Mercurial > repos > iuc > krakentools_alpha_diversity
changeset 3:9d0330e23bfd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit 92c58a65005708fbd56b27b86969c01a1258ddb9
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/kraken1.report Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,18 @@ + 6.79 38 38 U 0 unclassified + 93.21 522 0 - 1 root + 93.21 522 0 D 10239 Viruses + 88.75 497 0 - 35237 dsDNA viruses, no RNA stage + 88.75 497 0 O 548681 Herpesvirales + 88.75 497 0 F 10292 Herpesviridae + 88.75 497 0 - 10293 Alphaherpesvirinae + 88.75 497 0 G 180255 Iltovirus + 88.75 497 497 S 10386 Gallid herpesvirus 1 + 4.46 25 0 - 439488 ssRNA viruses + 4.46 25 0 - 35301 ssRNA negative-strand viruses + 4.46 25 0 O 11157 Mononegavirales + 4.46 25 0 F 11158 Paramyxoviridae + 4.46 25 0 G 260963 Avulavirus + 3.57 20 0 - 336096 unclassified Avulavirus + 3.57 20 20 S 204987 Goose paramyxovirus SF02 + 0.89 5 0 S 11176 Newcastle disease virus + 0.89 5 5 - 139270 Newcastle disease virus B1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/kraken1.results Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,560 @@ +U C_II_XVIIIb-101 0 301 0:120 A:31 0:120 +U C_II_XVIIIb-99 0 301 0:120 A:31 0:120 +C C_II_XVIIIb-97 204987 301 0:120 A:31 0:72 204987:2 0:46 +C C_II_XVIIIb-95 204987 301 0:87 204987:24 0:9 A:31 0:120 +U C_II_XVIIIb-93 0 301 0:120 A:31 0:120 +C C_II_XVIIIb-91 204987 301 0:80 204987:2 0:38 A:31 0:120 +C C_II_XVIIIb-89 204987 301 0:120 A:31 0:60 204987:2 0:58 +C C_II_XVIIIb-87 139270 301 0:58 139270:9 0:53 A:31 0:120 +U C_II_XVIIIb-85 0 301 0:120 A:31 0:120 +U C_II_XVIIIb-83 0 301 0:120 A:31 0:120 +U C_II_XVIIIb-81 0 301 0:120 A:31 0:120 +U C_II_XVIIIb-79 0 301 0:120 A:31 0:120 +U C_II_XVIIIb-77 0 301 0:120 A:31 0:120 +C C_II_XVIIIb-75 204987 301 0:120 A:31 0:54 204987:18 0:48 +U C_II_XVIIIb-73 0 301 0:120 A:31 0:120 +U C_II_XVIIIb-71 0 301 0:120 A:31 0:120 +C C_II_XVIIIb-69 204987 301 0:26 204987:2 0:92 A:31 0:120 +U C_II_XVIIIb-67 0 301 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/kraken2.report Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,73 @@ + 4.29 24 24 U 0 unclassified + 95.71 536 0 R 1 root + 95.00 532 0 D 10239 Viruses + 88.75 497 0 D1 2731341 Duplodnaviria + 88.75 497 0 D2 2731360 Heunggongvirae + 88.75 497 0 P 2731361 Peploviricota + 88.75 497 0 C 2731363 Herviviricetes + 88.75 497 0 O 548681 Herpesvirales + 88.75 497 0 F 10292 Herpesviridae + 88.75 497 0 F1 10293 Alphaherpesvirinae + 88.75 497 0 G 180255 Iltovirus + 88.75 497 497 S 10386 Gallid alphaherpesvirus 1 + 6.25 35 0 D1 2559587 Riboviria + 6.25 35 0 K 2732396 Orthornavirae + 6.25 35 0 P 2497569 Negarnaviricota + 6.25 35 0 P1 2497570 Haploviricotina + 6.25 35 0 C 2497574 Monjiviricetes + 6.25 35 0 O 11157 Mononegavirales + 6.25 35 0 F 11158 Paramyxoviridae + 6.25 35 12 G 260963 Avulavirus + 2.68 15 0 G1 336096 unclassified Avulavirus + 2.68 15 15 S 204987 Goose paramyxovirus SF02 + 1.25 7 7 S 11176 Avian avulavirus 1 + 0.18 1 1 S 1305716 Avian avulavirus 12 + 0.71 4 0 R1 131567 cellular organisms + 0.36 2 0 D 2 Bacteria + 0.36 2 0 P 1224 Proteobacteria + 0.36 2 0 C 1236 Gammaproteobacteria + 0.36 2 0 O 72274 Pseudomonadales + 0.36 2 0 F 468 Moraxellaceae + 0.36 2 0 G 469 Acinetobacter + 0.36 2 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex + 0.36 2 2 S 470 Acinetobacter baumannii + 0.36 2 0 D 2759 Eukaryota + 0.18 1 0 D1 33154 Opisthokonta + 0.18 1 0 K 33208 Metazoa + 0.18 1 0 K1 6072 Eumetazoa + 0.18 1 0 K2 33213 Bilateria + 0.18 1 0 K3 33511 Deuterostomia + 0.18 1 0 P 7711 Chordata + 0.18 1 0 P1 89593 Craniata + 0.18 1 0 P2 7742 Vertebrata + 0.18 1 0 P3 7776 Gnathostomata + 0.18 1 0 P4 117570 Teleostomi + 0.18 1 0 P5 117571 Euteleostomi + 0.18 1 0 P6 8287 Sarcopterygii + 0.18 1 0 P7 1338369 Dipnotetrapodomorpha + 0.18 1 0 P8 32523 Tetrapoda + 0.18 1 0 P9 32524 Amniota + 0.18 1 0 C 40674 Mammalia + 0.18 1 0 C1 32525 Theria + 0.18 1 0 C2 9347 Eutheria + 0.18 1 0 C3 1437010 Boreoeutheria + 0.18 1 0 C4 314146 Euarchontoglires + 0.18 1 0 O 9443 Primates + 0.18 1 0 O1 376913 Haplorrhini + 0.18 1 0 O2 314293 Simiiformes + 0.18 1 0 O3 9526 Catarrhini + 0.18 1 0 O4 314295 Hominoidea + 0.18 1 0 F 9604 Hominidae + 0.18 1 0 F1 207598 Homininae + 0.18 1 0 G 9605 Homo + 0.18 1 1 S 9606 Homo sapiens + 0.18 1 0 D1 2698737 Sar + 0.18 1 0 D2 33630 Alveolata + 0.18 1 0 P 5794 Apicomplexa + 0.18 1 0 C 422676 Aconoidasida + 0.18 1 0 O 5819 Haemosporida + 0.18 1 0 F 1639119 Plasmodiidae + 0.18 1 0 G 5820 Plasmodium + 0.18 1 0 G1 418103 Plasmodium (Plasmodium) + 0.18 1 0 S 5850 Plasmodium knowlesi + 0.18 1 1 S1 5851 Plasmodium knowlesi strain H
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/kraken2.results Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,560 @@ +C C_II_XVIIIb-101 5851 150|150 0:116 |:| 0:17 5851:5 0:94 +C C_II_XVIIIb-99 260963 150|150 0:40 260963:5 0:71 |:| 0:116 +C C_II_XVIIIb-97 260963 150|150 0:116 |:| 0:75 260963:1 0:40 +C C_II_XVIIIb-95 204987 150|150 0:63 260963:3 0:21 204987:20 0:9 |:| 0:116 +C C_II_XVIIIb-93 260963 150|150 0:116 |:| 0:82 260963:3 0:31 +C C_II_XVIIIb-91 204987 150|150 0:65 260963:2 0:49 |:| 0:18 204987:2 0:96 +C C_II_XVIIIb-89 204987 150|150 0:11 204987:5 0:38 260963:3 0:59 |:| 0:56 260963:5 0:55 +C C_II_XVIIIb-87 260963 150|150 0:23 260963:4 0:58 260963:2 0:1 260963:5 0:23 |:| 0:116 +C C_II_XVIIIb-85 260963 150|150 0:42 260963:3 0:3 260963:5 0:1 260963:5 0:57 |:| 0:116 +U C_II_XVIIIb-83 0 150|150 0:116 |:| 0:116 +U C_II_XVIIIb-81 0 150|150 0:116 |:| 0:116 +U C_II_XVIIIb-79 0 150|150 0:116 |:| 0:116 +U C_II_XVIIIb-77 0 150|150 0:116 |:| 0:116 +C 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0:12 10386:2 0:1 10386:93 |:| 0:20 10386:44 0:9 10386:1 0:7 10386:7 0:10 10386:18 +C HQ630064-19 10386 150|150 0:32 10386:84 |:| 0:19 10386:97 +C HQ630064-17 10386 150|150 0:28 10386:88 |:| 0:23 10386:15 0:5 10386:3 0:13 10386:5 0:5 10386:47 +C HQ630064-15 10386 150|150 0:43 10386:1 0:12 10386:60 |:| 0:6 10386:3 0:12 10386:21 0:7 10386:1 0:15 10386:1 0:3 10386:6 0:5 10386:36 +C HQ630064-13 10386 150|150 0:25 10386:1 0:1 10386:89 |:| 0:17 10386:1 0:1 10386:5 0:1 10386:1 0:1 10386:1 0:3 10386:85 +U HQ630064-11 0 150|150 0:116 |:| 0:116 +C HQ630064-9 10386 150|150 0:19 10386:97 |:| 0:15 10386:3 0:5 10386:1 0:1 10386:2 0:16 10386:11 0:9 10386:53 +C HQ630064-7 10386 150|150 0:15 10386:10 0:2 10386:89 |:| 0:35 10386:3 0:23 10386:55 +C HQ630064-5 10386 150|150 0:1 10386:1 0:5 10386:1 0:6 10386:48 0:29 10386:7 0:1 10386:7 0:7 10386:3 |:| 0:13 10386:25 0:5 10386:5 0:7 10386:7 0:1 10386:7 0:3 10386:2 0:28 10386:9 0:3 10386:1 +U HQ630064-3 0 150|150 0:116 |:| 0:116 +C HQ630064-1 10386 150|150 0:35 10386:5 0:5 10386:28 0:4 10386:3 0:36 |:| 0:116
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/krakenU.report Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,1305 @@ +# KrakenUniq v0.5.8 DATE:2021-09-21T05:28:21Z DB:./db1 ./db2 ./db3 ./db4 ./db5 ./db6 ./db7 ./db8 ./db9 DB_SIZE:43487608 WD:/tmp/nxf.LS2KtRM0fv +# CL:perl /opt/conda/envs/nf/bin/krakenuniq --db db1 --db db2 --db db3 --db db4 --db db5 --db db6 --db db7 --db db8 --db db9 --threads 64 --report-file lowfilt.report.pre --output lowfilt.results --paired lowfilt.qfilt.R1_val_1.rmspikein.fq lowfilt.qfilt.R2_val_2.rmspikein.fq + +% reads taxReads kmers dup cov taxID rank taxName +2.18 1681 1681 12617084 1.2 NA 0 no rank unclassified +97.82 75426 277 1886797 1.23 7.482e-05 1 no rank root +95.62 73730 29 1742828 1.21 7.188e-05 131567 no rank cellular organisms +93.26 71908 380 1704354 1.21 9.69e-05 2 superkingdom Bacteria +44.5 34310 59 797434 1.21 0.0001228 1783272 clade Terrabacteria group +29.93 23076 82 557233 1.2 0.0002134 1239 phylum Firmicutes +20.77 16015 73 379200 1.22 0.0003627 91061 class Bacilli +12.81 9880 45 253369 1.19 0.0003098 1385 order Bacillales +4.103 3164 10 102496 1.16 0.00027 186817 family Bacillaceae +4.088 3152 963 100677 1.16 0.001024 1386 genus Bacillus +2.521 1944 1944 46683 1.13 0.07898 1963032 species Bacillus intestinalis +0.284 219 150 4091 1.26 0.0002188 86661 species group Bacillus cereus group +0.05447 42 42 1083 1.29 0.001994 2026186 species Bacillus paranthracis +0.009078 7 7 226 1.29 0.0004816 2026188 species Bacillus tropicus +0.007781 6 6 208 1.21 0.00036 2026190 species Bacillus mobilis +0.005188 4 4 170 1.21 4.36e-05 1396 species Bacillus cereus +0.003891 3 3 75 1.29 0.0001177 2026189 species Bacillus albus +0.002594 2 2 56 1.16 0.0001006 2026193 species Bacillus nitratireducens +0.002594 2 2 62 1.27 0.0002833 1392 species Bacillus anthracis +0.001297 1 1 44 1.27 0.0001063 2026191 species Bacillus luti +0.001297 1 1 66 1.26 8.275e-05 1890302 species Bacillus wiedmannii +0.001297 1 1 70 1.19 5.253e-05 1428 species Bacillus thuringiensis +0.01816 14 0 1824 1.22 5.778e-05 185979 no rank unclassified Bacillus (in: Bacteria) +0.01167 9 9 1141 1.25 0.002064 2597270 species Bacillus sp. P16(2019) +0.006484 5 5 681 1.19 4.507e-05 1409 species Bacillus sp. (in: Bacteria) +0.01038 8 6 3457 1.41 0.0003944 653685 species group Bacillus subtilis group +0.002594 2 2 1721 1.15 0.002671 483913 species Bacillus inaquosorum +0.002594 2 2 119 1.18 0.0002753 230954 species Bacillus thermozeamaize +0.001297 1 1 179 1.23 0.0004264 408580 species Bacillus coahuilensis +0.001297 1 1 61 1.36 0.000156 2039284 species Bacillus fungorum +0.001297 1 0 42 1.17 4.106e-06 84406 genus Virgibacillus +0.001297 1 1 37 1.19 6.655e-05 1638645 species Virgibacillus kapii +0.001297 1 0 5 1 1.141e-06 704093 genus Anaerobacillus +0.001297 1 0 2 1 8.059e-07 2625356 no rank unclassified Anaerobacillus +0.001297 1 1 2 1 8.059e-07 1872506 species Anaerobacillus sp. +3.84 2961 27 58221 1.28 0.001726 90964 family Staphylococcaceae +3.803 2932 321 56780 1.27 0.002658 1279 genus Staphylococcus +1.935 1492 1492 25704 1.26 0.07286 1280 species Staphylococcus aureus +1.414 1090 1090 20177 1.19 0.06293 1282 species Staphylococcus epidermidis +0.01038 8 8 231 1.31 0.0002607 1283 species Staphylococcus haemolyticus +0.007781 6 6 92 1.54 0.0002367 29388 species Staphylococcus capitis +0.005188 4 4 121 1.34 0.0001435 246432 species Staphylococcus equorum +0.003891 3 3 197 1.42 0.0003064 29385 species Staphylococcus saprophyticus +0.002594 2 0 191 1.33 0.0002059 2815305 species group Staphylococcus intermedius group +0.002594 2 2 191 1.33 0.0005719 1986155 species Staphylococcus cornubiensis +0.001297 1 1 4 2.25 1.273e-05 985762 species Staphylococcus agnetis +0.001297 1 1 2 1 3.537e-06 45972 species Staphylococcus pasteuri +0.001297 1 1 207 1.28 0.0006984 33028 species Staphylococcus saccharolyticus +0.001297 1 1 65 1.26 0.0002577 2282419 species Staphylococcus pseudoxylosus +0.001297 1 1 53 1.28 7.542e-05 1293 species Staphylococcus gallinarum +0.001297 1 1 20 1.2 6.233e-05 1281 species Staphylococcus carnosus +0.001297 1 0 108 1.44 3.095e-05 69965 genus Macrococcus +0.001297 1 0 60 1.48 0.0001285 2619255 no rank unclassified Macrococcus +0.001297 1 1 60 1.48 0.0001285 1871621 species Macrococcus sp. +0.001297 1 0 52 1.08 3.132e-05 2803850 genus Mammaliicoccus +0.001297 1 1 30 1.13 4.953e-05 42858 species Mammaliicoccus lentus +2.803 2161 0 53804 1.2 0.00458 186820 family Listeriaceae +2.803 2161 430 53804 1.2 0.004844 1637 genus Listeria +2.187 1686 1686 32642 1.2 0.03524 1639 species Listeria monocytogenes +0.05447 42 0 5653 1.21 0.002214 2642072 no rank unclassified Listeria +0.05447 42 42 5653 1.21 0.002214 1960103 species Listeria sp. +0.002594 2 2 10 1.2 2.441e-05 1640 species Listeria seeligeri +0.001297 1 1 7 1.14 2.225e-05 1642 species Listeria innocua +1.984 1530 59 32783 1.18 0.0001172 186822 family Paenibacillaceae +1.899 1464 3 30923 1.17 0.03542 76632 genus Thermobacillus +1.895 1461 1461 30364 1.17 0.06785 377615 species Thermobacillus composti +0.005188 4 0 113 1.54 0.0003045 2767206 genus Candidatus Reconcilibacillus +0.005188 4 4 113 1.54 0.0003045 1906605 species Candidatus Reconcilbacillus cellulovorans +0.002594 2 0 107 1.29 5.395e-06 55080 genus Brevibacillus +0.001297 1 1 29 1 1.762e-05 54915 species Brevibacillus reuszeri +0.001297 1 0 77 1.4 2.428e-05 2684853 no rank unclassified Brevibacillus +0.001297 1 1 77 1.4 3.358e-05 1882945 species Brevibacillus sp. +0.001297 1 0 211 1.2 9.438e-07 44249 genus Paenibacillus +0.001297 1 1 14 1.36 1.986e-05 1737354 species Paenibacillus radicis +0.02334 18 0 749 1.44 4.451e-05 539002 no rank Bacillales incertae sedis +0.02334 18 0 616 1.44 0.000221 539738 no rank Bacillales Family XI. Incertae Sedis +0.02334 18 0 616 1.44 0.000221 1378 genus Gemella +0.02334 18 0 611 1.44 0.0006785 2624949 no rank unclassified Gemella +0.02334 18 18 611 1.44 0.0006785 1966354 species Gemella sp. +0.001297 1 0 97 1.22 1.966e-06 186818 family Planococcaceae +0.001297 1 0 47 1.23 0.0001369 194985 no rank unclassified Planococcaceae +0.001297 1 1 47 1.23 0.0001369 1953061 species Planococcaceae bacterium UBA3370 +7.862 6062 54 119409 1.29 0.0005415 186826 order Lactobacillales +2.788 2150 107 41437 1.35 0.0004208 33958 family Lactobacillaceae +2.624 2023 21 37777 1.33 0.005332 2742598 genus Limosilactobacillus +2.593 1999 1999 36319 1.34 0.1122 1613 species Limosilactobacillus fermentum +0.002594 2 2 577 1.27 0.002744 1450649 species Limosilactobacillus gorillae +0.001297 1 1 22 1.5 4.575e-05 97478 species Limosilactobacillus mucosae +0.02334 18 7 485 1.13 4.516e-05 1578 genus Lactobacillus +0.01038 8 8 117 1.08 0.0005589 1596 species Lactobacillus gasseri +0.003891 3 3 81 1.12 0.0003862 2107999 species Lactobacillus paragasseri +0.001297 1 0 59 1.29 1.226e-05 2767887 genus Ligilactobacillus +0.001297 1 0 55 1.29 0.0002153 2767920 no rank unclassified Ligilactobacillus +0.001297 1 1 55 1.29 0.0002153 2767921 species Ligilactobacillus sp. +0.001297 1 0 22 1.14 7.19e-06 1253 genus Pediococcus +0.001297 1 1 2 2 7.326e-06 319653 species Pediococcus ethanolidurans +2.532 1952 8 37717 1.2 0.0009686 81852 family Enterococcaceae +2.513 1938 47 37239 1.19 0.001227 1350 genus Enterococcus +2.446 1886 1886 35200 1.19 0.04042 1351 species Enterococcus faecalis +0.002594 2 2 62 1.31 8.211e-05 53345 species Enterococcus durans +0.001297 1 1 15 1.2 4.257e-05 214095 species Enterococcus canis +0.001297 1 1 31 1.16 9.541e-05 1640685 species Enterococcus massiliensis +0.001297 1 1 51 1.27 6.459e-05 1353 species Enterococcus gallinarum +0.007781 6 0 253 1.11 4.217e-05 2737 genus Vagococcus +0.007781 6 6 208 1.09 0.0005309 2739 species Vagococcus salmoninarum +2.472 1906 3 39563 1.25 0.0006871 1300 family Streptococcaceae +2.467 1902 321 39278 1.24 0.0007851 1301 genus Streptococcus +1.738 1340 1340 21469 1.27 0.09213 1309 species Streptococcus mutans +0.1881 145 145 2955 1.14 0.009257 1311 species Streptococcus agalactiae +0.06874 53 53 1161 1.15 0.005805 1314 species Streptococcus pyogenes +0.02723 21 15 596 1.25 0.0004456 671232 species group Streptococcus anginosus group +0.007781 6 6 316 1.26 0.0009571 1338 species Streptococcus intermedius +0.006484 