
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Erwinia	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Erwinia|s__Candidatus_Erwinia_haradaeae	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Buchnera	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Buchnera|s__Buchnera_aphidicola	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_aquatilis	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus|s__Photorhabdus_asymbiotica	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales	5
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae	5
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella	5
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella|s__Francisella_halioticida	5
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella|s__endosymbiont_of_Sipalinus_gigas	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_azureus	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	1
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_sp._oral_taxon_513	1
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria	2
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales	1
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae	1
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus	1
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-k__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_multivorum	1
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-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae	1
-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga	1
-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga|s__Flammeovirga_kamogawensis	1
-k__Bacteria|p__Fusobacteria	2
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia	2
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales	2
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae	2
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	2
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_nucleatum	1
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-k__Bacteria|p__Spirochaetes	1
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-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales	1
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae	1
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira	1
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira_hyodysenteriae	1
-k__Archaea	2
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-k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae	1
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-k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri	1
-k__Archaea|p__Thaumarchaeota	1
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-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae	1
-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus	1
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+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus	1
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus|s__Photorhabdus_asymbiotica	1
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales	5
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae	5
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella	5
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella|s__Francisella_halioticida	5
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella	1
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella|s__endosymbiont_of_Sipalinus_gigas	1
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales	1
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae	1
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio	1
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+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales	1
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+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_sp._oral_taxon_513	1
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria	2
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+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus	1
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus|s__Cupriavidus_basilensis	1
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+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|g__Candidatus_Kinetoplastibacterium|s__Candidatus_Kinetoplastibacterium_crithidii	1
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria	2
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+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae	2
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	2
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_hepaticus	2
+d__Bacteria|p__Bacteroidetes	7
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia	3
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+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium	1
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium|s__Blattabacterium_cuenoti	1
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae	1
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Olleya	1
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+d__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales	2
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+d__Archaea	2
+d__Archaea|p__Euryarchaeota	1
+d__Archaea|p__Euryarchaeota|c__Methanomicrobia	1
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+d__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri	1
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+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus	1
+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus|s__Candidatus_Nitrosocosmicus_franklandus	1
diff -r 78b69342c280 -r 7337f9722ad7 test-data/mpa_output_intermediate.tabular
--- a/test-data/mpa_output_intermediate.tabular	Fri Nov 22 09:27:53 2024 +0000
+++ b/test-data/mpa_output_intermediate.tabular	Tue Aug 05 12:50:14 2025 +0000
@@ -1,298 +1,298 @@
 x__cellular_organisms	836
-x__cellular_organisms|k__Eukaryota	756
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta	747
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes|x__Catarrhini	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes|x__Catarrhini|x__Hominoidea	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes|x__Catarrhini|x__Hominoidea|f__Hominidae	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes|x__Catarrhini|x__Hominoidea|f__Hominidae|x__Homininae	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes|x__Catarrhini|x__Hominoidea|f__Hominidae|x__Homininae|g__Homo	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata|x__Vertebrata|x__Gnathostomata|x__Teleostomi|x__Euteleostomi|x__Sarcopterygii|x__Dipnotetrapodomorpha|x__Tetrapoda|x__Amniota|c__Mammalia|x__Theria|x__Eutheria|x__Boreoeutheria|x__Euarchontoglires|o__Primates|x__Haplorrhini|x__Simiiformes|x__Catarrhini|x__Hominoidea|f__Hominidae|x__Homininae|g__Homo|s__Homo_sapiens	402
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi	342