5 5 182 1.12 0.001166 1111760 species Streptococcus troglodytae +0.005188 4 4 116 1.16 0.0004834 1339 species Streptococcus macacae +0.002594 2 0 176 1.22 2.336e-05 2608887 no rank unclassified Streptococcus +0.002594 2 2 176 1.22 2.336e-05 1306 species Streptococcus sp. +0.002594 2 2 60 1 0.0002295 149016 species Streptococcus urinalis +0.002594 2 2 49 1.16 1.655e-05 1303 species Streptococcus oralis +0.001297 1 1 21 1.29 5.252e-06 28037 species Streptococcus mitis +0.001297 1 1 5 1 1.906e-05 1917441 species Streptococcus ruminantium +0.001297 1 1 19 1.16 0.0001623 150055 species Streptococcus lutetiensis +0.001297 1 1 23 1.13 4.443e-05 1349 species Streptococcus uberis +0.001297 1 1 6 1 2.214e-05 1317 species Streptococcus downei +0.001297 1 0 120 1.26 0.0001309 119603 species group Streptococcus dysgalactiae group +0.001297 1 1 116 1.27 0.0002219 1334 species Streptococcus dysgalactiae +0.001297 1 1 51 1.49 0.000184 1080071 species Streptococcus orisasini +0.001297 1 0 57 1.02 8.309e-06 1357 genus Lactococcus +0.001297 1 1 13 1 2.958e-05 1940789 species Lactococcus petauri +9.041 6971 11 171755 1.15 0.0001335 186801 class Clostridia +9.015 6951 52 171007 1.15 0.0001428 186802 order Eubacteriales +5.058 3900 12 90727 1.17 0.001943 186807 family Peptococcaceae +5.041 3887 149 90117 1.17 0.00749 79206 genus Desulfosporosinus +3.841 2962 2961 63755 1.18 0.1188 885581 species Desulfosporosinus acidiphilus +0.001297 1 1 166 1.49 0.3144 646529 subspecies Desulfosporosinus acidiphilus SJ4 +0.9545 736 736 15090 1.14 0.03799 79209 species Desulfosporosinus meridiei +0.05058 39 0 4163 1.16 0.0005576 2633794 no rank unclassified Desulfosporosinus +0.05058 39 39 4163 1.16 0.0005576 157907 species Desulfosporosinus sp. +0.001297 1 1 467 1.26 0.0008942 476652 species Desulfosporosinus acididurans +0.001297 1 0 65 1.18 1.468e-05 191373 genus Pelotomaculum +0.001297 1 0 45 1.09 1.474e-05 2621639 no rank unclassified Pelotomaculum +0.001297 1 1 36 1.08 8.643e-05 1811696 species Pelotomaculum sp. PtaU1.Bin065 +1.757 1355 12 29314 1.18 0.01134 2867375 family Desulfallaceae +1.742 1343 0 28866 1.18 0.03159 2867376 genus Desulfoscipio +1.742 1343 1343 28857 1.18 0.05589 102134 species Desulfoscipio gibsoniae +1.223 943 1 22343 1.24 0.0001332 31979 family Clostridiaceae +1.218 939 51 22058 1.24 0.0002023 1485 genus Clostridium +0.6977 538 538 10683 1.1 0.01695 1492 species Clostridium butyricum +0.3411 263 263 6414 1.3 0.002355 1520 species Clostridium beijerinckii +0.105 81 81 1630 1.16 0.002339 1502 species Clostridium perfringens +0.005188 4 0 419 1.25 1.288e-05 2614128 no rank unclassified Clostridium +0.003891 3 3 70 1.67 0.0001233 2698831 species Clostridium sp. C8-1-8 +0.001297 1 1 347 1.17 1.345e-05 1506 species Clostridium sp. +0.002594 2 0 185 1.21 8.067e-06 59619 no rank environmental samples +0.002594 2 2 185 1.21 9.452e-06 59620 species uncultured Clostridium sp. +0.002594 2 0 104 1.08 3.796e-06 189971 no rank unclassified Clostridiaceae +0.002594 2 2 100 1.08 4.109e-06 1898204 species Clostridiaceae bacterium +0.001297 1 0 39 1.18 0.0001061 1403538 genus Fervidicella +0.001297 1 1 39 1.18 0.0001061 655338 species Fervidicella metallireducens +0.7224 557 19 18115 1.07 5.143e-05 186803 family Lachnospiraceae +0.2321 179 2 3869 1.05 0.0004912 841 genus Roseburia +0.2153 166 166 3571 1.05 0.01066 301301 species Roseburia hominis +0.01427 11 11 205 1 0.0005334 166486 species Roseburia intestinalis +0.2023 156 39 5667 1.09 0.001171 2569097 genus Anaerobutyricum +0.1517 117 117 3372 1.1 0.006891 39488 species Anaerobutyricum hallii +0.1945 150 1 5559 1.05 0.001579 207244 genus Anaerostipes +0.1932 149 149 5248 1.05 0.005334 649756 species Anaerostipes hadrus +0.02853 22 11 922 1.05 3.63e-05 572511 genus Blautia +0.01297 10 10 322 1.04 0.0004028 418240 species Blautia wexlerae +0.001297 1 0 78 1.06 5.047e-06 2648079 no rank unclassified Blautia +0.001297 1 1 78 1.06 5.17e-06 1955243 species Blautia sp. +0.02334 18 0 417 1.32 9.825e-05 2676048 genus Schaedlerella +0.02334 18 0 417 1.32 0.0001205 2676056 no rank unclassified Schaedlerella +0.02334 18 18 417 1.32 0.0001205 2676057 species Schaedlerella sp. +0.006484 5 0 85 1.32 1.098e-05 1427378 genus Acetatifactor +0.006484 5 0 85 1.32 1.206e-05 2633901 no rank unclassified Acetatifactor +0.006484 5 5 85 1.32 1.206e-05 1872090 species Acetatifactor sp. +0.003891 3 0 105 1.19 4.022e-05 2005355 genus Faecalimonas +0.003891 3 0 105 1.19 4.85e-05 2624616 no rank unclassified Faecalimonas +0.003891 3 3 105 1.19 4.85e-05 2005356 species Faecalimonas sp. +0.003891 3 0 142 1.27 3.656e-05 1766253 genus Agathobacter +0.003891 3 0 142 1.27 4.025e-05 2641574 no rank unclassified Agathobacter +0.003891 3 3 142 1.27 4.025e-05 2021311 species Agathobacter sp. +0.001297 1 0 36 1 2.281e-05 1918511 genus Frisingicoccus +0.001297 1 0 36 1 2.778e-05 2621361 no rank unclassified Frisingicoccus +0.001297 1 1 36 1 2.778e-05 1918627 species Frisingicoccus sp. +0.001297 1 0 36 1 4.329e-06 1663717 genus Herbinix +0.001297 1 1 36 1 4.501e-05 1564487 species Herbinix hemicellulosilytica +0.1673 129 1 3372 1.08 1.355e-05 216572 family Oscillospiraceae +0.1076 83 1 2037 1.1 0.0003972 35829 genus Acetivibrio +0.105 81 81 1960 1.1 0.004748 1515 species Acetivibrio thermocellus +0.001297 1 1 51 1.14 0.0001065 253314 species Acetivibrio straminisolvens +0.03761 29 0 643 1.06 6.888e-06 1263 genus Ruminococcus +0.03761 29 29 614 1.04 0.001398 438033 species Ruminococcus gauvreauii +0.01945 15 0 402 1.03 5.281e-05 216851 genus Faecalibacterium +0.01945 15 15 347 1.04 0.0001046 853 species Faecalibacterium prausnitzii +0.001297 1 0 29 1 2.162e-06 1508657 genus Ruminiclostridium +0.001297 1 0 22 1 2.527e-06 2627732 no rank unclassified Ruminiclostridium +0.001297 1 1 22 1 2.527e-06 2053608 species Ruminiclostridium sp. +0.01038 8 0 518 1.05 8.98e-06 186806 family Eubacteriaceae +0.01038 8 0 517 1.05 1.1e-05 1730 genus Eubacterium +0.009078 7 0 476 1.05 1.25e-05 2624479 no rank unclassified Eubacterium +0.009078 7 7 476 1.05 1.272e-05 142586 species Eubacterium sp. +0.001297 1 0 28 1.07 1.188e-05 84372 no rank environmental samples +0.001297 1 1 28 1.07 1.351e-05 165185 species uncultured Eubacterium sp. +0.003891 3 0 307 1.17 2.868e-06 50559 no rank environmental samples +0.003891 3 3 307 1.17 2.868e-06 172733 species uncultured Eubacteriales bacterium +0.003891 3 0 233 1.23 2.692e-06 39779 no rank unclassified Eubacteriales +0.003891 3 3 226 1.24 3.501e-06 1898207 species Clostridiales bacterium +0.001297 1 0 31 1.32 9.186e-06 31984 family Heliobacteriaceae +0.001297 1 0 31 1.32 3.199e-05 2697 genus Heliobacterium +0.001297 1 1 31 1.32 6.979e-05 2698 species Heliobacterium chlorum +0.009078 7 0 151 1.53 7.934e-06 68295 order Thermoanaerobacterales +0.009078 7 0 142 1.56 2.336e-05 543371 family Thermoanaerobacterales Family III. Incertae Sedis +0.009078 7 7 142 1.56 4.864e-05 44000 genus Caldicellulosiruptor +0.002594 2 0 146 1.01 2.921e-06 348841 no rank unclassified Clostridia +0.002594 2 2 145 1.01 3.096e-06 2044939 species Clostridia bacterium +0.006484 5 0 189 1.16 4.973e-06 1737404 class Tissierellia +0.006484 5 0 187 1.16 8.056e-06 1737405 order Tissierellales +0.005188 4 0 179 1.17 1.155e-05 1570339 family Peptoniphilaceae +0.002594 2 0 42 1.19 8.729e-06 165779 genus Anaerococcus +0.002594 2 2 37 1.11 0.0001788 33032 species Anaerococcus lactolyticus +0.002594 2 0 132 1.17 0.000145 150022 genus Finegoldia +0.002594 2 0 132 1.17 0.0005686 2619637 no rank unclassified Finegoldia +0.002594 2 2 132 1.17 0.0005686 1981334 species Finegoldia sp. +0.001297 1 0 7 1 1.053e-06 1737406 family Tissierellaceae +0.001297 1 0 6 1 2.148e-06 41273 genus Tissierella +0.001297 1 0 5 1 3.805e-06 2638726 no rank unclassified Tissierella +0.001297 1 1 5 1 5.364e-06 41274 species Tissierella sp. +0.003891 3 0 218 1.05 2.89e-06 909932 class Negativicutes +0.002594 2 0 135 1.07 5.231e-06 1843489 order Veillonellales +0.002594 2 0 135 1.07 5.231e-06 31977 family Veillonellaceae +0.001297 1 0 10 1 1.936e-06 906 genus Megasphaera +0.001297 1 1 7 1 1.735e-05 39029 species Megasphaera cerevisiae +0.001297 1 0 90 1.09 1.763e-05 39948 genus Dialister +0.001297 1 0 90 1.09 2.297e-05 2638756 no rank unclassified Dialister +0.001297 1 1 90 1.09 2.297e-05 1955814 species Dialister sp. +0.001297 1 0 72 1 6.297e-06 1843488 order Acidaminococcales +0.001297 1 0 72 1 6.297e-06 909930 family Acidaminococcaceae +0.001297 1 0 63 1 1.256e-05 33024 genus Phascolarctobacterium +0.001297 1 0 63 1 1.476e-05 2639160 no rank unclassified Phascolarctobacterium +0.001297 1 1 63 1 1.476e-05 2049039 species Phascolarctobacterium sp. +12.35 9523 17 185869 1.32 6.252e-05 201174 phylum Actinobacteria +11.49 8860 24 167245 1.33 6.084e-05 1760 class Actinomycetia +10.95 8443 0 157343 1.32 0.004663 85004 order Bifidobacteriales +10.95 8443 27 157343 1.32 0.004683 31953 family Bifidobacteriaceae +10.91 8416 1299 155909 1.32 0.005482 1678 genus Bifidobacterium +9.121 7033 7033 117156 1.32 0.2406 216816 species Bifidobacterium longum +0.04928 38 38 1455 1.34 0.004579 983706 species Bifidobacterium reuteri +0.03761 29 0 2150 1.33 0.0004631 2608897 no rank unclassified Bifidobacterium +0.03761 29 29 2096 1.34 0.0004825 41200 species Bifidobacterium sp. +0.007781 6 6 347 1.27 0.001512 762210 species Bifidobacterium saguini +0.003891 3 3 320 1.89 0.001038 1685 species Bifidobacterium breve +0.002594 2 2 72 2.39 0.0002602 1680 species Bifidobacterium adolescentis +0.002594 2 2 149 1.27 0.0004416 1630172 species Bifidobacterium hapali +0.001297 1 1 60 2.72 0.0001907 77635 species Bifidobacterium subtile +0.001297 1 1 118 1.49 0.0001844 33905 species Bifidobacterium thermophilum +0.001297 1 1 79 1.43 0.0002544 2020964 species Bifidobacterium margollesii +0.001297 1 1 56 1.41 0.0001826 1333651 species Bifidobacterium moukalabense +0.3956 305 2 6413 1.12 1.376e-05 85007 order Corynebacteriales +0.2931 226 0 4617 1.11 0.00636 316606 family Segniliparaceae +0.2931 226 0 4617 1.11 0.00636 286801 genus Segniliparus +0.2931 226 226 4593 1.11 0.01345 286802 species Segniliparus rotundus +0.07003 54 0 1307 1.17 2.577e-05 1653 family Corynebacteriaceae +0.07003 54 2 1307 1.17 2.577e-05 1716 genus Corynebacterium +0.06225 48 48 1056 1.11 0.002465 1718 species Corynebacterium glutamicum +0.002594 2 2 40 1.65 0.0002388 161889 species Corynebacterium lipophiloflavum +0.001297 1 1 26 1.35 5.994e-05 43770 species Corynebacterium striatum +0.001297 1 1 17 1.35 6.439e-05 1979527 species Corynebacterium kefirresidentii +0.02983 23 0 346 1.14 1.661e-06 1762 family Mycobacteriaceae +0.02464 19 0 293 1.11 2.13e-06 1763 genus Mycobacterium +0.01427 11 0 153 1.11 2.74e-05 120793 species group Mycobacterium avium complex (MAC) +0.01427 11 11 152 1.11 0.0001469 425468 species Mycobacterium arosiense +0.002594 2 2 22 1 4.931e-05 547163 species Mycobacterium vulneris +0.002594 2 2 21 1 1.747e-05 39693 species Mycobacterium porcinum +0.001297 1 1 12 1 1.849e-05 2035343 species Mycobacterium eburneum +0.001297 1 1 7 1 7.068e-06 1783 species Mycobacterium scrofulaceum +0.001297 1 1 7 1 1.136e-05 1430326 species Mycobacterium decipiens +0.001297 1 1 37 1.32 2.558e-05 134601 species Mycobacterium goodii +0.003891 3 0 29 1.24 4.791e-06 1073531 genus Mycolicibacter +0.003891 3 3 29 1.24 6.116e-05 342002 species Mycolicibacter arupensis +0.001297 1 0 18 1.22 3.42e-07 1866885 genus Mycolicibacterium +0.001297 1 1 11 1 1.35e-05 36811 species Mycolicibacterium agri +0.05706 44 0 602 1.85 8.924e-07 85011 order Streptomycetales +0.05706 44 0 602 1.85 8.932e-07 2062 family Streptomycetaceae +0.05577 43 0 593 1.86 9.61e-07 1883 genus Streptomyces +0.05577 43 43 344 2.22 0.0006764 67332 species Streptomyces mutabilis +0.001297 1 0 7 1.14 2.048e-07 2063 genus Kitasatospora +0.001297 1 0 4 1.25 2.339e-07 2633591 no rank unclassified Kitasatospora +0.001297 1 1 4 1.25 2.339e-07 1871188 species Kitasatospora sp. +0.03502 27 0 384 1.03 2.294e-06 85009 order Propionibacteriales +0.03502 27 1 357 1.03 9.701e-06 31957 family Propionibacteriaceae +0.03372 26 4 340 1.03 0.0001956 1912216 genus Cutibacterium +0.02723 21 21 267 1.03 0.001045 1747 species Cutibacterium acnes +0.001297 1 1 21 1 6.345e-05 2559073 species Cutibacterium modestum +0.007781 6 0 158 1.3 3.727e-06 2037 order Actinomycetales +0.007781 6 0 157 1.29 4.09e-06 2049 family Actinomycetaceae +0.002594 2 0 38 1.45 4.809e-05 2692113 genus Gleimia +0.002594 2 2 38 1.45 0.0002009 103618 species Gleimia coleocanis +0.002594 2 0 37 1.11 9.846e-06 2529408 genus Schaalia +0.002594 2 2 36 1.11 4.853e-05 1660 species Schaalia odontolytica +0.002594 2 0 75 1.32 3.673e-06 1654 genus Actinomyces +0.001297 1 0 7 1 1.067e-06 2609248 no rank unclassified Actinomyces +0.001297 1 1 6 1 2.78e-05 712118 species Actinomyces sp. oral taxon 172 +0.001297 1 1 54 1.44 7.788e-05 131109 species Actinomyces bowdenii +0.005188 4 1 608 1.3 1.121e-06 85006 order Micrococcales +0.002594 2 0 321 1.36 2.449e-06 1268 family Micrococcaceae +0.001297 1 0 100 1.34 1.973e-06 1663 genus Arthrobacter +0.001297 1 0 88 1.35 2.856e-06 235627 no rank unclassified Arthrobacter +0.001297 1 1 88 1.35 3.06e-06 1667 species Arthrobacter sp. +0.001297 1 0 157 1.25 0.0001908 1164863 genus Enteractinococcus +0.001297 1 1 157 1.25 0.0003436 1837282 species Enteractinococcus helveticum +0.001297 1 0 219 1.26 9.028e-07 85023 family Microbacteriaceae +0.001297 1 0 136 1.29 1.683e-06 33882 genus Microbacterium +0.001297 1 0 115 1.33 2.658e-06 2609290 no rank unclassified Microbacterium +0.001297 1 1 115 1.33 2.658e-06 51671 species Microbacterium sp. +0.003891 3 0 191 1.24 1.29e-06 85008 order Micromonosporales +0.003891 3 0 191 1.24 1.29e-06 28056 family Micromonosporaceae +0.003891 3 0 184 1.25 2.451e-06 1873 genus Micromonospora +0.001297 1 1 6 1.33 1.12e-05 709868 species Micromonospora ureilytica +0.001297 1 0 47 1.15 1.966e-06 2617518 no rank unclassified Micromonospora +0.001297 1 1 47 1.15 1.966e-06 1876 species Micromonospora sp. +0.001297 1 1 34 1.38 5.081e-05 2070366 species Micromonospora deserti +0.002594 2 0 136 1.26 1.079e-05 1217098 order Jiangellales +0.002594 2 0 136 1.26 1.079e-05 1217100 family Jiangellaceae +0.002594 2 0 136 1.26 1.64e-05 281472 genus Jiangella +0.002594 2 2 134 1.27 0.0001792 2670374 species Jiangella anatolica +0.001297 1 0 101 1.41 5.429e-07 85012 order Streptosporangiales +0.001297 1 0 86 1.36 9.969e-07 2004 family Streptosporangiaceae +0.001297 1 0 10 1 9.902e-07 2000 genus Streptosporangium +0.001297 1 1 10 1 1.616e-05 35764 species Streptosporangium nondiastaticum +0.001297 1 0 116 1.2 5.458e-07 85010 order Pseudonocardiales +0.001297 1 0 116 1.2 5.515e-07 2070 family Pseudonocardiaceae +0.001297 1 0 73 1.18 1.096e-06 1813 genus Amycolatopsis +0.001297 1 0 40 1.2 2.815e-06 2618356 no rank unclassified Amycolatopsis +0.001297 1 1 40 1.2 2.815e-06 37632 species Amycolatopsis sp. +0.8378 646 22 18724 1.14 0.000231 84998 class Coriobacteriia +0.8054 621 2 18232 1.12 0.0003443 84999 order Coriobacteriales +0.498 384 1 7823 1.16 0.0005664 1643824 family Atopobiaceae +0.4967 383 6 7756 1.16 0.0008109 133925 genus Olsenella +0.4876 376 376 7477 1.16 0.0105 133926 species Olsenella uli +0.001297 1 0 78 1.24 1.07e-05 2638792 no rank unclassified Olsenella +0.001297 1 1 78 1.24 1.103e-05 2042683 species Olsenella sp. +0.3048 235 2 10146 1.09 0.0002664 84107 family Coriobacteriaceae +0.2957 228 143 9888 1.08 0.0005193 102106 genus Collinsella +0.1089 84 0 4780 1.15 0.0003234 2637548 no rank unclassified Collinsella +0.1089 84 84 4774 1.15 0.0003502 1965294 species Collinsella sp. +0.001297 1 1 249 1.02 0.0003102 74426 species Collinsella aerofaciens +0.005188 4 0 66 1.88 6.234e-05 1473205 genus Senegalimassilia +0.005188 4 4 65 1.89 0.0002068 2509433 species Senegalimassilia faecalis +0.001297 1 0 108 1.37 8.43e-06 331631 no rank environmental samples +0.001297 1 1 108 1.37 8.43e-06 331632 species uncultured Coriobacteriaceae bacterium +0.003891 3 0 137 1.51 6.378e-06 1643822 order Eggerthellales +0.003891 3 0 137 1.51 6.531e-06 1643826 family Eggerthellaceae +0.003891 3 0 116 1.48 4.094e-05 84108 genus Slackia +0.003891 3 0 115 1.48 0.0001258 2685017 no rank unclassified Slackia +0.003891 3 3 115 1.48 0.0001876 2049041 species Slackia sp. +2.14 1650 0 36181 1.19 0.000728 1297 phylum Deinococcus-Thermus +2.14 1650 0 36181 1.19 0.000728 188787 class Deinococci +2.139 1649 0 36118 1.19 0.00297 68933 order Thermales +2.139 1649 45 36118 1.19 0.00297 188786 family Thermaceae +2.076 1601 47 34295 1.18 0.0087 65551 genus Meiothermus +1.996 1539 1539 31059 1.19 0.08485 52022 species Meiothermus silvanus +0.01297 10 10 176 2.24 0.0003854 884155 species Meiothermus hypogaeus +0.003891 3 0 1421 1.15 0.001929 370471 no rank unclassified Meiothermus +0.003891 3 3 1421 1.15 0.001929 1955249 species Meiothermus sp. +0.002594 2 2 155 1.11 0.000442 2026184 species Meiothermus luteus +0.002594 2 0 52 2.13 8.897e-06 270 genus Thermus +0.002594 2 0 31 2.55 4.384e-05 2619321 no rank unclassified Thermus +0.002594 2 2 31 2.55 4.389e-05 275 species Thermus sp. +0.001297 1 0 135 1.13 0.0001074 2747271 genus Calidithermus +0.001297 1 1 135 1.13 0.0002953 1644118 species Calidithermus roseus +0.001297 1 0 45 1.04 1.454e-06 118964 order Deinococcales +0.001297 1 0 45 1.04 1.518e-06 183710 family Deinococcaceae +0.001297 1 0 45 1.04 1.539e-06 1298 genus Deinococcus +0.001297 1 1 15 1 4.54e-05 1299 species Deinococcus radiodurans +0.001297 1 0 135 1.2 2.574e-06 544448 phylum Tenericutes +0.001297 1 0 105 1.19 1.774e-05 658142 no rank environmental samples +0.001297 1 1 105 1.19 1.774e-05 658143 species uncultured Tenericutes bacterium +0.001297 1 0 62 1.1 1.658e-07 1798711 clade Cyanobacteria/Melainabacteria group +0.001297 1 0 44 1.11 1.26e-07 1117 phylum Cyanobacteria +0.001297 1 0 26 1 2.912e-07 1161 order Nostocales +0.001297 1 0 22 1 7.247e-07 1162 family Nostocaceae +0.001297 1 0 21 1 1.096e-06 1177 genus Nostoc +0.001297 1 0 21 1 2.211e-06 2593658 no rank unclassified Nostoc +0.001297 1 1 21 1 2.211e-06 1180 species Nostoc sp. +27.84 21467 203 474420 1.22 7.187e-05 1224 phylum Proteobacteria +20.89 16110 163 355801 1.23 0.000158 1236 class Gammaproteobacteria +16.35 12605 251 291935 1.24 0.0009731 91347 order Enterobacterales +15.99 12333 874 277473 1.23 0.002339 543 family Enterobacteriaceae +11.42 8807 5225 181744 1.28 0.02882 561 genus Escherichia +3.332 2569 2569 56355 1.28 0.04647 562 species Escherichia coli +1.207 931 0 42474 1.29 0.01777 2608889 no rank unclassified Escherichia +1.207 931 931 42474 1.29 0.01777 1884818 species Escherichia sp. +0.06484 50 50 1421 1.21 0.004025 564 species Escherichia fergusonii +0.02983 23 23 2737 1.27 0.00324 208962 species Escherichia albertii +0.01038 8 8 479 1.21 0.001072 1499973 species Escherichia marmotae +0.001297 1 1 13 1.62 2.811e-05 2562891 species Escherichia alba +3.24 2498 107 50107 1.15 0.01863 590 genus Salmonella +3.024 2332 2331 44253 1.15 0.02076 28901 species Salmonella enterica +0.001297 1 1 273 2.46 0.242 59201 subspecies Salmonella enterica subsp. enterica +0.07652 59 59 1747 1.1 0.003463 54736 species Salmonella bongori +0.07911 61 11 2338 1.22 0.0001665 544 genus Citrobacter +0.05058 39 18 1205 1.21 0.000168 1344959 species group Citrobacter freundii complex +0.01038 8 8 309 1.19 0.0002776 1639133 species Citrobacter portucalensis +0.009078 7 7 121 1.19 0.0001344 57706 species Citrobacter braakii +0.006484 5 5 244 1.23 0.0001124 546 species Citrobacter freundii +0.001297 1 1 55 1.36 0.0001072 67826 species Citrobacter sedlakii +0.005188 4 4 193 1.24 0.0003364 67825 species Citrobacter rodentium +0.005188 4 4 278 1.27 0.0001426 35703 species Citrobacter amalonaticus +0.002594 2 0 105 1.28 5.203e-05 2644389 no rank unclassified Citrobacter +0.002594 2 2 105 1.28 5.203e-05 1896336 species Citrobacter sp. +0.001297 1 1 17 1.06 4.576e-05 67824 species Citrobacter farmeri +0.03891 30 14 710 1.15 7.828e-05 570 genus Klebsiella +0.01038 8 8 136 1.12 8.981e-05 1134687 species Klebsiella michiganensis +0.007781 6 6 119 1.06 7.405e-05 571 species Klebsiella oxytoca +0.001297 1 1 25 1.08 5.366e-05 2153354 species Klebsiella huaxiensis +0.001297 1 1 112 1.11 0.0001078 1463165 species Klebsiella quasipneumoniae +0.03891 30 9 1475 1.19 7.42e-05 547 genus Enterobacter +0.01945 15 3 961 1.18 8.153e-05 354276 species group Enterobacter cloacae complex +0.009078 7 7 335 1.24 0.0006667 2494701 species Enterobacter chengduensis +0.002594 2 2 168 1.17 4.423e-05 550 species Enterobacter cloacae +0.001297 1 1 185 1.19 0.0001252 69218 species Enterobacter cancerogenus +0.001297 1 1 41 1.29 4.228e-05 61645 species Enterobacter asburiae +0.001297 1 1 28 1 2.688e-05 158836 species Enterobacter hormaechei +0.003891 3 0 142 1.25 4.006e-05 2608935 no rank unclassified Enterobacter +0.003891 3 3 101 1.25 4.041e-05 42895 species Enterobacter sp. +0.001297 1 1 14 1.5 2.625e-05 539813 species Enterobacter mori +0.001297 1 1 37 1.43 8.466e-05 2529381 species Enterobacter wuhouensis +0.001297 1 1 43 1.26 9.315e-05 1755099 species Enterobacter timonensis +0.006484 5 0 348 1.21 8.669e-05 579 genus Kluyvera +0.003891 3 3 118 1.18 0.0002296 73098 species Kluyvera georgiana +0.001297 1 1 61 1.13 5.761e-05 580 species Kluyvera cryocrescens +0.001297 1 1 49 1.31 5.154e-05 51288 species Kluyvera ascorbata +0.006484 5 0 100 1.19 2.854e-05 36866 no rank unclassified Enterobacteriaceae +0.006484 5 5 62 1.21 0.0001115 1849603 species Enterobacteriaceae bacterium +0.005188 4 1 156 1.19 0.0001299 1504576 genus Pseudocitrobacter +0.002594 2 2 31 1.06 8.344e-05 1398493 species Pseudocitrobacter faecalis +0.001297 1 0 115 1.2 0.0001538 2638778 no rank unclassified Pseudocitrobacter +0.001297 1 1 115 1.2 0.0001538 1903748 species Pseudocitrobacter sp. +0.003891 3 0 168 1.24 2.934e-05 82976 genus Buttiauxella +0.002594 2 2 28 1.18 5.97e-05 82993 species Buttiauxella warmboldiae +0.001297 1 0 31 1.26 2.039e-05 2634062 no rank unclassified Buttiauxella +0.001297 1 1 31 1.26 2.039e-05 1972222 species Buttiauxella sp. +0.002594 2 0 60 1.15 1.658e-05 83654 genus Leclercia +0.001297 1 1 20 1.1 1.151e-05 83655 species Leclercia adecarboxylata +0.001297 1 0 31 1.16 1.82e-05 2627398 no rank unclassified Leclercia +0.001297 1 1 31 1.16 1.82e-05 1898428 species Leclercia sp. +0.002594 2 0 169 1.15 5.013e-05 2726810 genus Scandinavium +0.002594 2 0 153 1.16 5.239e-05 2830652 no rank unclassified Scandinavium +0.002594 2 2 153 1.16 5.239e-05 2830653 species Scandinavium sp. +0.002594 2 0 39 1.21 8.311e-05 2055876 genus Metakosakonia +0.002594 2 2 39 1.21 8.311e-05 1485952 species Metakosakonia massiliensis +0.002594 2 0 143 1.28 2.6e-05 158483 genus Cedecea +0.002594 2 2 47 1.51 3.591e-05 158823 species Cedecea lapagei +0.002594 2 0 111 1.24 4.557e-05 1330545 genus Lelliottia +0.001297 1 0 40 1.25 4.652e-05 2642424 no rank unclassified Lelliottia +0.001297 1 1 40 1.25 4.652e-05 1898429 species Lelliottia sp. +0.001297 1 1 37 1.22 9.539e-05 1907578 species Lelliottia jeotgali +0.001297 1 0 77 1.23 3.31e-05 447792 genus Phytobacter +0.001297 1 1 16 1.12 2.377e-05 395631 species Phytobacter diazotrophicus +0.001297 1 0 37 1.14 5.99e-05 2303321 genus Superficieibacter +0.001297 1 1 37 1.14 5.99e-05 2022662 species Superficieibacter electus +0.001297 1 0 73 1.16 3.986e-05 2055880 genus Pseudescherichia +0.001297 1 1 28 1.07 6.291e-05 566 species Pseudescherichia vulneris +0.001297 1 0 97 1.16 4.094e-05 1903434 genus Atlantibacter +0.001297 1 1 37 1.08 3.975e-05 565 species Atlantibacter hermannii +0.001297 1 1 163 1.12 3.159e-05 160674 genus Raoultella +0.001297 1 0 150 1.2 2.309e-05 1330547 genus Kosakonia +0.001297 1 0 33 1.18 1.91e-05 2632876 no rank unclassified Kosakonia +0.001297 1 1 33 1.18 1.91e-05 1916651 species Kosakonia sp. +0.01038 8 0 170 1.39 4.364e-06 1903414 family Morganellaceae +0.006484 5 0 98 1.57 8.867e-06 626 genus Xenorhabdus +0.006484 5 5 82 1.65 0.0001653 290112 species Xenorhabdus szentirmaii +0.001297 1 0 18 1.22 2.007e-06 586 genus Providencia +0.001297 1 1 1 1 1.907e-06 333962 species Providencia heimbachae +0.001297 1 0 13 1.15 4.593e-06 581 genus Morganella +0.001297 1 1 9 1.22 4.857e-06 582 species Morganella morganii +0.001297 1 1 13 1 1.924e-06 29487 genus Photorhabdus +0.007781 6 2 560 1.21 1.029e-05 1903409 family Erwiniaceae +0.002594 2 0 306 1.2 1.108e-05 53335 genus Pantoea +0.001297 1 1 23 1.09 2.228e-05 553 species Pantoea ananatis +0.001297 1 0 90 1.27 9.659e-06 2630326 no rank unclassified Pantoea +0.001297 1 1 5 1.2 1.094e-05 1925589 species Pantoea sp. 1.19 +0.001297 1 0 109 1.14 7.28e-06 551 genus Erwinia +0.001297 1 0 37 1.19 7.956e-06 2622719 no rank unclassified Erwinia +0.001297 1 1 37 1.19 7.956e-06 558 species Erwinia sp. +0.001297 1 0 72 1.32 3.174e-05 2100764 genus Mixta +0.001297 1 1 61 1.34 0.0001195 1458355 species Mixta theicola +0.003891 3 1 460 1.26 9.454e-06 1903411 family Yersiniaceae +0.002594 2 0 187 1.18 1.051e-05 613 genus Serratia +0.002594 2 2 61 1.11 2.171e-05 615 species Serratia marcescens +0.002594 2 0 112 1.31 1.755e-05 1903412 family Hafniaceae +0.002594 2 0 58 1.41 2.018e-05 568 genus Hafnia +0.001297 1 1 41 1.24 3.066e-05 569 species Hafnia alvei +0.001297 1 1 17 1.82 1.644e-05 546367 species Hafnia paralvei +0.002594 2 0 155 1.33 7.399e-06 1903410 family Pectobacteriaceae +0.001297 1 0 26 1.15 8.029e-06 71655 genus Brenneria +0.001297 1 1 1 1 2.269e-06 1509241 species Brenneria roseae +0.001297 1 0 35 1.4 6.244e-06 204037 genus Dickeya +0.001297 1 1 3 1 8.967e-06 204038 species Dickeya dadantii +3.406 2626 3 40544 1.09 8.206e-05 72274 order Pseudomonadales +3.356 2588 14 39841 1.09 9.927e-05 135621 family Pseudomonadaceae +3.337 2573 754 39015 1.09 9.855e-05 286 genus Pseudomonas +1.923 1483 77 18905 1.09 0.001428 136841 species group Pseudomonas aeruginosa group +1.807 1393 1393 17858 1.08 0.02315 287 species Pseudomonas aeruginosa +0.005188 4 4 76 1.08 4.733e-05 300 species Pseudomonas mendocina +0.003891 3 0 225 1.09 0.0001069 627141 species subgroup Pseudomonas nitroreducens/multiresinivorans group +0.003891 3 3 225 1.09 0.0001069 46680 species Pseudomonas nitroreducens +0.003891 3 3 28 1 1.749e-05 53412 species Pseudomonas resinovorans +0.002594 2 0 29 1.07 2.149e-05 1232139 species subgroup Pseudomonas oleovorans/pseudoalcaligenes group +0.002594 2 2 23 1.04 2.808e-05 301 species Pseudomonas oleovorans +0.001297 1 1 72 1.03 7.427e-05 53408 species Pseudomonas citronellolis +0.2931 226 4 5188 1.08 0.0003704 136846 species group Pseudomonas stutzeri group +0.2879 222 1 5120 1.08 0.0004451 578833 species subgroup Pseudomonas stutzeri subgroup +0.2866 221 221 5071 1.08 0.000448 316 species Pseudomonas stutzeri +0.07911 61 0 1815 1.1 1.222e-05 196821 no rank unclassified Pseudomonas +0.07522 58 58 1717 1.09 1.16e-05 306 species Pseudomonas sp. +0.003891 3 3 87 1.11 0.0001635 2593654 species Pseudomonas sp. DMKU_BBB3-04 +0.005188 4 4 13 1.08 2.6e-05 2211392 species Pseudomonas kirkiae +0.005188 4 1 174 1.1 8.431e-06 136845 species group Pseudomonas putida group +0.001297 1 1 7 1 1.48e-05 70775 species Pseudomonas plecoglossicida +0.001297 1 1 23 1.3 1.242e-05 47880 species Pseudomonas fulva +0.001297 1 1 61 1.03 5.633e-06 303 species Pseudomonas putida +0.005188 4 0 85 1.06 1.527e-05 136842 species group Pseudomonas chlororaphis group +0.005188 4 4 82 1.06 2.568e-05 587753 species Pseudomonas chlororaphis +0.003891 3 3 296 1.1 0.0004146 366289 species Pseudomonas delhiensis +0.003891 3 0 135 1.03 3.2e-06 136843 species group Pseudomonas fluorescens group +0.001297 1 1 4 1 8.196e-06 78544 species Pseudomonas gessardii +0.001297 1 1 46 1.02 2.208e-06 294 species Pseudomonas fluorescens +0.001297 1 1 4 1 4.669e-06 219574 species Pseudomonas proteolytica +0.002594 2 2 15 1 2.582e-05 915472 species Pseudomonas nitritireducens +0.002594 2 2 11 1.27 1.754e-05 574962 species Pseudomonas taeanensis +0.002594 2 2 19 1 3.962e-05 556533 species Pseudomonas benzenivorans +0.002594 2 2 37 1.03 7.207e-05 428992 species Pseudomonas panipatensis +0.002594 2 2 10 1.1 3.082e-05 157784 species Pseudomonas thermotolerans +0.002594 2 2 20 1.05 3.157e-05 1387231 species Pseudomonas aestus +0.002594 2 0 55 1.13 3.308e-06 136849 species group Pseudomonas syringae group +0.002594 2 2 23 1.13 1.816e-05 50340 species Pseudomonas fuscovaginae +0.001297 1 1 23 1.26 5.435e-05 706570 species Pseudomonas flexibilis +0.001297 1 1 19 1.11 2.098e-05 658457 species Pseudomonas composti +0.001297 1 1 17 1.06 1.825e-05 291995 species Pseudomonas azotifigens +0.001297 1 1 13 1.08 2.864e-05 289003 species Pseudomonas borbori +0.001297 1 1 9 1 1.545e-05 254161 species Pseudomonas pachastrellae +0.001297 1 1 85 1.04 8.841e-05 2502979 species Pseudomonas khazarica +0.001297 1 1 52 1.13 8.855e-05 2487520 species Pseudomonas dryadis +0.001297 1 1 27 1.33 5.042e-05 2482751 species Pseudomonas nitrititolerans +0.001297 1 1 2 1 3.398e-06 2293833 species Pseudomonas nabeulensis +0.001297 1 1 12 1 1.712e-05 2219225 species Pseudomonas asiatica +0.001297 1 1 4 1 6.635e-06 2056231 species Pseudomonas qingdaonensis +0.001297 1 1 3 1 5.215e-06 1880678 species Pseudomonas sivasensis +0.001297 1 1 7 1 1.803e-05 157792 species Pseudomonas xiamenensis +0.001297 1 1 15 1 1.338e-05 1495066 species Pseudomonas capeferrum +0.001297 1 1 11 1.09 4.359e-06 117681 species Pseudomonas gingeri +0.001297 1 1 485 1.13 0.001239 1176259 species Pseudomonas songnenensis +0.001297 1 1 11 1 3.34e-06 104087 species Pseudomonas frederiksbergensis +0.001297 1 0 38 1.03 1.368e-05 351 subfamily Azotobacter group +0.001297 1 0 37 1.03 2.065e-05 352 genus Azotobacter +0.001297 1 1 9 1 1.931e-05 354 species Azotobacter vinelandii +0.04539 35 0 628 1.14 7.152e-06 468 family Moraxellaceae +0.04409 34 18 599 1.06 1.031e-05 469 genus Acinetobacter +0.01945 15 10 200 1.07 