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya	342
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-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina	336
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes	336
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales	336
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae	333
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces	329
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae	293
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae|x__Saccharomyces_cerevisiae_S288C	293
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_paradoxus	15
-x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Fungi|x__Dikarya|p__Ascomycota|x__saccharomyceta|x__Saccharomycotina|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_eubayanus	10
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-x__cellular_organisms|k__Bacteria|x__Terrabacteria_group|x__Cyanobacteria/Melainabacteria_group	1
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-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|x__Gammaproteobacteria_incertae_sedis	1
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|x__Gammaproteobacteria_incertae_sedis|g__Candidatus_Nardonella	1
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-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae	1
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-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	1
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-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria	2
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales	1
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae	1
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus	1
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-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|x__Betaproteobacteria_incertae_sedis	1
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|x__Betaproteobacteria_incertae_sedis|g__Candidatus_Kinetoplastibacterium	1
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|x__Betaproteobacteria_incertae_sedis|g__Candidatus_Kinetoplastibacterium|s__Candidatus_Kinetoplastibacterium_crithidii	1
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|x__delta/epsilon_subdivisions	2
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|x__delta/epsilon_subdivisions|c__Epsilonproteobacteria	2
-x__cellular_organisms|k__Bacteria|p__Proteobacteria|x__delta/epsilon_subdivisions|c__Epsilonproteobacteria|o__Campylobacterales	2
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-x__cellular_organisms|k__Bacteria|p__Proteobacteria|x__delta/epsilon_subdivisions|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	2
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-x__cellular_organisms|k__Bacteria|x__FCB_group	7
-x__cellular_organisms|k__Bacteria|x__FCB_group|x__Bacteroidetes/Chlorobi_group	7
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-x__cellular_organisms|k__Bacteria|p__Spirochaetes	1
-x__cellular_organisms|k__Bacteria|p__Spirochaetes|c__Spirochaetia	1
-x__cellular_organisms|k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales	1
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+x__cellular_organisms|d__Archaea|x__TACK_group|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae	1
+x__cellular_organisms|d__Archaea|x__TACK_group|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus	1
+x__cellular_organisms|d__Archaea|x__TACK_group|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus|s__Candidatus_Nitrosocosmicus_franklandus	1
diff -r 78b69342c280 -r 7337f9722ad7 test-data/mpa_output_percentages.tabular
--- a/test-data/mpa_output_percentages.tabular	Fri Nov 22 09:27:53 2024 +0000
+++ b/test-data/mpa_output_percentages.tabular	Tue Aug 05 12:50:14 2025 +0000
@@ -1,215 +1,215 @@
-k__Eukaryota	56.0
-k__Eukaryota|k__Metazoa	29.78
-k__Eukaryota|k__Metazoa|p__Chordata	29.78
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia	29.78
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates	29.78
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae	29.78
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo	29.78
-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo|s__Homo_sapiens	29.78
-k__Eukaryota|k__Fungi	25.33
-k__Eukaryota|k__Fungi|p__Ascomycota	25.26
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes	24.89
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales	24.89
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae	24.67
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces	24.37
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae	21.7
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_paradoxus	1.11
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_eubayanus	0.74
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces|s__Kluyveromyces_marxianus	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella|s__Sugiyamaella_lignohabitans	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida|s__Candida_dubliniensis	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes	0.22
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora|s__Neurospora_crassa	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia|s__Pyricularia_pennisetigena	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus|s__Aspergillus_luchuensis	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces	0.07
-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces|s__Schizosaccharomyces_pombe	0.07
-k__Eukaryota|p__Apicomplexa	0.37
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida	0.3
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida	0.3
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae	0.3
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium	0.3
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_vivax	0.07
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_malariae	0.07
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_coatneyi	0.07
-k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_chabaudi	0.07
-k__Eukaryota|p__Apicomplexa|c__Conoidasida	0.07
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida	0.07
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae	0.07
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae|g__Cryptosporidium	0.07
-k__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae|g__Cryptosporidium|s__Cryptosporidium_parvum	0.07
-k__Eukaryota|p__Evosea	0.07
-k__Eukaryota|p__Evosea|c__Eumycetozoa	0.07
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales	0.07
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae	0.07
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae|g__Dictyostelium	0.07
-k__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae|g__Dictyostelium|s__Dictyostelium_discoideum	0.07
-k__Bacteria	3.78
-k__Bacteria|p__Firmicutes	1.26
-k__Bacteria|p__Firmicutes|c__Clostridia	0.67