4.695e-05 909768 species group Acinetobacter calcoaceticus/baumannii complex +0.002594 2 2 31 1.1 3.602e-05 48296 species Acinetobacter pittii +0.001297 1 1 57 1.04 7.585e-05 1785128 species Acinetobacter lactucae +0.001297 1 1 5 1.6 1.131e-05 1530123 species Acinetobacter seifertii +0.001297 1 1 35 1.06 6.785e-05 106654 species Acinetobacter nosocomialis +0.001297 1 0 61 1.05 2.545e-06 196816 no rank unclassified Acinetobacter +0.001297 1 1 61 1.05 2.545e-06 472 species Acinetobacter sp. +0.001297 1 0 17 3.59 2.688e-06 475 genus Moraxella +0.001297 1 0 17 3.59 4.188e-05 2685852 no rank unclassified Moraxella +0.001297 1 1 17 3.59 4.188e-05 479 species Moraxella sp. +0.8975 692 1 15460 1.12 8.188e-05 135614 order Xanthomonadales +0.8767 676 5 14783 1.12 0.0002553 1775411 family Rhodanobacteraceae +0.8689 670 0 14383 1.12 0.007087 70411 genus Frateuria +0.8689 670 670 14311 1.12 0.03706 81475 species Frateuria aurantia +0.001297 1 0 7 1 5.717e-06 1649642 genus Oleiagrimonas +0.001297 1 0 5 1 1.052e-05 2638796 no rank unclassified Oleiagrimonas +0.001297 1 1 5 1 1.052e-05 2010330 species Oleiagrimonas sp. +0.01945 15 2 486 1.09 3.891e-06 32033 family Xanthomonadaceae +0.01038 8 6 235 1.11 1.69e-05 83614 genus Luteimonas +0.002594 2 0 24 1.29 2.785e-06 2629088 no rank unclassified Luteimonas +0.002594 2 2 24 1.29 2.785e-06 1873125 species Luteimonas sp. +0.005188 4 0 80 1.07 3.368e-06 68 genus Lysobacter +0.003891 3 0 67 1.09 5.483e-06 2635362 no rank unclassified Lysobacter +0.003891 3 3 67 1.09 5.652e-06 72226 species Lysobacter sp. +0.001297 1 1 2 1 2.005e-06 69 species Lysobacter enzymogenes +0.001297 1 1 26 1.23 1.022e-06 338 genus Xanthomonas +0.01038 8 0 412 1.3 1.596e-06 135622 order Alteromonadales +0.007781 6 0 289 1.31 3.098e-06 72275 family Alteromonadaceae +0.007781 6 0 263 1.32 7.025e-06 2742 genus Marinobacter +0.003891 3 0 245 1.34 1.749e-05 83889 no rank unclassified Marinobacter +0.003891 3 3 245 1.34 1.749e-05 50741 species Marinobacter sp. +0.001297 1 1 2 1 4.779e-06 650891 species Marinobacter daqiaonensis +0.001297 1 1 1 1 2.213e-06 236100 species Marinobacter algicola +0.001297 1 1 3 1 7.334e-06 1562308 species Marinobacter piscensis +0.002594 2 0 42 1.02 8.53e-07 267888 family Pseudoalteromonadaceae +0.002594 2 0 41 1.02 8.628e-07 53246 genus Pseudoalteromonas +0.002594 2 2 24 1 1.483e-05 161398 species Pseudoalteromonas phenolica +0.006484 5 0 440 1.24 2.368e-06 135619 order Oceanospirillales +0.003891 3 0 158 1.28 2.791e-06 135620 family Oceanospirillaceae +0.002594 2 0 120 1.28 4.051e-05 965 genus Oceanospirillum +0.002594 2 2 117 1.29 0.0002466 966 species Oceanospirillum linum +0.001297 1 0 14 1 1.471e-06 48075 genus Marinobacterium +0.001297 1 0 10 1 3.154e-06 2644139 no rank unclassified Marinobacterium +0.001297 1 1 10 1 3.154e-06 1902815 species Marinobacterium sp. +0.001297 1 0 189 1.17 2.398e-06 28256 family Halomonadaceae +0.001297 1 0 109 1.19 2.948e-05 504090 genus Kushneria +0.001297 1 1 102 1.21 0.0002223 2100822 species Kushneria phyllosphaerae +0.001297 1 0 42 1.4 4.994e-06 2066474 family Endozoicomonadaceae +0.001297 1 0 23 1.7 3.287e-05 2066475 genus Parendozoicomonas +0.001297 1 1 23 1.7 3.287e-05 1960125 species Parendozoicomonas haliclonae +0.003891 3 0 119 1.22 8.298e-07 135623 order Vibrionales +0.003891 3 0 119 1.22 8.298e-07 641 family Vibrionaceae +0.003891 3 0 77 1.13 7.754e-07 662 genus Vibrio +0.002594 2 0 39 1.08 7.474e-06 1891919 species group Vibrio oreintalis group +0.002594 2 2 19 1.16 3.47e-05 170652 species Vibrio brasiliensis +0.001297 1 0 8 1.5 4.03e-07 2614977 no rank unclassified Vibrio +0.001297 1 1 8 1.5 4.03e-07 678 species Vibrio sp. +0.002594 2 0 65 1.12 1.996e-06 135625 order Pasteurellales +0.002594 2 0 65 1.12 2.052e-06 712 family Pasteurellaceae +0.002594 2 0 33 1.03 5.671e-06 724 genus Haemophilus +0.002594 2 2 28 1 0.0001121 1078480 species Haemophilus sputorum +0.002594 2 0 191 1.29 1.863e-06 135613 order Chromatiales +0.002594 2 0 152 1.32 3.619e-06 1046 family Chromatiaceae +0.001297 1 0 17 1 6.88e-06 53452 genus Lamprocystis +0.001297 1 1 17 1 2.333e-05 61598 species Lamprocystis purpurea +0.001297 1 0 115 1.41 2.601e-05 2071980 genus Pararheinheimera +0.001297 1 0 114 1.41 3.225e-05 2640263 no rank unclassified Pararheinheimera +0.001297 1 1 114 1.41 3.225e-05 2071981 species Pararheinheimera sp. +0.001297 1 0 17 1.24 2.854e-06 742030 order Salinisphaerales +0.001297 1 0 17 1.24 2.854e-06 742031 family Salinisphaeraceae +0.001297 1 0 17 1.24 3.393e-06 180541 genus Salinisphaera +0.001297 1 0 4 2 1.576e-06 2649847 no rank unclassified Salinisphaera +0.001297 1 1 4 2 1.576e-06 1914330 species Salinisphaera sp. +0.001297 1 0 2 1 2.318e-07 1240482 order Orbales +0.001297 1 0 2 1 2.318e-07 1240483 family Orbaceae +0.001297 1 0 2 1 2.787e-07 1193503 genus Gilliamella +0.001297 1 1 2 1 4.32e-07 1196095 species Gilliamella apicola +0.001297 1 0 85 1.09 1.925e-06 118969 order Legionellales +0.001297 1 0 82 1.1 2.495e-06 444 family Legionellaceae +0.001297 1 0 82 1.1 2.836e-06 445 genus Legionella +0.001297 1 1 81 1.09 0.0001885 70611 species Legionella taurinensis +0.001297 1 0 30 1.2 5.11e-07 118884 no rank Gammaproteobacteria incertae sedis +0.001297 1 0 8 1.25 9.168e-07 1400857 family Candidatus Competibacteraceae +0.001297 1 0 5 1.2 1.082e-06 1951614 no rank unclassified Candidatus Competibacteraceae +0.001297 1 1 3 1.33 9.436e-07 2053538 species Candidatus Competibacteraceae bacterium +6.567 5064 59 103762 1.17 4.465e-05 28211 class Alphaproteobacteria +4.391 3386 69 62759 1.16 0.0001465 204455 order Rhodobacterales +4.293 3310 147 59014 1.16 0.0002507 31989 family Rhodobacteraceae +4.026 3104 452 53899 1.15 0.01619 1653176 genus Cereibacter +2.726 2102 2102 33499 1.17 0.03351 1063 species Cereibacter sphaeroides +0.69 532 532 17237 1.12 0.03307 445629 species Cereibacter johrii +0.01427 11 11 308 1.1 0.0007257 43057 species Cereibacter azotoformans +0.006484 5 0 74 1.16 0.0001729 2705418 no rank unclassified Cereibacter +0.006484 5 5 74 1.16 0.0001729 2705419 species Cereibacter sp. +0.002594 2 2 46 1.09 0.0001267 439529 species Cereibacter ovatus +0.02983 23 0 413 1.06 0.0003403 2055850 genus Aquicoccus +0.02983 23 23 408 1.06 0.0008385 1852029 species Aquicoccus porphyridii +0.01297 10 0 235 1.15 7.256e-06 265 genus Paracoccus +0.007781 6 0 66 1.11 7.692e-06 246570 no rank unclassified Paracoccus +0.007781 6 6 66 1.11 7.692e-06 267 species Paracoccus sp. +0.003891 3 3 19 1.21 4.649e-05 2023261 species Paracoccus hibiscisoli +0.001297 1 1 7 1.86 1.983e-05 690417 species Paracoccus sphaerophysae +0.005188 4 0 64 1.25 8.799e-06 1060 genus Rhodobacter +0.002594 2 0 26 1.23 8.82e-06 196779 no rank unclassified Rhodobacter +0.002594 2 2 8 1.5 4.768e-06 1062 species Rhodobacter sp. +0.002594 2 2 10 1.4 1.05e-05 1061 species Rhodobacter capsulatus +0.003891 3 0 10 1.3 1.628e-05 1817584 genus Maliponia +0.003891 3 3 10 1.3 1.628e-05 1673631 species Maliponia aquimaris +0.003891 3 0 66 1.14 9.177e-06 1443919 genus Tabrizicola +0.003891 3 0 61 1.15 9.705e-06 2620214 no rank unclassified Tabrizicola +0.003891 3 3 22 1 4.072e-05 2305252 species Tabrizicola sp. DJC +0.002594 2 0 100 1.15 3.023e-06 58840 no rank unclassified Rhodobacteraceae +0.001297 1 1 6 1 1.339e-05 2710650 species Rhodobacteraceae bacterium KMS-5 +0.001297 1 1 46 1.13 2.161e-06 1904441 species Rhodobacteraceae bacterium +0.002594 2 0 38 1.05 2.319e-05 2663134 genus Pseudogemmobacter +0.002594 2 2 32 1 5.887e-05 2250708 species Pseudogemmobacter bohemicus +0.002594 2 0 12 1 3.403e-06 238783 genus Pseudorhodobacter +0.002594 2 0 12 1 6.809e-06 2644082 no rank unclassified Pseudorhodobacter +0.002594 2 2 8 1 6.11e-06 1934400 species Pseudorhodobacter sp. +0.002594 2 0 109 1.06 1.077e-05 204456 genus Gemmobacter +0.001297 1 1 5 1.6 1.345e-05 2595004 species Gemmobacter caeruleus +0.001297 1 1 5 1 1.228e-05 2306023 species Gemmobacter lutimaris +0.001297 1 0 147 1.24 0.000274 2873978 genus Phycocomes +0.001297 1 1 147 1.24 0.000274 2056810 species Phycocomes zhengii +0.001297 1 0 26 1.12 1.125e-05 2211638 genus Limimaricola +0.001297 1 1 10 1.3 2.214e-05 1343159 species Limimaricola soesokkakensis +0.001297 1 0 25 1.12 8.33e-06 205889 genus Albidovulum +0.001297 1 0 24 1.12 9.071e-06 2623499 no rank unclassified Albidovulum +0.001297 1 1 24 1.12 1.239e-05 1872424 species Albidovulum sp. +0.001297 1 0 10 1.1 1.3e-05 2047740 genus Rhodosalinus +0.001297 1 0 7 1.14 1.539e-05 2630183 no rank unclassified Rhodosalinus +0.001297 1 1 7 1.14 1.539e-05 2259333 species Rhodosalinus sp. E84 +0.001297 1 0 16 1.12 1.293e-05 1775705 genus Frigidibacter +0.001297 1 0 7 1 9.351e-06 2641805 no rank unclassified Frigidibacter +0.001297 1 1 7 1 9.351e-06 2586418 species Frigidibacter sp. +0.001297 1 0 13 1.31 3.481e-06 1541822 genus Pseudophaeobacter +0.001297 1 0 13 1.31 4.93e-06 2637024 no rank unclassified Pseudophaeobacter +0.001297 1 1 13 1.31 4.93e-06 1971739 species Pseudophaeobacter sp. +0.001297 1 0 5 1 1.257e-05 1470577 genus Paenirhodobacter +0.001297 1 1 5 1 1.257e-05 1105367 species Paenirhodobacter enshiensis +0.001297 1 0 52 1.19 5.836e-06 121820 genus Roseinatronobacter +0.001297 1 1 20 1 2.438e-05 393481 species Roseinatronobacter monicus +0.009078 7 1 432 1.12 2.374e-06 2854170 family Roseobacteraceae +0.002594 2 0 50 1.04 8.539e-06 263377 genus Salipiger +0.001297 1 1 9 1 1.665e-05 555512 species Salipiger marinus +0.001297 1 0 17 1.06 1.537e-05 2640570 no rank unclassified Salipiger +0.001297 1 1 17 1.06 1.537e-05 2078585 species Salipiger sp. +0.001297 1 0 2 1 5.159e-07 947567 genus Litoreibacter +0.001297 1 1 1 1 2.598e-06 491388 species Litoreibacter arenae +0.001297 1 0 1 1 1.59e-06 92944 genus Ketogulonicigenium +0.001297 1 1 1 1 2.92e-06 92945 species Ketogulonicigenium vulgare +0.001297 1 0 19 1.16 6.823e-06 599652 genus Tropicimonas +0.001297 1 1 3 1 4.883e-06 1031541 species Tropicimonas sediminicola +0.001297 1 0 17 1.12 6.26e-06 295418 genus Rubellimicrobium +0.001297 1 1 5 1 9.754e-06 1123067 species Rubellimicrobium mesophilum +2.047 1578 0 35218 1.15 0.00153 2800060 order Hyphomonadales +2.047 1578 1 35218 1.15 0.00153 69657 family Hyphomonadaceae +2.045 1577 2 35131 1.15 0.02885 2723 genus Hirschia +2.043 1575 1575 34965 1.15 0.08919 2724 species Hirschia baltica +0.02334 18 0 1359 1.2 1.532e-06 356 order Hyphomicrobiales +0.007781 6 0 231 1.38 1.714e-06 69277 family Phyllobacteriaceae +0.006484 5 0 190 1.38 2.192e-06 68287 genus Mesorhizobium +0.003891 3 0 123 1.26 2.435e-06 325217 no rank unclassified Mesorhizobium +0.002594 2 2 106 1.25 2.218e-06 1871066 species Mesorhizobium sp. +0.001297 1 1 16 1.31 2.479e-05 1827501 species Mesorhizobium sp. YM1C-6-2 +0.002594 2 2 17 2.76 3.478e-05 1777867 species Mesorhizobium jarvisii +0.001297 1 0 4 1.5 7.479e-07 274591 genus Hoeflea +0.001297 1 1 2 2 4.615e-06 714899 species Hoeflea halophila +0.006484 5 0 397 1.18 1.839e-06 82115 family Rhizobiaceae +0.005188 4 0 328 1.18 1.888e-06 227290 no rank Rhizobium/Agrobacterium group +0.002594 2 0 5 1.2 3.356e-06 1903858 genus Pseudorhizobium +0.002594 2 2 5 1.2 1.093e-05 1335061 species Pseudorhizobium flavum +0.002594 2 0 89 1.13 4.9e-06 1525371 genus Neorhizobium +0.002594 2 2 42 1.14 6.461e-05 67774 species Neorhizobium huautlense +0.001297 1 0 12 1.08 1.875e-06 323620 genus Shinella +0.001297 1 0 9 1.11 2.573e-06 2643062 no rank unclassified Shinella +0.001297 1 1 9 1.11 2.573e-06 1870904 species Shinella sp. +0.005188 4 0 359 1.17 1.147e-05 2821832 family Stappiaceae +0.003891 3 0 326 1.12 3.114e-05 150830 genus Roseibium +0.003891 3 0 326 1.12 3.99e-05 2629323 no rank unclassified Roseibium +0.003891 3 3 326 1.12 3.99e-05 1936156 species Roseibium sp. +0.001297 1 0 18 1.39 3.95e-05 500577 genus Nesiotobacter +0.001297 1 1 18 1.39 3.95e-05 197461 species Nesiotobacter exalbescens +0.001297 1 0 13 1.15 4.271e-07 41292 no rank unclassified Hyphomicrobiales +0.001297 1 1 9 1 4.287e-07 1909294 species Hyphomicrobiales bacterium +0.001297 1 0 6 1 4.373e-07 2844375 family Reyranellaceae +0.001297 1 0 6 1 4.373e-07 445219 genus Reyranella +0.001297 1 0 6 1 5.047e-07 2630009 no rank unclassified Reyranella +0.001297 1 1 6 1 5.571e-07 1929291 species Reyranella sp. +0.001297 1 0 12 1 4.484e-07 2831100 family Boseaceae +0.001297 1 0 12 1 4.484e-07 85413 genus Bosea +0.001297 1 0 4 1 1.862e-07 2653178 no rank unclassified Bosea +0.001297 1 1 4 1 1.902e-07 1871050 species Bosea sp. +0.01297 10 0 330 1.07 1.165e-06 204441 order Rhodospirillales +0.01167 9 0 255 1.02 2.421e-06 433 family Acetobacteraceae +0.01167 9 0 207 1.01 1.009e-05 125216 genus Roseomonas +0.01167 9 9 199 1.02 0.0003718 1335062 species Roseomonas rhizosphaerae +0.001297 1 0 9 1.89 2.745e-06 2813951 family Terasakiellaceae +0.001297 1 0 9 1.89 2.745e-06 196080 genus Terasakiella +0.001297 1 1 8 2 8.711e-06 1867952 species Candidatus Terasakiella magnetica +0.009078 7 0 351 1.37 1.131e-06 204457 order Sphingomonadales +0.006484 5 0 261 1.39 1.104e-06 41297 family Sphingomonadaceae +0.005188 4 0 169 1.52 3.53e-06 165696 genus Novosphingobium +0.002594 2 2 13 4.77 1.333e-05 1778672 species Novosphingobium flavum +0.001297 1 0 114 1.18 3.998e-06 2644732 no rank unclassified Novosphingobium +0.001297 1 1 114 1.18 3.998e-06 1874826 species Novosphingobium sp. +0.001297 1 1 36 1.5 5.941e-05 1348853 species Novosphingobium malaysiense +0.001297 1 0 49 1.27 1.502e-06 165695 genus Sphingobium +0.001297 1 0 44 1.25 2.723e-06 2611147 no rank unclassified Sphingobium +0.001297 1 1 44 1.25 2.723e-06 1912891 species Sphingobium sp. +0.002594 2 0 74 1.3 9.218e-05 2844881 family Zymomonadaceae +0.002594 2 0 74 1.3 9.218e-05 541 genus Zymomonas +0.002594 2 2 74 1.3 9.218e-05 542 species Zymomonas mobilis +0.007781 6 0 225 1.25 2.726e-06 204458 order Caulobacterales +0.007781 6 1 224 1.25 2.853e-06 76892 family Caulobacteraceae +0.003891 3 0 64 1 2.756e-06 41275 genus Brevundimonas +0.003891 3 0 64 1 5.086e-06 2622653 no rank unclassified Brevundimonas +0.003891 3 3 64 1 5.086e-06 1871086 species Brevundimonas sp. +0.001297 1 0 147 1.37 5.861e-06 75 genus Caulobacter +0.001297 1 0 145 1.38 8.543e-06 2648921 no rank unclassified Caulobacter +0.001297 1 1 144 1.38 9.484e-06 78 species Caulobacter sp. +0.001297 1 0 7 1.14 4.307e-07 20 genus Phenylobacterium +0.001297 1 1 1 1 1.17e-06 284016 species Phenylobacterium zucineum +0.0817 63 0 3142 1.16 2.681e-06 28216 class Betaproteobacteria +0.03372 26 1 1427 1.21 1.621e-06 80840 order Burkholderiales +0.01167 9 0 305 1.1 1.236e-06 80864 family Comamonadaceae +0.01038 8 0 159 1.08 1.154e-05 174951 genus Ramlibacter +0.01038 8 0 157 1.07 1.472e-05 2617605 no rank unclassified Ramlibacter +0.01038 8 8 157 1.07 1.472e-05 1917967 species Ramlibacter sp. +0.001297 1 0 23 1.17 5.814e-07 34072 genus Variovorax +0.001297 1 0 14 1 4.72e-07 663243 no rank unclassified Variovorax +0.001297 1 1 14 1 4.72e-07 1871043 species Variovorax sp. +0.01038 8 0 647 1.26 2.249e-06 119060 family Burkholderiaceae +0.009078 7 0 402 1.29 1.33e-05 1827195 genus Caballeronia +0.006484 5 5 382 1.29 0.00036 2010198 species Caballeronia mineralivorans +0.001297 1 0 2 1 4.481e-07 2646786 no rank unclassified Caballeronia +0.001297 1 1 2 1 4.481e-07 1931223 species Caballeronia sp. +0.001297 1 1 12 1.33 3.93e-06 196367 species Caballeronia sordidicola +0.001297 1 0 104 1.38 1.022e-06 1822464 genus Paraburkholderia +0.001297 1 1 55 1.58 6.676e-05 487049 species Paraburkholderia rhynchosiae +0.003891 3 3 35 1.34 4.741e-07 224471 no rank Burkholderiales genera incertae sedis +0.002594 2 0 158 1.19 1.353e-05 995019 family Sutterellaceae +0.002594 2 0 153 1.19 5.126e-05 1980697 genus Duodenibacillus +0.002594 2 0 153 1.19 5.569e-05 2645598 no rank unclassified Duodenibacillus +0.002594 2 2 153 1.19 5.569e-05 1980700 species Duodenibacillus sp. +0.002594 2 1 161 1.32 1.744e-06 506 family Alcaligenaceae +0.001297 1 0 20 1.1 6.992e-07 222 genus Achromobacter +0.001297 1 1 2 1.5 8.725e-07 85698 species Achromobacter xylosoxidans +0.001297 1 0 68 1.13 4.794e-07 75682 family Oxalobacteraceae +0.001297 1 0 9 1.11 7.21e-07 963 genus Herbaspirillum +0.001297 1 1 2 1 3.437e-06 2014887 species Herbaspirillum robiniae +0.02853 22 1 828 1.01 1.448e-05 206351 order Neisseriales +0.02723 21 0 764 1 3.067e-05 481 family Neisseriaceae +0.02723 21 19 708 1 6.239e-05 482 genus Neisseria +0.001297 1 1 129 1 0.0006191 487 species Neisseria meningitidis +0.001297 1 1 59 1 0.0003699 1906581 species Neisseria bergeri +0.01427 11 0 547 1.32 8.698e-06 206389 order Rhodocyclales +0.007781 6 0 274 1.25 1.061e-05 75787 family Rhodocyclaceae +0.006484 5 0 262 1.25 3.225e-05 551759 genus Aromatoleum +0.003891 3 3 66 1.23 0.0001095 59406 species Aromatoleum evansii +0.001297 1 1 59 1.41 0.0001547 200254 species Aromatoleum buckelii +0.001297 1 1 83 1.07 0.0002423 182180 species Aromatoleum anaerobium +0.001297 1 0 1 2 6.28e-07 1769726 genus Niveibacterium +0.001297 1 0 1 2 1.003e-06 2648924 no rank unclassified Niveibacterium +0.001297 1 1 1 2 1.003e-06 2017444 species Niveibacterium sp. +0.003891 3 0 88 1.35 4.277e-06 2008794 family Zoogloeaceae +0.001297 1 0 10 1 2.586e-06 349 genus Zoogloea +0.001297 1 1 4 1 7.446e-06 350 species Zoogloea ramigera +0.001297 1 0 16 1.25 1.72e-06 33057 genus Thauera +0.001297 1 0 11 1.27 2.366e-06 2609274 no rank unclassified Thauera +0.001297 1 1 11 1.27 2.366e-06 1905334 species Thauera sp. +0.001297 1 0 60 1.43 1.119e-05 12960 genus Azoarcus +0.001297 1 0 16 1.44 8.913e-06 2629479 no rank unclassified Azoarcus +0.001297 1 1 16 1.44 8.913e-06 29544 species Azoarcus sp. +0.002594 2 0 181 1.4 1.156e-05 2008795 family Azonexaceae +0.002594 2 0 178 1.4 1.425e-05 146936 genus Azonexus +0.002594 2 0 177 1.41 1.556e-05 2649329 no rank unclassified Azonexus +0.002594 2 2 177 1.41 1.556e-05 1872668 species Azonexus sp. +0.003891 3 0 220 1.11 2.42e-06 32003 order Nitrosomonadales +0.003891 3 0 201 1.11 9.112e-06 32011 family Methylophilaceae +0.003891 3 0 196 1.12 9.74e-05 404 genus Methylobacillus +0.003891 3 0 194 1.12 0.0005272 2647660 no rank unclassified Methylobacillus +0.003891 3 3 194 1.12 0.0005272 1848039 species Methylobacillus sp. MM3 +0.001297 1 0 13 1.46 2.666e-07 33809 no rank unclassified Betaproteobacteria +0.001297 1 1 10 1.5 3.031e-07 1891241 species Betaproteobacteria bacterium +0.03502 27 0 999 1.15 1.468e-06 68525 subphylum delta/epsilon subdivisions +0.02464 19 0 466 1.03 5.019e-06 29547 class Epsilonproteobacteria +0.02464 19 0 466 1.03 5.432e-06 213849 order Campylobacterales +0.02464 19 0 435 1.03 2.167e-05 72293 family Helicobacteraceae +0.02464 19 0 435 1.03 2.358e-05 209 genus Helicobacter +0.02464 19 19 399 1.03 0.0003217 210 species Helicobacter pylori +0.01038 8 0 533 1.26 9.068e-07 28221 class Deltaproteobacteria +0.009078 7 0 429 1.28 2.666e-06 29 order Myxococcales +0.009078 7 0 418 1.28 7.564e-06 80811 suborder Cystobacterineae +0.009078 7 0 411 1.28 1.26e-05 31 family Myxococcaceae +0.005188 4 0 336 1.25 2.275e-05 83461 genus Corallococcus +0.001297 1 1 116 1.39 0.000146 2316736 species Corallococcus exercitus +0.001297 1 1 61 1.16 7.104e-05 2316728 species Corallococcus carmarthensis +0.001297 1 1 38 1.21 4.817e-05 2316722 species Corallococcus aberystwythensis +0.001297 1 1 38 1.18 4.795e-05 2316720 species Corallococcus interemptor +0.002594 2 0 67 1.49 5.081e-06 32 genus Myxococcus +0.002594 2 0 53 1.57 7.553e-06 2648731 no rank unclassified Myxococcus +0.002594 2 2 53 1.57 7.553e-06 1929279 species Myxococcus sp. +0.001297 1 0 8 1 4.936e-06 224458 genus Pyxidicoccus +0.001297 1 1 8 1 4.936e-06 394095 species Pyxidicoccus fallax +0.001297 1 0 42 1.17 6.475e-07 213115 order Desulfovibrionales +0.001297 1 0 18 1.06 3.6e-07 194924 family Desulfovibrionaceae +0.001297 1 0 9 1.11 2.936e-07 872 genus Desulfovibrio +0.001297 1 0 9 1.11 7.081e-07 2593640 no rank unclassified Desulfovibrio +0.001297 1 1 8 1 1.159e-06 885 species Desulfovibrio sp. +13.28 10243 0 275498 1.13 0.0001087 1783270 clade FCB group +13.28 10243 0 275498 1.13 0.0001175 68336 clade Bacteroidetes/Chlorobi group +13.28 10243 4 275110 1.13 0.0001243 976 phylum Bacteroidetes +13.09 10095 2 268725 1.14 0.0004027 200643 class Bacteroidia +13.09 10092 274 268635 1.13 0.00047 171549 order Bacteroidales +3.954 3049 0 59291 1.26 0.002529 171551 family Porphyromonadaceae +3.953 3048 271 58852 1.27 0.007439 836 genus Porphyromonas +3.6 2776 2776 46009 1.27 0.1754 837 species Porphyromonas gingivalis +0.001297 1 1 48 1.29 0.0001724 36875 species Porphyromonas canoris +0.001297 1 0 33 1.24 5.406e-06 361210 no rank unclassified Porphyromonadaceae +0.001297 1 1 32 1.25 9.121e-05 1658779 species Porphyromonadaceae bacterium H1 +3.111 2399 0 65898 1.1 0.003701 2005525 family Tannerellaceae +3.11 2398 17 65813 1.1 0.004099 375288 genus Parabacteroides +3.085 2379 2379 61796 1.11 0.04586 823 species Parabacteroides distasonis +0.002594 2 2 62 1 0.0001391 871327 species Parabacteroides chinchillae +0.001297 1 0 80 1.07 4.57e-05 195950 genus Tannerella +0.001297 1 1 78 1.08 7.071e-05 28112 species Tannerella forsythia +2.823 2177 8 67825 1.11 0.0004346 171552 family Prevotellaceae +2.806 2164 711 66708 1.11 0.0005123 838 genus Prevotella +0.9882 762 762 22824 1.11 0.02973 165179 species Prevotella copri +0.5551 428 0 17391 1.11 0.0001634 2638335 no rank unclassified Prevotella +0.5551 428 428 17391 1.11 0.0001634 59823 species Prevotella sp. +0.3333 257 257 5445 1.03 0.01056 28132 species Prevotella melaninogenica +0.003891 3 3 105 1.62 0.0003078 515414 species Prevotella falsenii +0.002594 2 2 118 1 0.0003278 470565 species Prevotella histicola +0.001297 1 1 47 1 0.0001264 28129 species Prevotella denticola +0.003891 3 0 467 1.04 0.0001674 577309 genus Paraprevotella +0.003891 3 0 466 1.05 0.0003003 2619893 no rank unclassified Paraprevotella +0.003891 3 3 466 1.05 0.0003003 2049036 species Paraprevotella sp. +0.002594 2 0 71 1.42 3.176e-05 1283313 genus Alloprevotella +0.002594 2 0 66 1.45 4.714e-05 2624623 no rank unclassified Alloprevotella +0.002594 2 2 59 1.44 7.378e-05 1872471 species Alloprevotella sp. +2.577 1987 16 59427 1.07 0.0008367 815 family Bacteroidaceae +2.541 1959 259 57695 1.07 0.001151 816 genus Bacteroides +1.765 1361 1361 34534 1.05 0.06338 818 species Bacteroides thetaiotaomicron +0.367 283 0 13373 1.06 0.0006238 2646097 no rank unclassified Bacteroides +0.367 283 283 13373 1.06 0.0006975 29523 species Bacteroides sp. +0.04539 35 35 894 1.04 0.001112 820 species Bacteroides uniformis +0.01167 9 9 339 1.06 0.0002885 329854 species Bacteroides intestinalis +0.01038 8 8 380 1.03 0.0007082 1871006 species Bacteroides congonensis +0.003891 3 3 123 1.07 0.000141 85831 species Bacteroides acidifaciens +0.001297 1 1 217 1.01 0.0004166 691816 species Bacteroides rodentium +0.01427 11 1 675 1.03 3.896e-05 909656 genus Phocaeicola +0.01297 10 0 596 1.03 5.076e-05 2762211 no rank unclassified Phocaeicola +0.01297 10 10 596 1.03 5.076e-05 2773926 species Phocaeicola sp. +0.001297 1 0 83 1 3.138e-05 45253 no rank unclassified Bacteroidaceae +0.001297 1 1 83 1 3.138e-05 2212467 species Bacteroidaceae bacterium +0.2594 200 0 4859 1.03 0.0001964 171550 family Rikenellaceae +0.2594 200 22 4843 1.03 0.0002708 239759 genus Alistipes +0.2231 172 172 3738 1.02 0.01123 214856 species Alistipes finegoldii +0.007781 6 0 325 1.04 2.933e-05 2608932 no rank unclassified Alistipes +0.007781 6 6 325 1.04 3.135e-05 1872444 species Alistipes sp. +0.003891 3 0 167 1.57 1.372e-06 185291 no rank unclassified Bacteroidales +0.003891 3 3 54 2.57 0.0001308 1633200 species Bacteroidales bacterium Barb4 +0.002594 2 0 61 1.46 2.775e-06 2005520 family Dysgonomonadaceae +0.002594 2 0 58 1.48 2.502e-05 1784836 genus Fermentimonas +0.002594 2 2 54 1.48 0.0001509 1562970 species Fermentimonas caenicola +0.001297 1 0 68 1.01 7.306e-06 1853231 family Odoribacteraceae +0.001297 1 0 67 1.01 1.753e-05 283168 genus Odoribacter +0.001297 1 0 66 1 2.23e-05 2641225 no rank unclassified Odoribacter +0.001297 1 1 66 1 2.23e-05 1965233 species Odoribacter sp. +0.001297 1 0 13 1.54 2.645e-07 1970189 order Marinilabiliales +0.001297 1 0 7 2 8.185e-07 1573805 family Marinifilaceae +0.001297 1 0 7 2 1.956e-06 866673 genus Marinifilum +0.001297 1 0 7 2 4.053e-06 2642519 no rank unclassified Marinifilum +0.001297 1 1 7 2 5.848e-06 2033137 species Marinifilum sp. +0.1504 116 0 2789 1.11 9.601e-06 768503 class Cytophagia +0.1504 116 0 2789 1.11 9.64e-06 768507 order Cytophagales +0.1504 116 1 2730 1.11 5.966e-05 563798 family Cyclobacteriaceae +0.1491 115 4 2676 1.11 0.0007229 390846 genus Echinicola +0.144 111 111 2488 1.12 0.004388 390884 species Echinicola vietnamensis +0.03372 26 0 1042 1.25 1.606e-06 117743 class Flavobacteriia +0.03372 26 0 1042 1.25 1.619e-06 200644 order Flavobacteriales +0.03242 25 0 926 1.24 2.024e-06 49546 family Flavobacteriaceae +0.01686 13 0 369 1.17 6.963e-05 292691 genus Gramella +0.01686 13 13 369 1.17 0.0008558 1028746 species Gramella aestuarii +0.01427 11 0 267 1.43 1.872e-06 237 genus Flavobacterium +0.01427 11 11 252 1.45 0.000161 96345 species Flavobacterium psychrophilum +0.001297 1 0 7 1.29 1.153e-06 283735 genus Leeuwenhoekiella +0.001297 1 1 7 1.29 1.524e-05 1655491 species Leeuwenhoekiella nanhaiensis +0.001297 1 0 108 1.26 1.053e-06 2762318 family Weeksellaceae +0.001297 1 0 96 1.28 1.118e-06 2782232 no rank Chryseobacterium group +0.001297 1 0 96 1.28 1.301e-06 59732 genus Chryseobacterium +0.001297 1 1 6 1 1.573e-05 741074 species Chryseobacterium oncorhynchi +0.002594 2 0 117 1.32 6.201e-07 1853228 class Chitinophagia +0.002594 2 0 117 1.32 6.249e-07 1853229 order Chitinophagales +0.002594 2 0 117 1.32 6.377e-07 563835 family Chitinophagaceae +0.002594 2 0 95 1.24 4.619e-06 504481 genus Sediminibacterium +0.002594 2 0 95 1.24 5.198e-06 2635961 no rank unclassified Sediminibacterium +0.002594 2 2 95 1.24 5.198e-06 1917865 species Sediminibacterium sp. +2.934 2262 0 48116 1.33 0.002715 200918 phylum Thermotogae +2.934 2262 1 48107 1.33 0.002955 188708 class Thermotogae +2.932 2261 1 48018 1.33 0.006484 2419 order Thermotogales +2.931 2260 1 47950 1.33 0.01517 1643950 family Fervidobacteriaceae +2.93 2259 86 47804 1.33 0.02334 2422 genus Fervidobacterium +2.774 2139 2139 44805 1.22 0.115 93466 species Fervidobacterium pennivorans +0.04409 34 34 893 6.53 0.004338 2424 species Fervidobacterium nodosum +2.729 2104 0 44307 1.2 0.0002645 203691 phylum Spirochaetes +2.729 2104 0 44295 1.2 0.0002907 203692 class Spirochaetia +2.727 2103 0 44280 1.2 0.0004402 136 order Spirochaetales +2.727 2103 0 44248 1.2 0.001447 137 family Spirochaetaceae +2.727 2103 208 44200 1.2 0.03724 1911556 genus Sediminispirochaeta +2.458 1895 1895 33724 1.2 0.08629 55206 species Sediminispirochaeta smaragdinae +0.001297 1 0 13 2 2.311e-06 1643686 order Brachyspirales +0.001297 1 0 13 2 2.311e-06 143786 family Brachyspiraceae +0.001297 1 0 13 2 2.311e-06 29521 genus Brachyspira +0.001297 1 1 11 2 1.238e-05 1287055 species Brachyspira hampsonii +0.8897 686 0 15460 1.13 1.916e-05 1783257 clade PVC group +0.8897 686 0 15404 1.13 5.201e-05 74201 phylum Verrucomicrobia +0.8637 666 0 14819 1.13 0.000196 414999 class Opitutae +0.8637 666 0 14788 1.13 0.001464 415001 order Puniceicoccales +0.8637 666 1 14788 1.13 0.001626 415002 family Puniceicoccaceae +0.8624 665 0 14725 1.13 0.00929 442430 genus Coraliomargarita +0.8624 665 665 14721 1.13 0.03533 395922 species Coraliomargarita akajimensis +0.02594 20 0 537 1 4.752e-06 203494 class Verrucomicrobiae +0.02594 20 0 537 1 4.867e-06 48461 order Verrucomicrobiales +0.02594 20 0 523 1 2.921e-05 1647988 family Akkermansiaceae +0.02594 20 0 520 1 0.0001072 239934 genus Akkermansia +0.02594 20 20 511 1 0.0002585 239935 species Akkermansia muciniphila +0.5654 436 0 10016 1.11 3.246e-05 57723 phylum Acidobacteria +0.5654 436 0 9990 1.11 7.52e-05 204432 class Acidobacteriia +0.5642 435 0 9981 1.11 0.0001128 204433 order Acidobacteriales +0.5642 435 4 9978 1.11 0.0001137 204434 family Acidobacteriaceae +0.559 431 0 9691 1.11 0.002065 392733 genus Terriglobus +0.559 431 431 9668 1.11 0.005781 392734 species Terriglobus roseus +0.001297 1 0 1 1 3.613e-08 332160 order Bryobacterales +0.001297 1 0 1 1 5.235e-08 1470392 no rank unclassified Bryobacterales +0.001297 1 1 1 1 5.673e-08 2026791 species Bryobacterales bacterium +0.02334 18 0 800 1.22 6.599e-05 1930617 phylum Calditrichaeota +0.02334 18 0 800 1.22 0.0002259 1962850 class Calditrichia +0.02334 18 0 800 1.22 0.0002259 1962852 order Calditrichales +0.02334 18 0 800 1.22 0.0002259 1962854 family Calditrichaceae +0.02334 18 0 800 1.22 0.0002809 187144 genus Caldithrix +0.02334 18 0 800 1.22 0.0006007 2641444 no rank unclassified Caldithrix +0.02334 18 18 800 1.22 0.0006007 1962856 species Caldithrix sp. +0.001297 1 0 202 1.27 2.332e-06 49928 no rank unclassified Bacteria +0.001297 1 1 21 1.57 0.0001184 1635281 species bacterium 42_11 +0.001297 1 0 45 1.2 2.159e-06 32066 phylum Fusobacteria +0.001297 1 0 44 1.2 2.158e-06 203490 class Fusobacteriia +0.001297 1 0 44 1.2 2.167e-06 203491 order Fusobacteriales +0.001297 1 0 26 1.35 4.123e-06 1129771 family Leptotrichiaceae +0.001297 1 0 25 1.36 2.508e-05 34104 genus Streptobacillus +0.001297 1 1 5 1 3.239e-05 1712031 species Streptobacillus notomytis +1.609 1241 0 28101 1.17 5.366e-05 2157 superkingdom Archaea +1.609 1241 0 28058 1.17 9.136e-05 28890 phylum Euryarchaeota +1.609 1241 0 28031 1.17 0.0001315 2290931 clade Stenosarchaea group +1.609 1241 8 28027 1.17 0.0001997 183963 class Halobacteria +1.599 1233 0 26746 1.17 0.0007376 1644060 order Natrialbales +1.599 1233 22 26746 1.17 0.0007376 1644061 family Natrialbaceae +0.7457 575 9 11382 1.21 0.004436 29287 genus Natronococcus +0.734 566 566 10727 1.21 0.02391 29288 species Natronococcus occultus +0.4837 373 4 7504 1.14 0.009466 2256 genus Natronobacterium +0.4786 369 369 7406 1.14 0.01942 44930 species Natronobacterium gregoryi +0.3411 263 9 6289 1.12 0.004128 332951 genus Halovivax +0.3281 253 253 5268 1.12 0.01523 387341 species Halovivax ruber +0.001297 1 1 981 1.11 0.002441 332953 species Halovivax asiaticus +0.7159 552 0 7228 1.12 1.179e-06 2759 superkingdom Eukaryota +0.7107 548 3 7131 1.12 1.236e-06 33154 clade Opisthokonta +0.7068 545 0 7045 1.11 4.778e-06 4751 kingdom Fungi +0.7068 545 1 7044 1.11 4.921e-06 451864 subkingdom Dikarya +0.3696 285 0 5589 1.11 4.991e-06 4890 phylum Ascomycota +0.3696 285 0 5589 1.11 5.049e-06 716545 clade saccharomyceta +0.3696 285 0 5585 1.11 4.607e-05 147537 subphylum Saccharomycotina +0.3696 285 0 5585 1.11 4.607e-05 4891 class Saccharomycetes +0.3696 285 0 5585 1.11 4.607e-05 4892 order Saccharomycetales +0.3696 285 1 5574 1.11 0.0001234 4893 family Saccharomycetaceae +0.3683 284 274 5530 1.11 0.0006308 4930 genus Saccharomyces +0.006484 5 5 205 1.2 0.0007625 27292 species Saccharomyces pastorianus +0.003891 3 0 123 1.08 0.001159 4932 species Saccharomyces cerevisiae +0.003891 3 3 123 1.08 0.001159 559292 subspecies Saccharomyces cerevisiae S288C +0.002594 2 0 79 1.1 0.00117 2620749 no rank unclassified Saccharomyces +0.002594 2 2 79 1.1 0.00117 252598 species Saccharomyces boulardii (nom. inval.) +0.3359 259 1 1442 1.12 4.628e-06 5204 phylum Basidiomycota +0.3346 258 0 1431 1.12 6.153e-06 5302 subphylum Agaricomycotina +0.3346 258 2 1416 1.12 3.488e-05 155616 class Tremellomycetes +0.332 256 0 1388 1.11 4.768e-05 5234 order Tremellales +0.332 256 2 1377 1.11 5.701e-05 1884633 family Cryptococcaceae +0.3113 240 31 1118 1.11 9.593e-05 5206 genus Cryptococcus +0.2114 163 0 621 1.09 0.0003191 1897064 species group Cryptococcus neoformans species complex +0.2114 163 0 621 1.09 0.0003191 5207 species Cryptococcus neoformans +0.2114 163 0 621 1.09 0.0003191 40410 subspecies Cryptococcus neoformans var. neoformans +0.2114 163 163 621 1.09 0.0003191 214684 strain Cryptococcus neoformans var. neoformans JEC21 +0.05966 46 30 246 1.07 5.497e-05 1884637 species group Cryptococcus gattii species complex +0.009078 7 0 37 1.03 2.88e-05 1859096 species Cryptococcus gattii VGII +0.009078 7 7 37 1.03 2.88e-05 294750 subspecies Cryptococcus gattii VGII R265 +0.006484 5 5 38 1.08 3.429e-05 2011032 species Cryptococcus cf. gattii +0.005188 4 0 25 1.28 2.182e-05 37769 species Cryptococcus gattii VGI +0.005188 4 4 25 1.28 2.182e-05 367775 subspecies Cryptococcus gattii WM276 +0.01816 14 3 192 1.1 1.537e-05 490731 genus Kwoniella +0.01427 11 11 150 1.03 6.391e-05 1734106 species Kwoniella shandongensis +0.005188 4 0 89 1.27 3.07e-06 554915 clade Amoebozoa +0.005188 4 0 89 1.27 3.581e-06 2605435 phylum Evosea +0.005188 4 0 89 1.27 1.11e-05 555406 clade Archamoebae +0.005188 4 0 89 1.27 1.11e-05 2682482 order Mastigamoebida +0.005188 4 0 89 1.27 1.11e-05 33084 family Entamoebidae +0.005188 4 0 89 1.27 1.11e-05 5758 genus Entamoeba +0.005188 4 0 89 1.27 5.354e-05 46681 species Entamoeba dispar +0.005188 4 4 89 1.27 5.354e-05 370354 subspecies Entamoeba dispar SAW760 +1.183 912 40 95642 1.28 9.943e-05 10239 superkingdom Viruses +0.9195 709 0 76191 1.29 0.0001871 2731341 clade Duplodnaviria +0.9195 709 0 76191 1.29 0.0001871 2731360 kingdom Heunggongvirae +0.9078 700 0 75249 1.28 0.0002011 2731618 phylum Uroviricota +0.9078 700 0 75249 1.28 0.0002012 2731619 class Caudoviricetes +0.9078 700 54 75249 1.28 0.0002012 28883 order Caudovirales +0.5499 424 69 52168 1.2 0.0003691 10699 family Siphoviridae +0.3009 232 93 25993 1.18 0.0004396 196894 no rank unclassified Siphoviridae +0.02853 22 22 3132 1.07 0.0892 2859526 species Enterococcus phage SEsuP-1 +0.02334 18 18 1318 2.09 0.06224 2782522 species Staphylococcus phage PhiSepi-HH3 +0.01816 14 14 2280 1.04 0.07627 10713 species Enterobacteria phage phi80 +0.01167 9 9 642 1.69 0.0122 2686384 species Lactobacillus phage JNU_P5 +0.01038 8 8 1064 1.2 0.06842 1458852 species Listeria phage LP-030-3 +0.009078 7 7 517 1.1 0.01346 2663264 species Pseudomonas phage AUS531phi +0.007781 6 6 464 1.3 0.01603 1868596 species Pseudomonas phage MD8 +0.006484 5 5 239 1.26 0.009602 347324 species Pseudomonas phage F10 +0.005188 4 4 358 1.2 0.002021 2735572 species Escherichia phage CMS-2020a +0.005188 4 4 377 1.11 0.009559 1754216 species Pseudomonas phage phi1 +0.005188 4 4 795 1 0.02295 12417 species Lactobacillus phage phiadh +0.005188 4 4 502 1.22 0.03213 1147140 species Salmonella phage SPN3UB +0.003891 3 3 37 1.73 0.3854 2751387 species Stx2a-converting phage Stx2_EH1910 +0.003891 3 3 224 1 0.005045 2686379 species Lactobacillus phage JNU_P1 +0.003891 3 3 84 2.52 0.002396 2510475 species Klebsiella phage ST101-KPC2phi6.3 +0.002594 2 2 94 1.16 0.003471 2829367 species Pseudomonas phage BUCT566 +0.002594 2 2 328 1.29 0.006494 1755689 species Pseudomonas phage YMC11/02/R656 +0.002594 2 2 108 1.19 0.007158 1591073 species Listeria phage vB_LmoS_293 +0.002594 2 2 108 1 0.003957 1542116 species Pseudomonas phage JBD68 +0.002594 2 2 234 1 0.008058 1115653 species Escherichia phage 1720a-02 +0.001297 1 1 62 1.45 0.002189 663241 species Enterococcus phage phiEf11 +0.001297 1 1 109 1.01 0.005926 40522 species Listeria phage A500 +0.001297 1 1 29 1 0.001165 40521 species Listeria phage A118 +0.001297 1 1 20 1 0.04695 291401 species Enterobacteria phage CP-1639 +0.001297 1 1 235 1 0.007648 2726968 species Acinetobacter phage 5W +0.001297 1 1 239 1 0.01698 2724332 species Escherichia phage Lys8385Vzw +0.001297 1 1 48 1 0.00779 2580353 species Pseudomonas phage UMP151 +0.001297 1 1 15 1 0.005695 2563500 species Pseudomonas phage vB_Pae_BR153a +0.001297 1 1 82 1 0.01237 2548196 species Streptococcus phage Javan48 +0.001297 1 1 32 1.34 0.001047 2547988 species Streptococcus phage Javan119 +0.001297 1 1 40 1 0.001176 1977997 species Phage apr34_1792 +0.001297 1 1 61 1 0.002334 1777052 species Pseudomonas phage JBD44 +0.001297 1 1 21 1 0.0103 1542110 species Pseudomonas phage F_TK1718sp/PAK +0.001297 1 1 9 1 0.0003867 1168549 species Salmonella phage vB_SosS_Oslo +0.001297 1 1 41 1 0.002089 1105171 species Bacteroides phage B124-14 +0.0428 33 6 4328 1.22 0.005841 2842522 subfamily Azeredovirinae +0.03502 27 8 3589 1.2 0.008961 1623298 genus Phietavirus +0.02075 16 16 1980 1.12 0.04047 320845 species Staphylococcus virus 55 +0.002594 2 0 84 1.26 0.05683 2846296 species Staphylococcus virus StauST398-5 +0.002594 2 2 84 1.26 0.05683 1308897 subspecies Staphylococcus phage StauST398-5 +0.001297 1 1 76 1.79 0.01331 320844 species Staphylococcus virus 71 +0.0428 33 2 4041 1.32 0.09626 186765 genus Lambdavirus +0.0402 31 1 3949 1.31 0.113 335795 no rank unclassified Lambdavirus +0.03631 28 28 3506 1.32 0.3366 2024003 species Escherichia phage DN1 +0.001297 1 1 49 1 0.01004 10743 species Phage 21 +0.001297 1 1 299 1.23 0.1275 10738 species Enterobacteria phage PA-2 +0.03113 24 7 3263 1.26 0.1008 2843432 genus Pankowvirus +0.01297 10 0 1012 1.44 0.3657 2844169 species Escherichia virus 1717 +0.01297 10 10 1012 1.44 0.3657 563769 subspecies Stx2-converting phage 1717 +0.007781 6 0 816 1.17 0.1066 2844135 species Enterobacteria virus YYZ2008 +0.007781 6 6 816 1.17 0.1066 564886 subspecies Enterobacteria phage YYZ-2008 +0.001297 1 0 247 1.15 0.07968 2844236 species Escherichia virus WGPS8 +0.001297 1 1 247 1.15 0.07968 1226263 subspecies Stx2-converting phage Stx2a_WGPS8 +0.01167 9 2 1484 1.13 0.006048 2842523 subfamily Bronfenbrennervirinae +0.009078 7 7 1025 1.13 0.01989 1623274 genus Biseptimavirus +0.007781 6 3 269 1.15 0.004457 1623287 genus Detrevirus +0.003891 3 3 190 1.22 0.01029 1129146 species Pseudomonas virus PMG1 +0.006484 5 0 368 1.02 0.001353 1623286 genus Casadabanvirus +0.006484 5 0 342 1 0.003641 2115965 no rank unclassified Casadabanvirus +0.003891 3 3 293 1 0.03039 2283028 species Pseudomonas phage YMC12/01/R24 +0.002594 2 2 47 1 0.1697 2563588 species Pseudomonas phage vB_Pae_CF74a +0.003891 3 3 388 1.12 0.02093 2843451 genus Sawaravirus +0.003891 3 0 318 1.14 0.0001951 1910976 subfamily Guernseyvirinae +0.003891 3 0 318 1.14 0.0004774 1910991 genus Jerseyvirus +0.003891 3 0 318 1.14 0.0009241 2025810 no rank unclassified Jerseyvirus +0.003891 3 3 318 1.14 0.06636 2831178 species Salmonella phage JD01 +0.002594 2 1 225 1 0.001498 1623299 genus Phifelvirus +0.001297 1 0 144 1 0.002578 1633151 species Enterococcus virus FL3 +0.001297 1 1 142 1 0.005244 673838 subspecies Enterococcus phage phiFL3B +0.001297 1 0 61 1.05 0.004514 2843420 genus Marienburgvirus +0.001297 1 0 22 1.14 0.02193 2844207 species Escherichia virus JLK2012 +0.001297 1 1 22 1.14 0.02193 1147722 subspecies Escherichia phage JLK-2012 +0.001297 1 0 39 1 0.001313 2843379 genus Fattrevirus +0.001297 1 0 39 1 0.001313 2845147 species Lactobacillus virus phiAT3 +0.001297 1 1 39 1 0.001313 279281 subspecies Lactobacillus phage phiAT3 +0.001297 1 0 6 1 5.912e-05 2842530 subfamily Trabyvirinae +0.001297 1 0 6 1 5.912e-05 2843051 genus Slepowronvirus +0.001297 1 0 6 1 0.0001908 2845521 species Listeria virus LP101 +0.001297 1 1 6 1 0.0001908 1458856 subspecies Listeria phage LP-101 +0.001297 1 0 186 1 0.001496 2842527 subfamily Hendrixvirinae +0.001297 1 0 186 1 0.0236 2843126 genus Wanchaivirus +0.001297 1 0 186 1 0.04326 2169920 species Escherichia virus HK106 +0.001297 1 1 186 1 0.04326 432198 subspecies Enterobacteria phage HK106 +0.001297 1 0 215 1 0.0009022 2560250 genus Vieuvirus +0.001297 1 0 209 1 0.001221 2576462 no rank unclassified Vieuvirus +0.001297 1 1 143 1 0.003125 1718841 species Acinetobacter phage Ab105-2phi +0.1829 141 2 11255 1.57 9.663e-05 10662 family Myoviridae +0.06614 51 4 4761 1.24 0.002343 857479 subfamily Peduovirinae +0.03242 25 1 2673 1.28 0.01035 2732980 genus Felsduovirus +0.02983 23 0 2592 1.29 0.09503 2844176 species Escherichia virus 500465-1 +0.02983 23 23 2592 1.29 0.09503 2716351 subspecies Escherichia phage 500465-1 +0.001297 1 1 24 1.5 0.001596 194701 species Salmonella virus Fels2 +0.01816 14 0 1210 1.29 0.02676 2733085 genus Xuanwuvirus +0.01167 9 0 957 1.25 0.04522 2844177 species Escherichia virus 500465-2 +0.01167 9 9 957 1.25 0.04522 2716352 subspecies Escherichia phage 500465-2 +0.006484 5 0 246 1.43 0.03245 2844179 species Escherichia virus 520873 +0.006484 5 5 246 1.43 0.03245 2716354 subspecies Escherichia phage 520873 +0.007781 6 1 439 1.05 0.002524 140410 genus Peduovirus +0.005188 4 0 276 1.08 0.005236 2563343 no rank unclassified Peduovirus +0.005188 4 4 276 1.08 0.01564 1567486 species Enterobacteria phage P88 +0.001297 1 0 108 1 0.01106 2560457 species Escherichia virus fiAA91ss +0.001297 1 1 108 1 0.01106 1357825 subspecies Enterobacteria phage fiAA91-ss +0.002594 2 0 6 1 5.746e-05 2732977 genus Citexvirus +0.002594 2 0 6 1 0.001596 2748758 no rank unclassified Citexvirus +0.002594 2 2 6 1 0.002845 1542106 species Pseudomonas phage F_HA1961sp/Pa1641 +0.05188 40 1 1346 4.15 0.00345 186789 genus Punavirus +0.04669 36 36 1021 5.11 0.00521 10678 species Escherichia virus P1 +0.002594 2 0 77 1 0.003178 2560732 species Salmonella virus SJ46 +0.002594 2 2 77 1 0.003178 1815968 subspecies Salmonella phage SJ46 +0.001297 1 0 183 1.04 0.005725 2560452 species Escherichia virus RCS47 +0.001297 1 1 183 1.04 0.005725 1590550 subspecies Escherichia phage RCS47 +0.03242 25 11 2674 1.17 7.077e-05 196896 no rank unclassified Myoviridae +0.007781 6 6 519 1.37 0.2629 282785 species Phage TP +0.006484 5 5 501 1.04 0.005516 2014434 species Escherichia phage D6 +0.001297 1 1 115 1.39 0.006958 66284 species Shigella phage SfII +0.001297 1 1 70 1.19 0.004456 55884 species Enterobacteria phage SfV +0.001297 1 1 245 1.03 0.02121 1225789 species Enterobacteria phage SfI +0.01297 10 0 1194 1.13 0.03271 2560108 genus Brunovirus +0.01297 10 0 1194 1.13 0.03271 2560731 species Salmonella virus SEN34 +0.01297 10 10 1194 1.13 0.03271 1647463 subspecies Salmonella phage SEN34 +0.007781 6 0 253 1.95 0.0002199 2842517 subfamily Emmerichvirinae +0.007781 6 0 253 1.95 0.0004096 2842588 genus Ceceduovirus +0.007781 6 0 253 1.95 0.001489 2852241 no rank unclassified Ceceduovirus +0.007781 6 6 253 1.95 0.003116 2759193 species Aeromonas phage AP1 +0.002594 2 0 27 1.19 5.659e-05 1925779 genus Nankokuvirus +0.002594 2 2 26 1.15 0.0001827 1925780 species Pseudomonas virus Ab03 +0.002594 2 0 186 1.3 1.181e-05 1198136 subfamily Tevenvirinae +0.001297 1 0 50 2 6.381e-05 1913652 genus Mosigvirus +0.001297 1 0 50 2 0.0001103 2562699 no rank unclassified Mosigvirus +0.001297 1 1 50 2 0.002421 2502414 species Escherichia phage vB_EcoM_G2285 +0.001297 1 1 112 1.04 6.077e-05 10663 genus Tequatrovirus +0.001297 1 0 173 1.18 0.004726 2733114 genus Mushuvirus +0.001297 1 0 173 1.18 0.004726 2734119 species Faecalibacterium virus Mushu +0.001297 1 1 173 1.18 0.004726 2070185 subspecies Faecalibacterium phage FP_Mushu +0.001297 1 0 222 1 0.004607 2733108 genus Lagaffevirus +0.001297 1 0 222 1 0.004607 2734112 species Faecalibacterium virus Lagaffe +0.001297 1 1 222 1 0.004607 2070183 subspecies Faecalibacterium phage FP_Lagaffe +0.001297 1 0 141 1 5.962e-05 1985285 subfamily Ounavirinae +0.001297 1 0 141 1 0.0005604 2053698 no rank unclassified Ounavirinae +0.001297 1 1 141 1 0.005895 694060 species Staphylococcus phage SA1 +0.1038 80 4 7400 1.37 0.0001733 10744 family Podoviridae +0.04669 36 16 2993 1.53 0.0079 1981156 subfamily Sepvirinae +0.01427 11 0 706 1.61 0.004428 1981159 genus Oslovirus +0.01297 10 0 657 1.64 0.01066 2108460 no rank unclassified Oslovirus +0.01297 10 10 523 1.75 0.01129 2070178 species Escherichia phage GER2 +0.001297 1 0 22 1 0.02348 1981169 species Escherichia virus TL2011 +0.001297 1 1 22 1 0.02348 1124655 subspecies Escherichia phage TL-2011c +0.01038 8 7 904 1.33 0.01185 1981157 genus Traversvirus +0.001297 1 0 44 1 0.004449 2844180 species Escherichia virus 86 +0.001297 1 1 44 1 0.004449 379329 subspecies Stx2-converting phage 86 +0.001297 1 0 74 1 0.00227 1981158 genus Diegovirus +0.001297 1 0 72 1 0.01638 1981165 species Shigella virus 7502Stx +0.001297 1 1 72 1 0.01638 1416032 subspecies Shigella phage 75/02 Stx +0.03761 29 8 3138 1.24 0.005648 186794 genus Lederbergvirus +0.02205 17 7 1754 1.19 0.004433 329158 no rank unclassified Lederbergvirus +0.005188 4 4 235 1.23 0.01012 1647458 species Salmonella phage SEN22 +0.002594 2 2 83 2.23 0.004736 2746235 species Escherichia phage vB_EcoP_Kapi1 +0.002594 2 2 176 1 0.01265 2045361 species Escherichia phage APC_JM3.2 +0.002594 2 2 694 1.12 0.0135 1090133 species Enterobacteria phage IME10 +0.005188 4 4 575 1.27 0.01206 10754 species Salmonella virus P22 +0.007781 6 1 378 1.23 0.001886 1720324 genus Hollowayvirus +0.005188 4 4 165 1.11 0.005213 1273707 species Pseudomonas virus H66 +0.001297 1 0 118 1 0.001427 2562664 no rank unclassified Hollowayvirus +0.001297 1 1 99 1 0.005585 2860997 species Pseudomonas phage PA8 +0.005188 4 0 371 1.32 0.00123 542960 genus Uetakevirus +0.005188 4 0 371 1.32 0.002447 