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales	0.67
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae	0.3
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium	0.3
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_sp._MF28	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_pasteurianum	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_carboxidivorans	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae	0.15
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Clostridioides	0.15
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides_difficile	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnoclostridium	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnoclostridium|s__[Clostridium]_hylemonae	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Monoglobus	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Monoglobus|s__Monoglobus_pectinilyticus	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis|g__Mogibacterium	0.07
-k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis|g__Mogibacterium|s__Mogibacterium_pumilum	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli	0.59
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales	0.44
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae	0.22
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus	0.15
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Halobacillus	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Halobacillus|s__Halobacillus_litoralis	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae	0.15
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_saccharolyticus	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Jeotgalicoccus	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Jeotgalicoccus|s__Jeotgalicoccus_saudimassiliensis	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae|g__Paenibacillus	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae|g__Paenibacillus|s__Paenibacillus_azoreducens	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	0.15
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus_lactis	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Weissella	0.07
-k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Weissella|s__Weissella_paramesenteroides	0.07
-k__Bacteria|p__Tenericutes	0.15
-k__Bacteria|p__Tenericutes|c__Mollicutes	0.07
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales	0.07
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae	0.07
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae|g__Mycoplasma	0.07
-k__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae|g__Mycoplasma|s__Mycoplasma_sp._Ms02	0.07
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales	0.07
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae	0.07
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma	0.07
-k__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma_phocicerebrale	0.07
-k__Bacteria|p__Cyanobacteria	0.07
-k__Bacteria|p__Cyanobacteria|o__Chroococcales	0.07
-k__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae	0.07
-k__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae|g__Chondrocystis	0.07
-k__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae|g__Chondrocystis|s__Chondrocystis_sp._NIES-4102	0.07
-k__Bacteria|p__Proteobacteria	1.33
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	1.04
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales	0.44
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae	0.15
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter_sp._RHBSTW-00599	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae	0.15
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Erwinia	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Erwinia|s__Candidatus_Erwinia_haradaeae	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Buchnera	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Buchnera|s__Buchnera_aphidicola	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_aquatilis	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus|s__Photorhabdus_asymbiotica	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales	0.37
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae	0.37
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella	0.37
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella|s__Francisella_halioticida	0.37
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella|s__endosymbiont_of_Sipalinus_gigas	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_azureus	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	0.07
-k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_sp._oral_taxon_513	0.07
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria	0.15
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales	0.07
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae	0.07
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus	0.07
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus|s__Cupriavidus_basilensis	0.07
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|g__Candidatus_Kinetoplastibacterium	0.07
-k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|g__Candidatus_Kinetoplastibacterium|s__Candidatus_Kinetoplastibacterium_crithidii	0.07
-k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria	0.15
-k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales	0.15
-k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae	0.15
-k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	0.15
-k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_hepaticus	0.15
-k__Bacteria|p__Bacteroidetes	0.52
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia	0.22
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales	0.22
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium|s__Blattabacterium_cuenoti	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Olleya	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium	0.07
-k__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium|s__Chryseobacterium_sp._DH-B6	0.07
-k__Bacteria|p__Bacteroidetes|c__Bacteroidia	0.15
-k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales	0.15
-k__Bacteria|p__Bacteroidetes|c__Sphingobacteriia	0.07
-k__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales	0.07
-k__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae	0.07
-k__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium	0.07
-k__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_multivorum	0.07
-k__Bacteria|p__Bacteroidetes|c__Cytophagia	0.07
-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales	0.07
-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae	0.07
-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga	0.07
-k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga|s__Flammeovirga_kamogawensis	0.07
-k__Bacteria|p__Fusobacteria	0.15
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia	0.15
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales	0.15
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae	0.15
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	0.15
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_nucleatum	0.07
-k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_hwasookii	0.07
-k__Bacteria|p__Spirochaetes	0.07
-k__Bacteria|p__Spirochaetes|c__Spirochaetia	0.07
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales	0.07
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae	0.07
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira	0.07
-k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira_hyodysenteriae	0.07
-k__Archaea	0.15
-k__Archaea|p__Euryarchaeota	0.07
-k__Archaea|p__Euryarchaeota|c__Methanomicrobia	0.07
-k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales	0.07
-k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae	0.07
-k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina	0.07
-k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri	0.07
-k__Archaea|p__Thaumarchaeota	0.07
-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria	0.07
-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales	0.07
-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae	0.07
-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus	0.07
-k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus|s__Candidatus_Nitrosocosmicus_franklandus	0.07
+d__Eukaryota	56.0
+d__Eukaryota|k__Metazoa	29.78
+d__Eukaryota|k__Metazoa|p__Chordata	29.78
+d__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia	29.78
+d__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates	29.78
+d__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae	29.78
+d__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo	29.78
+d__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo|s__Homo_sapiens	29.78
+d__Eukaryota|k__Fungi	25.33
+d__Eukaryota|k__Fungi|p__Ascomycota	25.26
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes	24.89
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales	24.89
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae	24.67
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces	24.37
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae	21.7
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_paradoxus	1.11
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_eubayanus	0.74
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces|s__Kluyveromyces_marxianus	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella|s__Sugiyamaella_lignohabitans	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida|s__Candida_dubliniensis	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes	0.22
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora|s__Neurospora_crassa	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia|s__Pyricularia_pennisetigena	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus|s__Aspergillus_luchuensis	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces	0.07
+d__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces|s__Schizosaccharomyces_pombe	0.07
+d__Eukaryota|p__Apicomplexa	0.37
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida	0.3
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida	0.3
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae	0.3
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium	0.3
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_vivax	0.07
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_malariae	0.07
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_coatneyi	0.07
+d__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_chabaudi	0.07
+d__Eukaryota|p__Apicomplexa|c__Conoidasida	0.07
+d__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida	0.07
+d__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae	0.07
+d__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae|g__Cryptosporidium	0.07
+d__Eukaryota|p__Apicomplexa|c__Conoidasida|o__Eucoccidiorida|f__Cryptosporidiidae|g__Cryptosporidium|s__Cryptosporidium_parvum	0.07
+d__Eukaryota|p__Evosea	0.07
+d__Eukaryota|p__Evosea|c__Eumycetozoa	0.07
+d__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales	0.07
+d__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae	0.07
+d__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae|g__Dictyostelium	0.07
+d__Eukaryota|p__Evosea|c__Eumycetozoa|o__Dictyosteliales|f__Dictyosteliaceae|g__Dictyostelium|s__Dictyostelium_discoideum	0.07
+d__Bacteria	3.78
+d__Bacteria|p__Firmicutes	1.26
+d__Bacteria|p__Firmicutes|c__Clostridia	0.67
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales	0.67
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae	0.3
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium	0.3
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_sp._MF28	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_pasteurianum	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_carboxidivorans	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae	0.15
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Clostridioides	0.15
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides_difficile	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnoclostridium	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Lachnospiraceae|g__Lachnoclostridium|s__[Clostridium]_hylemonae	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Monoglobus	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Monoglobus|s__Monoglobus_pectinilyticus	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis|g__Mogibacterium	0.07
+d__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_Family_XIII._Incertae_Sedis|g__Mogibacterium|s__Mogibacterium_pumilum	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli	0.59
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales	0.44
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae	0.22
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus	0.15
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Halobacillus	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Halobacillus|s__Halobacillus_litoralis	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae	0.15
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_saccharolyticus	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Jeotgalicoccus	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Jeotgalicoccus|s__Jeotgalicoccus_saudimassiliensis	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae|g__Paenibacillus	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Paenibacillaceae|g__Paenibacillus|s__Paenibacillus_azoreducens	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	0.15
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus_lactis	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Weissella	0.07
+d__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Weissella|s__Weissella_paramesenteroides	0.07
+d__Bacteria|p__Tenericutes	0.15
+d__Bacteria|p__Tenericutes|c__Mollicutes	0.07
+d__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales	0.07
+d__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae	0.07
+d__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae|g__Mycoplasma	0.07
+d__Bacteria|p__Tenericutes|c__Mollicutes|o__Mycoplasmatales|f__Mycoplasmataceae|g__Mycoplasma|s__Mycoplasma_sp._Ms02	0.07
+d__Bacteria|p__Tenericutes|o__Mycoplasmoidales	0.07
+d__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae	0.07
+d__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma	0.07
+d__Bacteria|p__Tenericutes|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma_phocicerebrale	0.07
+d__Bacteria|p__Cyanobacteria	0.07
+d__Bacteria|p__Cyanobacteria|o__Chroococcales	0.07
+d__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae	0.07
+d__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae|g__Chondrocystis	0.07
+d__Bacteria|p__Cyanobacteria|o__Chroococcales|f__Chroococcaceae|g__Chondrocystis|s__Chondrocystis_sp._NIES-4102	0.07
+d__Bacteria|p__Proteobacteria	1.33
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	1.04
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales	0.44
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae	0.15
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter_sp._RHBSTW-00599	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae	0.15
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Erwinia	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Erwinia|s__Candidatus_Erwinia_haradaeae	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Buchnera	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Erwiniaceae|g__Buchnera|s__Buchnera_aphidicola	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Yersiniaceae|g__Rahnella|s__Rahnella_aquatilis	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Morganellaceae|g__Photorhabdus|s__Photorhabdus_asymbiotica	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales	0.37
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae	0.37
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella	0.37
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Thiotrichales|f__Francisellaceae|g__Francisella|s__Francisella_halioticida	0.37
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|g__Candidatus_Nardonella|s__endosymbiont_of_Sipalinus_gigas	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_azureus	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	0.07
+d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_sp._oral_taxon_513	0.07
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria	0.15
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales	0.07
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae	0.07
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus	0.07
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Cupriavidus|s__Cupriavidus_basilensis	0.07
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|g__Candidatus_Kinetoplastibacterium	0.07
+d__Bacteria|p__Proteobacteria|c__Betaproteobacteria|g__Candidatus_Kinetoplastibacterium|s__Candidatus_Kinetoplastibacterium_crithidii	0.07
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria	0.15
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales	0.15
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae	0.15
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	0.15
+d__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_hepaticus	0.15
+d__Bacteria|p__Bacteroidetes	0.52
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia	0.22
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales	0.22
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium|s__Blattabacterium_cuenoti	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Olleya	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium	0.07
+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium|s__Chryseobacterium_sp._DH-B6	0.07
+d__Bacteria|p__Bacteroidetes|c__Bacteroidia	0.15
+d__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales	0.15
+d__Bacteria|p__Bacteroidetes|c__Sphingobacteriia	0.07
+d__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales	0.07
+d__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae	0.07
+d__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium	0.07
+d__Bacteria|p__Bacteroidetes|c__Sphingobacteriia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_multivorum	0.07
+d__Bacteria|p__Bacteroidetes|c__Cytophagia	0.07
+d__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales	0.07
+d__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae	0.07
+d__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga	0.07
+d__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga|s__Flammeovirga_kamogawensis	0.07
+d__Bacteria|p__Fusobacteria	0.15
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+d__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales	0.15
+d__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae	0.15
+d__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	0.15
+d__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_nucleatum	0.07
+d__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_hwasookii	0.07
+d__Bacteria|p__Spirochaetes	0.07
+d__Bacteria|p__Spirochaetes|c__Spirochaetia	0.07
+d__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales	0.07
+d__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae	0.07
+d__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira	0.07
+d__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira_hyodysenteriae	0.07
+d__Archaea	0.15
+d__Archaea|p__Euryarchaeota	0.07
+d__Archaea|p__Euryarchaeota|c__Methanomicrobia	0.07
+d__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales	0.07
+d__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae	0.07
+d__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina	0.07
+d__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri	0.07
+d__Archaea|p__Thaumarchaeota	0.07
+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria	0.07
+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales	0.07
+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae	0.07
+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus	0.07
+d__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus|s__Candidatus_Nitrosocosmicus_franklandus	0.07
diff -r 78b69342c280 -r 7337f9722ad7 test-data/output.tabular
--- a/test-data/output.tabular	Fri Nov 22 09:27:53 2024 +0000
+++ b/test-data/output.tabular	Tue Aug 05 12:50:14 2025 +0000
@@ -211,3 +211,4 @@
 0	k__Archaea	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales
 0	k__Archaea	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales	f__Nitrososphaeraceae
 0	k__Archaea	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales	f__Nitrososphaeraceae	g__Candidatus_Nitrosocosmicus
+1	k__Archaea	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales	f__Nitrososphaeraceae	g__Candidatus_Nitrosocosmicus	s__Candidatus_Nitrosocosmicus_franklandus