1231360 no rank unclassified Uetakevirus +0.005188 4 4 366 1.32 0.01422 1124654 species Escherichia phage TL-2011b +0.001297 1 0 233 1.17 6.815e-06 196895 no rank unclassified Podoviridae +0.001297 1 1 31 1 0.0007054 2510471 species Klebsiella phage ST512-KPC3phi13.3 +0.001297 1 0 50 1.52 3.248e-06 2560065 family Herelleviridae +0.001297 1 0 38 1.47 4.721e-06 2560070 subfamily Bastillevirinae +0.001297 1 0 8 1 1.41e-05 1918010 genus Bastillevirus +0.001297 1 0 8 1 3.411e-05 2315196 no rank unclassified Bastillevirus +0.001297 1 1 8 1 0.0009028 2282408 species Bacillus phage Maceta +0.01167 9 0 944 1.61 2.861e-05 2731361 phylum Peploviricota +0.01167 9 0 944 1.61 2.861e-05 2731363 class Herviviricetes +0.01167 9 0 944 1.61 2.861e-05 548681 order Herpesvirales +0.01167 9 0 944 1.61 3.27e-05 10292 family Herpesviridae +0.01167 9 0 935 1.62 8.081e-05 10357 subfamily Betaherpesvirinae +0.01167 9 0 935 1.62 0.0001562 10358 genus Cytomegalovirus +0.01038 8 8 783 1.65 0.0003119 10359 species Human betaherpesvirus 5 +0.001297 1 1 152 1.47 0.0003854 47929 species Macacine betaherpesvirus 3 +0.1945 150 53 13859 1.21 0.0002668 12333 no rank unclassified bacterial viruses +0.05058 39 39 3891 1.28 0.186 2716355 species Escherichia phage 503046 +0.02334 18 18 1490 1.29 0.05535 2783517 species Escherichia phage 204576 +0.02334 18 18 3311 1.13 0.1106 129862 species Phage Gifsy-2 +0.02205 17 17 1867 1.24 0.05953 129861 species Phage Gifsy-1 +0.002594 2 2 269 1.07 0.01331 2859565 species Enterococcus phage VEsP-2 +0.001297 1 1 22 1 0.01401 356350 species Phage 258-320 +0.001297 1 1 191 1 0.1322 2558708 species Streptococcus satellite phage Javan449 +0.001297 1 1 67 1 0.001649 128975 species Salmonella phage Fels-1 +0.006484 5 0 444 1.01 1.139e-05 2731342 clade Monodnaviria +0.006484 5 0 431 1 0.0004848 2732090 kingdom Loebvirae +0.006484 5 0 431 1 0.0004848 2732410 phylum Hofneiviricota +0.006484 5 0 431 1 0.0004848 2732411 class Faserviricetes +0.006484 5 0 431 1 0.0004848 2732094 order Tubulavirales +0.006484 5 3 431 1 0.0005104 10860 family Inoviridae +0.001297 1 0 83 1 0.0001515 456491 no rank unclassified Inoviridae +0.001297 1 1 83 1 0.01283 2686285 species Pseudomonas phage pf8_ST274-AUS411 +0.001297 1 0 77 1 0.00601 2732875 genus Primolicivirus +0.001297 1 1 77 1 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Picornavirales +0.001297 1 0 20 1.85 9.652e-07 12058 family Picornaviridae +0.001297 1 0 20 1.85 1.591e-06 12059 genus Enterovirus +0.001297 1 1 20 1.85 1.107e-05 138950 species Enterovirus C +0.001297 1 0 63 1.35 3.295e-06 186616 no rank environmental samples +0.001297 1 1 16 1.69 1.073e-05 340016 species uncultured virus +0.6575 507 0 45700 1.63 0.006306 2787854 no rank other entries +0.6575 507 0 45700 1.63 0.006306 28384 no rank other sequences +0.6575 507 0 45700 1.63 0.006306 81077 no rank artificial sequences +0.6575 507 507 45700 1.63 0.006306 32630 species synthetic construct
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/krona.k2.int.tsv Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,73 @@ +24 Unclassified +0 x__root +0 x__root k__Viruses +0 x__root k__Viruses x__Duplodnaviria +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae p__Peploviricota +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae p__Peploviricota c__Herviviricetes +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae p__Peploviricota c__Herviviricetes o__Herpesvirales +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae p__Peploviricota c__Herviviricetes o__Herpesvirales f__Herpesviridae +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae p__Peploviricota c__Herviviricetes o__Herpesvirales f__Herpesviridae x__Alphaherpesvirinae +0 x__root k__Viruses x__Duplodnaviria x__Heunggongvirae p__Peploviricota c__Herviviricetes o__Herpesvirales f__Herpesviridae x__Alphaherpesvirinae 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x__Tetrapoda x__Amniota c__Mammalia x__Theria x__Eutheria x__Boreoeutheria x__Euarchontoglires o__Primates +0 x__root x__cellular_organisms k__Eukaryota x__Opisthokonta x__Metazoa x__Eumetazoa x__Bilateria x__Deuterostomia p__Chordata x__Craniata x__Vertebrata x__Gnathostomata x__Teleostomi x__Euteleostomi x__Sarcopterygii x__Dipnotetrapodomorpha x__Tetrapoda x__Amniota c__Mammalia x__Theria x__Eutheria x__Boreoeutheria x__Euarchontoglires o__Primates x__Haplorrhini +0 x__root x__cellular_organisms k__Eukaryota x__Opisthokonta x__Metazoa x__Eumetazoa x__Bilateria x__Deuterostomia p__Chordata x__Craniata x__Vertebrata x__Gnathostomata x__Teleostomi x__Euteleostomi x__Sarcopterygii x__Dipnotetrapodomorpha x__Tetrapoda x__Amniota c__Mammalia x__Theria x__Eutheria x__Boreoeutheria x__Euarchontoglires o__Primates x__Haplorrhini x__Simiiformes +0 x__root x__cellular_organisms k__Eukaryota x__Opisthokonta x__Metazoa x__Eumetazoa x__Bilateria x__Deuterostomia p__Chordata x__Craniata 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k__Eukaryota x__Sar x__Alveolata p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae g__Plasmodium +0 x__root x__cellular_organisms k__Eukaryota x__Sar x__Alveolata p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae g__Plasmodium x__Plasmodium_(Plasmodium) +0 x__root x__cellular_organisms k__Eukaryota x__Sar x__Alveolata p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae g__Plasmodium x__Plasmodium_(Plasmodium) s__Plasmodium_knowlesi +1 x__root x__cellular_organisms k__Eukaryota x__Sar x__Alveolata p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae g__Plasmodium x__Plasmodium_(Plasmodium) s__Plasmodium_knowlesi x__Plasmodium_knowlesi_strain_H
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/krona.k2.noint.tsv Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,36 @@ +24 Unclassified +0 k__Viruses +0 k__Viruses p__Peploviricota +0 k__Viruses p__Peploviricota c__Herviviricetes +0 k__Viruses p__Peploviricota c__Herviviricetes o__Herpesvirales +0 k__Viruses p__Peploviricota c__Herviviricetes o__Herpesvirales f__Herpesviridae +0 k__Viruses p__Peploviricota c__Herviviricetes o__Herpesvirales f__Herpesviridae g__Iltovirus +497 k__Viruses p__Peploviricota c__Herviviricetes o__Herpesvirales f__Herpesviridae g__Iltovirus s__Gallid_alphaherpesvirus_1 +0 k__Viruses p__Negarnaviricota +0 k__Viruses p__Negarnaviricota c__Monjiviricetes +0 k__Viruses p__Negarnaviricota c__Monjiviricetes o__Mononegavirales +0 k__Viruses p__Negarnaviricota c__Monjiviricetes o__Mononegavirales f__Paramyxoviridae +12 k__Viruses p__Negarnaviricota c__Monjiviricetes o__Mononegavirales f__Paramyxoviridae g__Avulavirus +15 k__Viruses p__Negarnaviricota c__Monjiviricetes o__Mononegavirales f__Paramyxoviridae g__Avulavirus s__Goose_paramyxovirus_SF02 +7 k__Viruses p__Negarnaviricota c__Monjiviricetes o__Mononegavirales f__Paramyxoviridae g__Avulavirus s__Avian_avulavirus_1 +1 k__Viruses p__Negarnaviricota c__Monjiviricetes o__Mononegavirales f__Paramyxoviridae g__Avulavirus s__Avian_avulavirus_12 +0 k__Bacteria +0 k__Bacteria p__Proteobacteria +0 k__Bacteria p__Proteobacteria c__Gammaproteobacteria +0 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales +0 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Moraxellaceae +0 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Moraxellaceae g__Acinetobacter +2 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Moraxellaceae g__Acinetobacter s__Acinetobacter_baumannii +0 k__Eukaryota +0 k__Eukaryota p__Chordata +0 k__Eukaryota p__Chordata c__Mammalia +0 k__Eukaryota p__Chordata c__Mammalia o__Primates +0 k__Eukaryota p__Chordata c__Mammalia o__Primates f__Hominidae +0 k__Eukaryota p__Chordata c__Mammalia o__Primates f__Hominidae g__Homo +1 k__Eukaryota p__Chordata c__Mammalia o__Primates f__Hominidae g__Homo s__Homo_sapiens +0 k__Eukaryota p__Apicomplexa +0 k__Eukaryota p__Apicomplexa c__Aconoidasida +0 k__Eukaryota p__Apicomplexa c__Aconoidasida o__Haemosporida +0 k__Eukaryota p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae +0 k__Eukaryota p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae g__Plasmodium +1 k__Eukaryota p__Apicomplexa c__Aconoidasida o__Haemosporida f__Plasmodiidae g__Plasmodium s__Plasmodium_knowlesi
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k1.11176.children.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,20 @@ +>C_II_XVIIIb-87/1 +TTTACCAAGAGTCCCAAATCATGATATATATATTGTCAGTGCTAGGGGGGGCATTGAGGG +ATTATGCCAGAAGCTATGGACAATGATCTCAATTGCTACAATCCAACTTGCTGCAGCAAG +ATCACACTGTCGTGTTGCCTGCATGGTACA +>C_II_XVIIIb-53/1 +CACTCGGATACCCTCATTTGATATGAGTACTACTCACTACTGTTATACTCACAATGTTAT +ACTATCTGGTTGTAGAGATCACTCACACTCACACCAATACTTAGCACTTGGTGTGCTTCG +GGTATCTGCGACAGGGAGGGTATTCTTTTC +>C_II_XVIIIb-37/1 +GGCTGCATTGTTGGCACATGACATAACAGTGTTTTCACTAAGGTCACCTGATATTAGCAC +TAATTTAGATGAGTTTTTGAGGACCTGACTGAGTATTGCTCCGTCTTTGAATATTCGTTT +GCTATATATGAAGAATGTGTCTGACCTGAT +>C_II_XVIIIb-25/1 +ACAAATTTCGGAAGATTGAAAGGAAGATTCAGAGTCACAATACAAGGTATGGAGAATTGT +TCACAAAGCTGTGCACACATATTGAAAAGAAATTGCTAGGATCATCTCGATCTAATAATG +TCCCACGGTCAGAAGAATTCAGTAGCATCC +>C_II_XVIIIb-23/1 +TCACACTGCTGGAGTTTCGATTTTGGGTGTCATCTAAATTGATAGAACGCAGAGTAGAAA +AGAATACCCTCCCTGTCGCAGATACCCGAAGCACACCAAGTGCTAAGTATTGGTGTGAGT +GTGAGTGATCTCTACAACCAGATAGTATAA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k1.e10386.children.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,252 @@ +>C_II_XVIIIb-101/1 +AGTGACATAGTAATGGGGGAGAGGAGGCGCATTACAGTCTTAGGAACGCAACTTACTTCC +TGAAGGGATTGTACTTAGCAATGGTATGTCTCTTCTCTATCTTAGTAGAGGTGACTTCAT +GATCAGCGGTCACTGCGACAGCGCGCTGAG +>C_II_XVIIIb-99/1 +ATCCAATCACCCATTAGTCTGCTCTATTAAGTGTTCGCTGACGCTAGCAGACTATGCCCG +GAACAGAAGCTGGTCACCTTTGACAGGGGGTAGGAAGATACTAGGCGTATCTAATCCTGA +CACCATAGAACTTGTGGAAGGAGAGATTCT +>C_II_XVIIIb-97/1 +TGAGTCATGCATAGAGTACGACCCCATTACCAATCTAAGCATGTTCTTAAAGGACAAGGC +AATCGCACATCCGAAAGATAACTGGCTCGCCTCATTCAGGCGGAACCTCCTCTCTGAGGA +CCAAAAGAAACAGATAAAAGAGGCGACCTC +>C_II_XVIIIb-95/1 +GTCATATTCCACACTGGAGCTCATGAAAATTCTTTCAATCTCTAGCGGAAAGTTGATCGG +CCAATCAGTGGTTTCTTATGATGAAGATACCTCTATAAAGAATGATGCTATAATAGTGTA +TGACAACACACGAAATTGGATCAGTGAGGC +>C_II_XVIIIb-93/1 +GTCGCAAGTTGATCTGATAGCCTTTGGTTCGACCCCGGAGGAATCTCAATGTCGCAATGC +AGTAATGCTACAGACCTGTGGGGCACTACAGATGTGATATATCCCACTGCTCTATCTGAA +GTCAGGTCGCTTTCTTCTGCATTCTCTCTC +>C_II_XVIIIb-91/1 +CTTCGCCTGCCTTCCTGCATTACTATCTAACTTGGTAATAGTCTATCTTGATTGCTTATA +GCTAGTTCACCTGTCTATCTAATTAGAAAAAACACGGGTAGAAGAGTCTGGAACCTAACT +AGCACATTCTGAACGCAATATGGGCTCCAA +>C_II_XVIIIb-89/1 +GGCTATTGCATGTCGGCCTGATATGGCAGTGGAGAAGGACACTGTCCGTGCATTAATCAC +CTCTCGCCCAATGCATCCAAGCTCCTCAGCTAAGCTCCTGAGCAAGCTGGATGCAGCCAG +GTCGATTGAAGAGATCAGGAAGATCAAACG +>C_II_XVIIIb-87/1 +TTTACCAAGAGTCCCAAATCATGATATATATATTGTCAGTGCTAGGGGGGGCATTGAGGG +ATTATGCCAGAAGCTATGGACAATGATCTCAATTGCTACAATCCAACTTGCTGCAGCAAG +ATCACACTGTCGTGTTGCCTGCATGGTACA +>C_II_XVIIIb-85/1 +TAGGTTGAACAAGCTGCAAGGGCACCCAGACGTCGGGGATGGAGAGACCCAATTCCTAGA +TTTTATGAGAGCAGTGGCGAACAGCGTGCGAGAAGCGTCAAATCCCGCACAAAACGTCAC +CCCTCTAGAGCCTCCCCCAACTCCTGGGCC +>C_II_XVIIIb-83/1 +AGGTAGTTTCCCTTGGCAAGAATCAGCAAGATGCCCTAACTCATGCGTCACTGGAGTCTA +TACTGATCCGTATCCCTTAGTCTTCAATCGGAATCATACCCTACGAGGGGTATTCGGGAC +AATGCTTGATGATGGACAGGCAAGACTCAA +>C_II_XVIIIb-81/1 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+AACAATTCAATAAGCAATGCCTTGGATAAG +>C_II_XVIIIb-69/1 +CTTAAAGCTAGTTCACCTGTCTATCTAATTAGAAAAAACACGGGTAGAAGAGTCTGGAAC +CTAACTAGCACATTCTGAACGCAATATGGGCTCCAAACCTTCTACCAGGATTCCAGTACC +TCTGATGCTGATCATTCGGACTATGCTGAT +>C_II_XVIIIb-67/1 +CTATCTCGGCATCTGTAGCGGTGGCCATCTTCACACTAATCTACTAGGTAGAAGAGAGAA +CAGAGACTTTGGTGACTCGTCCTGGTCTCCAGGTGTCTCCCTTCTACCCGTATTTTTTTC +TAATACCTCGGGCTCTGAGTGGATTGTTGG +>C_II_XVIIIb-65/1 +ACCCCCACCTGTTGAGTAGGAATATCCATGCAGCCAATTTCTTCAGACACTCGTTGGGCA +GCAGCCGCCAGACCTCTCCTTGCTGCCGGAGTCAGTTTTAGTTCAGCAGCCATGTCTTCA +TTGATGCTACTTCCCTGAGCCTGAGCATAC +>C_II_XVIIIb-63/1 +GTATGATCCTAGGCCTACGTCAGAAAAGGATCGTGCAAGATTCGACTTAGCTATCTTCAA +GAGTTATGAGCTTAATTTGGAGTCATATTCCACACTGGAGCTGATGAACATTCTTTCAAT +CTCTAGCGGAAAGTTGATCGGCCAATCAGT +>C_II_XVIIIb-61/1 +GCTGATGAACATTTTGACAATCCCTATCGGAACGTTGATCGGCCAATCAGTGGTTTCTTA +TGATGAAGATCCCTCTATAAAGAATGATGCTATAATAGTGTATGACAACACACGAAATTG +GATCAGTGAGGCCCAGAATTCAGATGTGGT +>C_II_XVIIIb-59/1 +TACCACAAGAGTTCATCTGCCCTCGAATTTGAGACATGCATAGAGTATGACCCCGTTACC +AATCTAAGCATGTTCTTAAAGGACAAGGCAATCGCACATCCGAAAGATAACTGGCTCGCC +TCATTCAGGCGGAACCTCCTCTCTGAGGAC +>C_II_XVIIIb-57/1 +CGGGAGCCCAGTTAATTTCCAGTAATAGAGCAACTTGTGCTTGACCAATGGAGAGGATAG +ATGTGACTCTGGTAGGATAATCTGGTGCTCTGCCCTTTCGGGACCAGAGCCTGCCATGTC +CTACCCGTGCTTTCTTTTGTGTGTTGGTTT +>C_II_XVIIIb-55/1 +AAGTGATCTCCGGGCGATAGTCCGATCTCATCAAGTTTTAATTTCGGGCCCTGGAGACCC +ATCTCCTTATGTGACACAAGGGGGTGAAATGACACTCAATAAACTCTCACAACCGGTACA +GCACCCTTCAGAGCTAGTTAAATCTGCTAC +>C_II_XVIIIb-53/1 +CACTCGGATACCCTCATTTGATATGAGTACTACTCACTACTGTTATACTCACAATGTTAT +ACTATCTGGTTGTAGAGATCACTCACACTCACACCAATACTTAGCACTTGGTGTGCTTCG +GGTATCTGCGACAGGGAGGGTATTCTTTTC +>C_II_XVIIIb-51/1 +GATCCGATCTCGTGTGTTGTCATACACTATTATAGCATCATTCTTTATAGAGGTATCTTC +ATCATAAGAGACCACTGATTGGCCGATCAACTTTCCGCTAGAGATTGAAAGAATGTTCAT +CAGCTCCAGTGTGGAATATGACTCCAAATT +>C_II_XVIIIb-49/1 +ATTTAGATCCATACAATGAGATGGAATCTTTGACAACCCTTGAGTACCTAAGAGATGACA +GTGTGGCAGTATCATATTCACTTAAAGAGAAGGAGGTGAAAGTGAATGGGCGAATTTTTG +CTAAGTTGACAAAGAAGCTAAGGAACTGCC +>C_II_XVIIIb-47/1 +ATAACCTGTGGCTCTGCCCTGTCGGGACTAGAGCCTGCCATGTCCTACCCGTGCTTTCTT +TTGTGTGTTGGTTTCCTTTATATCTCAATGCTTTTTTTATTTTTTCTTAATAAAGTGGCC +AAAAACAGGACTCAGACTAATCATGTCAGT +>C_II_XVIIIb-45/1 +GAGAAGATAGTTGATTGGTGTGTGATTGCCTGTAAGAGTCATTGTTACTGTAATATCCCT +TTGCTGCATTACCTATGGTTTTCATGTAGAATTTTTGTTGAGCACGAGTTAAATAGAGTG +AAGAGGTATCTGTAAATATTTCTTTGAGTT +>C_II_XVIIIb-43/1 +CCAGATAGTATAACATTGTGAGGATAACAGTAGTGAGTAGTACTCATATCAAATGAGGGT +ATCCGAGTGCAACCAGACCCTGTAGTAGGGGCCGGGATAAAATTCAAGTGTTCTTGATAT +GCGGAAGGATAAAATGATGTGACATCACTG +>C_II_XVIIIb-41/1 +ACTTAGGCATGATGGAAAATCGCGACGCCGGCGGCGCCAACATTTCATCCTTAAGTGATC +TCCGGGCGGTAGCCCGATCTCATCCAGTTTTAATTTCGGGCCCTGGAGACCCATCTCCTT +ATGTGACACAAGGGGGTGAAATGACACTCA +>C_II_XVIIIb-39/1 +TCCTCAGGGAGGAGGTTTCGCCTGAATGAGGCGAGCCAGTTATCTTTCGGATGTGCGATT +GCCTTGTCCTTTAAGAACATGCTTAGATTGGTAACGGGGTCATACTCTATGCATGGCTCA +AATTCGAGGGCAGATAAACTCTTGTACTCT +>C_II_XVIIIb-37/1 +GGCTGCATTGTTGGCACATGACATAACAGTGTTTTCACTAAGGTCACCTGATATTAGCAC +TAATTTAGATGAGTTTTTGAGGACCTGACTGAGTATTGCTCCGTCTTTGAATATTCGTTT +GCTATATATGAAGAATGTGTCTGACCTGAT +>C_II_XVIIIb-35/1 +GCGCTAGGCCGAAGCTCGAATCTTAGGGCACCTTCTACCGATATGTTGTCTGTCTTCGAC +GAATACGAGCAGCTCCTCGCTGCCCAGACCCGTCCTAACGGAACTCACGGAGGAGGAGAG +AAAGGGAGCACTTTAAAAGTTGAAGTCCCA +>C_II_XVIIIb-33/1 +TCCGAACCCAGCATATTCTGGAATATGGAAACAGTCACAACCATCAGCTGGTGCAACCCC +TCATGTGCCCCAGTCAGGGCAGAACCAAGACAATACTCCTGCACCTGTGGATCATGTCCA +GCTACCTGTCGACTTTGTGCAAATGATGAT +>C_II_XVIIIb-31/1 +GCAGAAGTCAGGCGAATAGAAGAAGTGGGGGTGCTAAGTCCTAGTATTATGACCAACATC +TTAACTAGGCCACCAGGCAATGGAGACTGGGCCAGCCTGTGCAACGACCCTTATTCCTTT +AACTTTGAGACTGTTGCAAGCCCAAATATT +>C_II_XVIIIb-29/1 +TTTCCATGCTTGACAAGCTGAGCAATAATTCGTCCAATGCTAAAAAGGGCCCAAGGTCAG +GCCCCCAAGAAGGGCACCATCAACCTCCGGTCCCACAACAAGGGAACCAGCCGAGCCATG +GAAGCAACCAGGAAAGACCGCAGCACCAGG +>C_II_XVIIIb-27/1 +CACAGAGACAGATTAGCAGCCAGCTGAGCTAATAGACTTTGGTTAGACCCCGGAGGAATC +TCAACGTCGCAATGCAGTAATGCTACAGACCTGTGGGGCACTACAGATGTGATATATCCC +ACTGCTCTATCTGAAGTCAGGTCGCTTTCT +>C_II_XVIIIb-25/1 +ACAAATTTCGGAAGATTGAAAGGAAGATTCAGAGTCACAATACAAGGTATGGAGAATTGT +TCACAAAGCTGTGCACACATATTGAAAAGAAATTGCTAGGATCATCTCGATCTAATAATG +TCCCACGGTCAGAAGAATTCAGTAGCATCC +>C_II_XVIIIb-23/1 +TCACACTGCTGGAGTTTCGATTTTGGGTGTCATCTAAATTGATAGAACGCAGAGTAGAAA +AGAATACCCTCCCTGTCGCAGATACCCGAAGCACACCAAGTGCTAAGTATTGGTGTGAGT +GTGAGTGATCTCTACAACCAGATAGTATAA +>C_II_XVIIIb-21/1 +TTCTCTGAACGTTCGACCCGTAGATTGCTGCTTAGTTTCTTATACCCGTCAGTTTTTTCT +TGAGTTTTCGATCTGACAGGCTGTCAGAATTGACATACAGGCTGCTGCTGTATGTGCATC +CAATTCTCATTTGCGGTCATGCTCTTGTAT +>C_II_XVIIIb-19/1 +GGCACAGACGCGAACAGAGCTTGTCATGGACTATGGAAGGAGTCACAACCATCAGCTGGT +GCAACCCCTCATGTGCCCCAGTCAGGGCAGAACCAAGACAATACTCCTGCACCTGTGGAT +CATGTCCAGCTACCTGTCGACTTTGTGCAA +>C_II_XVIIIb-17/1 +GAATTTGAATCTGTGAGGCCCAGAATTCAGATGTGGTCCGCTTATTCGAATATGCGGCAC +TCGAGGTGCTCCTTGACTGTTCTTACCAACTCTACTATCTGAGAGTGAGAGGCCTAAACA +ACATCGTCTTATACATGAGTGACCTATACA +>C_II_XVIIIb-15/1 +TGAGCCGCGATCTTAAAAGCCGAGGATAAGTTCACGACTTTGCTCAGTTCTAGCCAAGAT +GTGACAGATAGGATATATAAACAGGTGGCTCTTGAATCTCCGCTAGCGCTACTAAACACC +GAATCTATAATTATGAATGCAATAACATCC +>C_II_XVIIIb-13/1 +CCTCACAGTAGCGTCTTGTGAACGACATTCTATCCAGTCCCCTACCGAGGCTGATGAAGT +TCTTGGGAGAAAATATTGATGCTGCACTGATCGCAGCAGGGGGACAGCCCGTCCGTCCCT +TTTGTGCAGAAAGTTTGGTGAGCACACTAA +>C_II_XVIIIb-11/1 +TGTGCACGGTTTAATTGACGTCATCTTTTTCCCGTCTGTAGAGAGGTTATAAGGAGTAAA +TAAGAATACTGTGTCAGCAAGGTCCCCCTCGGCATCCATGTAGATCACAGATCTAATGAC +TGTGTCAATGTGGCTGGCAATTATCTGAGT +>C_II_XVIIIb-9/1 +GACTAATCATGTCAGTGTCGTTAGACTGTGCCTACCCGGCAGCACGGGATCTGGGCTTGT +GTTGATATTCAGTTTGACTCTTGGCATCGCGAAAGATATTCAGTGCCACATCATTCTTCC +AGCCGTCCTATGGCTGACTCAATTGGCTGG +>C_II_XVIIIb-7/1 +GCCATGGTGATTAAGCAGTTCCTAATCCTCTGAACAAGTATCGTACTAAGTAATCTTCCT +TTGGGTTTGGTAGTGTGTGCTCGGGGCAAATCTCGCTAAGCGTAAATGCATCATACCTTG +CTGGAGCAGTCAAATCTAGCTCTTGTATAA +>C_II_XVIIIb-5/1 +TAGAAACTATTATAGCATCATTGTTTTTATAGGTATCTTCATCATAAGAAACCACTGATT +GGCCGATCAACTTTCCGCTAGAGATTGAAAGAATGTTCATCAGCTCCAGTGTGGAATATG +ACTCCAAATTAAGCTCATAACTCTTGAAGA +>C_II_XVIIIb-3/1 +CAGATAAAAGAGACGACCCTAACTTATCGCCTCTTGATTGAGTTTTTAGAATCAAATGAT +TTTGATCCATACAAGGAGATGGAATACTTGACAACCCTTGAGTACCTAAGAGATGACAGT +GTGGCAGTATCATATTCACTTAAAGAGAAG +>C_II_XVIIIb-1/1 +CTTGCTCATTGGCTCATGATTGCGGTTTGTGGAAACTCTCTCTTTGCAGTCGGTGATACG +TTTCTTATTGCTGTTGAAGGACAGTTGACTCATTGCCAACATACTCTTAGTCAAGGATAT +GCTATCTTGAATGACCCCATTTCCTTGGAA +>HQ630064-957/1 +CAAAGCAAATTTTGTAGCTTAAGATAAAGGGGGCCCTAAAGAAGAAGCAACATCGTCTCG +GGCTGTGTTTCCGACGTTGGGGTGCATTATGCGATTTTACTACCAGTGTTTGGTGTGGTG +TGGTAAGGGGAAATGAGACGAGAATTTTTC +>HQ630064-665/1 +CCCCGGGAGCTTTTTAGCGCGGCGTCACGTATAAATGCACAGAAGCTTCGTCAGTAACGA +AGCGCCTCTGCCAGAGTTATTAACATTAGGACTCGAGAGAGTCTCGAGAAGAGACTTCCC +AAAGAGAGTGCCGCTTTGATCTCCAGATCA +>HQ630064-403/1 +TGTCTACCTGTCTGTCAAATTGTGACTACCACGTACCAACTCCTCCCCAAAGTTCTACCC +TTTTCCTTAAAAACACATTTAAAATGTCAAAATACCGATCCTTATATTTGTGTGTTATGT +TTTCTTTTGCCTTCTAGGATTGATTGAATT +>HQ630064-343/1 +ACGAAAGAAAGAAAGGAAAAGGCCTCAAAGTTAATTTTGTAGCTTAAAAAAGAGGGGGCC +CTAAAGAAGAAGCAACATCGTCTCGGGCTGTGTTTCCGACGTTGGGGTGCATTATGCGAT +TTTACTACCAGTGTTTGGTGTGGTGTGGTA +>HQ630064-307/1 +TCGTGTGTTTGCTCGCGTGCTTTGGATGTTGGGATGAGGCCTTGGTGTTGCCAGGCTCCG +GTTTCTTAAAGGTTATCCGAGGGGGAAGTTCCACGTGTTCTTTTAGCTTTTCTCCATATT +CCGGTCTACGGGTACAAATGTCCTCTGGAT +>HQ630064-241/1 +CGTGACCTCATTTACAAGATGTCGGTGGCACCCAGCTACGTCACGTTCGCACCGAGGGTC +CAACATTTTCCTAAAATGGCAAAGCGGGACTTGGGTCCGTGGGTAAATTTTCTAATTTTT +TCCCACGGTCTGTCGCAAGAGCGTATTCTC +>HQ630064-217/1 +AACTTTGGGGAGGAATTGGTACGTGGTAGACACAATTTGACAGACAGGTAGACAGACAAC +GAATTACAAGCGGCCTAGGGTAATAGCGCTGAGCCCATGATGTGTCCGTGCATATGAGAC +GACTAATAAGGTAGTCACGTAAACCCCCGT +>HQ630064-199/1 +AGAAGCAGTATTGTGATCTTTCTCTCTTTCGCATGAATCGCTAGGAAGAGGAATTTTGGA +AGCATCTGGATACCTTACAGGAGATTTAGAAATCTCGGTAGTTATGACATGTTCATCAGA +TGAGGAAGATAGCAAGCGTGACGGTGTTTT +>HQ630064-111/1 +GTGTCTCCGAGTTGTGCTCTCTCGAAACTCACTTTGCCCTCACTTGTTGGCTTTATGGAG +GTCGTAATGATCATCGATGGAGTACTTATATAATATTGTGCTCTGCCGGCCATCTCTCCG +TGGTCGCAGAACTCCAACACCTTGTTGGCG +>HQ630064-105/1 +AGTTTAAACTTTGTCCGCGCGCCAATCTTGAAGTGATATTAGGACATAGTCAACCAACCG +ACGTACGTTGAACCATTTGCGGGCAGCGCTGAGGGAAGACGAGATGTATGGACAACACAA +CGACCGGAGAAGAGGGCGTAAAGAACATCA +>HQ630064-11/1 +GAAAGAAAGAAAGGAAAAGGCCTCAAAGCAAATTTTGTAGCTTAAAAAAGAGGGGGCCCT +AAAGAAGAAGCAACATCGTCTCGGGCTGTGTTTCCGACGTTGGGGTGCATTATGCGATTT +TACTACCAGTGTTTGGTGTGGTGTGGTAAG +>HQ630064-3/1 +AGGACTGTCGCTCATATCTTGCGTACTGTGTCTTATTTACTCGTGTTGTCTTTCCGCAGG +GAATGCGCGGTTCGAGTAGGCCGTGGTTTGCGGCCGTTCTCGGATAAGCACAAAATATCG +CCCTACTCGTGTGTCAAAAAGGAAAAGTCT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k2.11176.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,28 @@ +>C_II_XVIIIb-65/1 +ACCCCCACCTGTTGAGTAGGAATATCCATGCAGCCAATTTCTTCAGACACTCGTTGGGCA +GCAGCCGCCAGACCTCTCCTTGCTGCCGGAGTCAGTTTTAGTTCAGCAGCCATGTCTTCA +TTGATGCTACTTCCCTGAGCCTGAGCATAC +>C_II_XVIIIb-57/1 +CGGGAGCCCAGTTAATTTCCAGTAATAGAGCAACTTGTGCTTGACCAATGGAGAGGATAG +ATGTGACTCTGGTAGGATAATCTGGTGCTCTGCCCTTTCGGGACCAGAGCCTGCCATGTC +CTACCCGTGCTTTCTTTTGTGTGTTGGTTT +>C_II_XVIIIb-49/1 +ATTTAGATCCATACAATGAGATGGAATCTTTGACAACCCTTGAGTACCTAAGAGATGACA +GTGTGGCAGTATCATATTCACTTAAAGAGAAGGAGGTGAAAGTGAATGGGCGAATTTTTG +CTAAGTTGACAAAGAAGCTAAGGAACTGCC +>C_II_XVIIIb-45/1 +GAGAAGATAGTTGATTGGTGTGTGATTGCCTGTAAGAGTCATTGTTACTGTAATATCCCT +TTGCTGCATTACCTATGGTTTTCATGTAGAATTTTTGTTGAGCACGAGTTAAATAGAGTG +AAGAGGTATCTGTAAATATTTCTTTGAGTT +>C_II_XVIIIb-17/1 +GAATTTGAATCTGTGAGGCCCAGAATTCAGATGTGGTCCGCTTATTCGAATATGCGGCAC +TCGAGGTGCTCCTTGACTGTTCTTACCAACTCTACTATCTGAGAGTGAGAGGCCTAAACA +ACATCGTCTTATACATGAGTGACCTATACA +>C_II_XVIIIb-9/1 +GACTAATCATGTCAGTGTCGTTAGACTGTGCCTACCCGGCAGCACGGGATCTGGGCTTGT +GTTGATATTCAGTTTGACTCTTGGCATCGCGAAAGATATTCAGTGCCACATCATTCTTCC +AGCCGTCCTATGGCTGACTCAATTGGCTGG +>C_II_XVIIIb-1/1 +CTTGCTCATTGGCTCATGATTGCGGTTTGTGGAAACTCTCTCTTTGCAGTCGGTGATACG +TTTCTTATTGCTGTTGAAGGACAGTTGACTCATTGCCAACATACTCTTAGTCAAGGATAT +GCTATCTTGAATGACCCCATTTCCTTGGAA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k2.11176.fq Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,28 @@ +@C_II_XVIIIb-65/1 +ACCCCCACCTGTTGAGTAGGAATATCCATGCAGCCAATTTCTTCAGACACTCGTTGGGCAGCAGCCGCCAGACCTCTCCTTGCTGCCGGAGTCAGTTTTAGTTCAGCAGCCATGTCTTCATTGATGCTACTTCCCTGAGCCTGAGCATAC ++ +G9;G*GGG3GGG*GGF+G#GFG*<G#GD,EB#GGGGFGGGGC8GCG:FGDGFC5G7AGGFGGGGFEGGGGCGDE@G>DGGGGFGGGGGG77FGGG,GGGGFGCGGFG>GGGGCFGGAGGG7GGGGGGGGGGGEGGEGGF<EFGGGF,GFG +@C_II_XVIIIb-57/1 +CGGGAGCCCAGTTAATTTCCAGTAATAGAGCAACTTGTGCTTGACCAATGGAGAGGATAGATGTGACTCTGGTAGGATAATCTGGTGCTCTGCCCTTTCGGGACCAGAGCCTGCCATGTCCTACCCGTGCTTTCTTTTGTGTGTTGGTTT ++ +FGGGF#GFEGGGG,FE,GGGFGCGGGEG+FCGE#?G:EEGA9FGEGDGGCDFGGGGFF<GGGC:GGGGGD7GFGGGFG*A7EGGGFG@GGGFGGGGEFGGGGGGGGFGGFGGGCGFGGGGGGGGGGGGGGGGGG:GGGGGGGGGGGFGGG +@C_II_XVIIIb-49/1 +ATTTAGATCCATACAATGAGATGGAATCTTTGACAACCCTTGAGTACCTAAGAGATGACAGTGTGGCAGTATCATATTCACTTAAAGAGAAGGAGGTGAAAGTGAATGGGCGAATTTTTGCTAAGTTGACAAAGAAGCTAAGGAACTGCC ++ +CGG9#G<:AG:GG?G@#0E#6:EGGGF##G=GGGGGG=GG<CFGGGDGCGGGG9GGGGGG7CFGGCEGFCFGFGFGGGGGD+C9=CGGGGGGGGFGGGFFGGGGCGGGG9GG<GGCGGGFGGGEEC,EGGG@GCGGCGGGGGGGGCGFGG +@C_II_XVIIIb-45/1 +GAGAAGATAGTTGATTGGTGTGTGATTGCCTGTAAGAGTCATTGTTACTGTAATATCCCTTTGCTGCATTACCTATGGTTTTCATGTAGAATTTTTGTTGAGCACGAGTTAAATAGAGTGAAGAGGTATCTGTAAATATTTCTTTGAGTT ++ +GGGGFGFDG>:FGFF*;GCGG#?GGEGFEGC#G<G<GEGGGGFGFGGGGGFGGGFG1C+G9FGGGFGGGGFECGGGGCGC+GGGG9G+DGGFGGGGGGGGCCDFGGGCGGFG:GG4*F8EGGGGGG7GDGGG7GGGGFGGGCGG=E,=G< +@C_II_XVIIIb-17/1 +GAATTTGAATCTGTGAGGCCCAGAATTCAGATGTGGTCCGCTTATTCGAATATGCGGCACTCGAGGTGCTCCTTGACTGTTCTTACCAACTCTACTATCTGAGAGTGAGAGGCCTAAACAACATCGTCTTATACATGAGTGACCTATACA ++ +GEG#*#F#GGG*G=EG9GG*FGE#GGGGCFGCGFE9GGCGG+GFF5EGG*GDG@EGGGEGG6FFGGGGGGGEG?GGCGGGGF<GGFGGFGGGGFACGG@GCGGGGFGG4FGGGGGGGGGGGG9C?CFGGGGGGEGGGGFGGGF:GGGGGG +@C_II_XVIIIb-9/1 +GACTAATCATGTCAGTGTCGTTAGACTGTGCCTACCCGGCAGCACGGGATCTGGGCTTGTGTTGATATTCAGTTTGACTCTTGGCATCGCGAAAGATATTCAGTGCCACATCATTCTTCCAGCCGTCCTATGGCTGACTCAATTGGCTGG ++ +ECGGGF1CG:5GCG?)G>#GG6EFE#GG58#GGGFGGGGCGCGFBCGGGGGFGDG@FGGGGGCFGGGCFGFD8CGDFGDGGGACDGFGFGGGG:FGG>GGGG>GGGCFGG4GGCBGGGGFFGEGGGGGGGGGGGGGGGGGGGG:GGGGGG +@C_II_XVIIIb-1/1 +CTTGCTCATTGGCTCATGATTGCGGTTTGTGGAAACTCTCTCTTTGCAGTCGGTGATACGTTTCTTATTGCTGTTGAAGGACAGTTGACTCATTGCCAACATACTCTTAGTCAAGGATATGCTATCTTGAATGACCCCATTTCCTTGGAA ++ +GFFGG@G#G#GG#GGGC;EGGGGGGE#FG#+GGGGG*GGGGDGGGFCFGG8CCGG1FGGEGGGFGGGGGF*GGGCGGFGGGGG/GF:EGGGGFF@GGG*GE+DGGGFGGCGGGGGGGG@GDGGGGG,GF,CG4FFGGGGFGGGGCFGGGG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k2.11176.max2.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,8 @@ +>C_II_XVIIIb-65/1 +ACCCCCACCTGTTGAGTAGGAATATCCATGCAGCCAATTTCTTCAGACACTCGTTGGGCA +GCAGCCGCCAGACCTCTCCTTGCTGCCGGAGTCAGTTTTAGTTCAGCAGCCATGTCTTCA +TTGATGCTACTTCCCTGAGCCTGAGCATAC +>C_II_XVIIIb-57/1 +CGGGAGCCCAGTTAATTTCCAGTAATAGAGCAACTTGTGCTTGACCAATGGAGAGGATAG +ATGTGACTCTGGTAGGATAATCTGGTGCTCTGCCCTTTCGGGACCAGAGCCTGCCATGTC +CTACCCGTGCTTTCTTTTGTGTGTTGGTTT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k2.11176.parents.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,76 @@ +>C_II_XVIIIb-99/1 +ATCCAATCACCCATTAGTCTGCTCTATTAAGTGTTCGCTGACGCTAGCAGACTATGCCCG +GAACAGAAGCTGGTCACCTTTGACAGGGGGTAGGAAGATACTAGGCGTATCTAATCCTGA +CACCATAGAACTTGTGGAAGGAGAGATTCT +>C_II_XVIIIb-97/1 +TGAGTCATGCATAGAGTACGACCCCATTACCAATCTAAGCATGTTCTTAAAGGACAAGGC +AATCGCACATCCGAAAGATAACTGGCTCGCCTCATTCAGGCGGAACCTCCTCTCTGAGGA +CCAAAAGAAACAGATAAAAGAGGCGACCTC +>C_II_XVIIIb-93/1 +GTCGCAAGTTGATCTGATAGCCTTTGGTTCGACCCCGGAGGAATCTCAATGTCGCAATGC +AGTAATGCTACAGACCTGTGGGGCACTACAGATGTGATATATCCCACTGCTCTATCTGAA +GTCAGGTCGCTTTCTTCTGCATTCTCTCTC +>C_II_XVIIIb-87/1 +TTTACCAAGAGTCCCAAATCATGATATATATATTGTCAGTGCTAGGGGGGGCATTGAGGG +ATTATGCCAGAAGCTATGGACAATGATCTCAATTGCTACAATCCAACTTGCTGCAGCAAG +ATCACACTGTCGTGTTGCCTGCATGGTACA +>C_II_XVIIIb-85/1 +TAGGTTGAACAAGCTGCAAGGGCACCCAGACGTCGGGGATGGAGAGACCCAATTCCTAGA +TTTTATGAGAGCAGTGGCGAACAGCGTGCGAGAAGCGTCAAATCCCGCACAAAACGTCAC +CCCTCTAGAGCCTCCCCCAACTCCTGGGCC +>C_II_XVIIIb-75/1 +CAATCTGGATGATAACGGACTAGCGCCCGGAGATGACTTAAGGATGAAATGTTGGCGCAA +CCGGGGTCCAGAATTTTCATCATGCCTAAGTTGGCTTCCATGATCGCAACAGATGTTTTA +AGCTGTTGGATTTCAGACCGCATCATAGGG +>C_II_XVIIIb-65/1 +ACCCCCACCTGTTGAGTAGGAATATCCATGCAGCCAATTTCTTCAGACACTCGTTGGGCA +GCAGCCGCCAGACCTCTCCTTGCTGCCGGAGTCAGTTTTAGTTCAGCAGCCATGTCTTCA +TTGATGCTACTTCCCTGAGCCTGAGCATAC +>C_II_XVIIIb-57/1 +CGGGAGCCCAGTTAATTTCCAGTAATAGAGCAACTTGTGCTTGACCAATGGAGAGGATAG +ATGTGACTCTGGTAGGATAATCTGGTGCTCTGCCCTTTCGGGACCAGAGCCTGCCATGTC +CTACCCGTGCTTTCTTTTGTGTGTTGGTTT +>C_II_XVIIIb-49/1 +ATTTAGATCCATACAATGAGATGGAATCTTTGACAACCCTTGAGTACCTAAGAGATGACA +GTGTGGCAGTATCATATTCACTTAAAGAGAAGGAGGTGAAAGTGAATGGGCGAATTTTTG +CTAAGTTGACAAAGAAGCTAAGGAACTGCC +>C_II_XVIIIb-45/1 +GAGAAGATAGTTGATTGGTGTGTGATTGCCTGTAAGAGTCATTGTTACTGTAATATCCCT +TTGCTGCATTACCTATGGTTTTCATGTAGAATTTTTGTTGAGCACGAGTTAAATAGAGTG +AAGAGGTATCTGTAAATATTTCTTTGAGTT +>C_II_XVIIIb-43/1 +CCAGATAGTATAACATTGTGAGGATAACAGTAGTGAGTAGTACTCATATCAAATGAGGGT +ATCCGAGTGCAACCAGACCCTGTAGTAGGGGCCGGGATAAAATTCAAGTGTTCTTGATAT +GCGGAAGGATAAAATGATGTGACATCACTG +>C_II_XVIIIb-33/1 +TCCGAACCCAGCATATTCTGGAATATGGAAACAGTCACAACCATCAGCTGGTGCAACCCC +TCATGTGCCCCAGTCAGGGCAGAACCAAGACAATACTCCTGCACCTGTGGATCATGTCCA +GCTACCTGTCGACTTTGTGCAAATGATGAT +>C_II_XVIIIb-29/1 +TTTCCATGCTTGACAAGCTGAGCAATAATTCGTCCAATGCTAAAAAGGGCCCAAGGTCAG +GCCCCCAAGAAGGGCACCATCAACCTCCGGTCCCACAACAAGGGAACCAGCCGAGCCATG +GAAGCAACCAGGAAAGACCGCAGCACCAGG +>C_II_XVIIIb-19/1 +GGCACAGACGCGAACAGAGCTTGTCATGGACTATGGAAGGAGTCACAACCATCAGCTGGT +GCAACCCCTCATGTGCCCCAGTCAGGGCAGAACCAAGACAATACTCCTGCACCTGTGGAT +CATGTCCAGCTACCTGTCGACTTTGTGCAA +>C_II_XVIIIb-17/1 +GAATTTGAATCTGTGAGGCCCAGAATTCAGATGTGGTCCGCTTATTCGAATATGCGGCAC +TCGAGGTGCTCCTTGACTGTTCTTACCAACTCTACTATCTGAGAGTGAGAGGCCTAAACA +ACATCGTCTTATACATGAGTGACCTATACA +>C_II_XVIIIb-9/1 +GACTAATCATGTCAGTGTCGTTAGACTGTGCCTACCCGGCAGCACGGGATCTGGGCTTGT +GTTGATATTCAGTTTGACTCTTGGCATCGCGAAAGATATTCAGTGCCACATCATTCTTCC +AGCCGTCCTATGGCTGACTCAATTGGCTGG +>C_II_XVIIIb-5/1 +TAGAAACTATTATAGCATCATTGTTTTTATAGGTATCTTCATCATAAGAAACCACTGATT +GGCCGATCAACTTTCCGCTAGAGATTGAAAGAATGTTCATCAGCTCCAGTGTGGAATATG +ACTCCAAATTAAGCTCATAACTCTTGAAGA +>C_II_XVIIIb-3/1 +CAGATAAAAGAGACGACCCTAACTTATCGCCTCTTGATTGAGTTTTTAGAATCAAATGAT +TTTGATCCATACAAGGAGATGGAATACTTGACAACCCTTGAGTACCTAAGAGATGACAGT +GTGGCAGTATCATATTCACTTAAAGAGAAG +>C_II_XVIIIb-1/1 +CTTGCTCATTGGCTCATGATTGCGGTTTGTGGAAACTCTCTCTTTGCAGTCGGTGATACG +TTTCTTATTGCTGTTGAAGGACAGTTGACTCATTGCCAACATACTCTTAGTCAAGGATAT +GCTATCTTGAATGACCCCATTTCCTTGGAA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out1.k2.exclude_both.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,176 @@ +>C_II_XVIIIb-101/1 +AGTGACATAGTAATGGGGGAGAGGAGGCGCATTACAGTCTTAGGAACGCAACTTACTTCC +TGAAGGGATTGTACTTAGCAATGGTATGTCTCTTCTCTATCTTAGTAGAGGTGACTTCAT +GATCAGCGGTCACTGCGACAGCGCGCTGAG +>C_II_XVIIIb-95/1 +GTCATATTCCACACTGGAGCTCATGAAAATTCTTTCAATCTCTAGCGGAAAGTTGATCGG +CCAATCAGTGGTTTCTTATGATGAAGATACCTCTATAAAGAATGATGCTATAATAGTGTA +TGACAACACACGAAATTGGATCAGTGAGGC +>C_II_XVIIIb-91/1 +CTTCGCCTGCCTTCCTGCATTACTATCTAACTTGGTAATAGTCTATCTTGATTGCTTATA +GCTAGTTCACCTGTCTATCTAATTAGAAAAAACACGGGTAGAAGAGTCTGGAACCTAACT +AGCACATTCTGAACGCAATATGGGCTCCAA +>C_II_XVIIIb-89/1 +GGCTATTGCATGTCGGCCTGATATGGCAGTGGAGAAGGACACTGTCCGTGCATTAATCAC +CTCTCGCCCAATGCATCCAAGCTCCTCAGCTAAGCTCCTGAGCAAGCTGGATGCAGCCAG +GTCGATTGAAGAGATCAGGAAGATCAAACG +>C_II_XVIIIb-83/1 +AGGTAGTTTCCCTTGGCAAGAATCAGCAAGATGCCCTAACTCATGCGTCACTGGAGTCTA +TACTGATCCGTATCCCTTAGTCTTCAATCGGAATCATACCCTACGAGGGGTATTCGGGAC +AATGCTTGATGATGGACAGGCAAGACTCAA +>C_II_XVIIIb-81/1 +GGCCGCCGGCCCACTGAGTGGGGCCGCCTTCTCGGGTGCGGACGGCTGTTTGTCTGGTCT +GGCTTGTTGGTCGGGGGCGTCCTGGCCGGCATTTGATTGGACACTCCCGTGCTTCTCCCA +TGCAGTGCTCAGAGCCTTGGTCTTGCCTTG +>C_II_XVIIIb-79/1 +GCTTGTAAAGCATGGACAGAAGATAGTTGCTTGCTCCGGTATTGAGCTGTATGTCGCCGG +CCTCGCCTGCAGCCTGGGTGGGAGAGGACTCGGTGGATGTGGCCGGCGGGTCACTGTGTT +GGGCCGCCTGCTCGGGTGCGGACGGCTGTT +>C_II_XVIIIb-77/1 +TGCTAGGAAGATGAAAGCACGTAACCTTCTCATCTCCACTGTCACACTTTGTGCACCCTC +CACTGACACTGAGAATCTCTCCTTCCACAAGTTCTATGGTGTCAGGATTAGATACGCCTA +GTATCTTCCTACCCCCTGTCAAAGGTGACC +>C_II_XVIIIb-73/1 +CAGACGCGGAATGCTCAGCAGTCACTCAATACCTATTGTCGGATGCTGTGAGACCATTGC +TTAGGTCGGAACAAGTGAACTCTATCATATCTCCCAACATAATCACATTTCCCGCCAATC +TATATTACATGTCCAGGAAGAGTCTTAATC +>C_II_XVIIIb-71/1 +GGGTTAACTCTGAGGCTCAGGGGAGAATGTGATGCAACTTATCAAAAGGATATCTCAATA +TTAGATTCTCAAGTCATCGTGACCGGCAATCTCGTTATATCAACTGAGCTTGGAAATGTC +AACAATTCAATAAGCAATGCCTTGGATAAG +>C_II_XVIIIb-69/1 +CTTAAAGCTAGTTCACCTGTCTATCTAATTAGAAAAAACACGGGTAGAAGAGTCTGGAAC +CTAACTAGCACATTCTGAACGCAATATGGGCTCCAAACCTTCTACCAGGATTCCAGTACC +TCTGATGCTGATCATTCGGACTATGCTGAT +>C_II_XVIIIb-67/1 +CTATCTCGGCATCTGTAGCGGTGGCCATCTTCACACTAATCTACTAGGTAGAAGAGAGAA +CAGAGACTTTGGTGACTCGTCCTGGTCTCCAGGTGTCTCCCTTCTACCCGTATTTTTTTC +TAATACCTCGGGCTCTGAGTGGATTGTTGG +>C_II_XVIIIb-63/1 +GTATGATCCTAGGCCTACGTCAGAAAAGGATCGTGCAAGATTCGACTTAGCTATCTTCAA +GAGTTATGAGCTTAATTTGGAGTCATATTCCACACTGGAGCTGATGAACATTCTTTCAAT +CTCTAGCGGAAAGTTGATCGGCCAATCAGT +>C_II_XVIIIb-61/1 +GCTGATGAACATTTTGACAATCCCTATCGGAACGTTGATCGGCCAATCAGTGGTTTCTTA +TGATGAAGATCCCTCTATAAAGAATGATGCTATAATAGTGTATGACAACACACGAAATTG +GATCAGTGAGGCCCAGAATTCAGATGTGGT +>C_II_XVIIIb-59/1 +TACCACAAGAGTTCATCTGCCCTCGAATTTGAGACATGCATAGAGTATGACCCCGTTACC +AATCTAAGCATGTTCTTAAAGGACAAGGCAATCGCACATCCGAAAGATAACTGGCTCGCC +TCATTCAGGCGGAACCTCCTCTCTGAGGAC +>C_II_XVIIIb-55/1 +AAGTGATCTCCGGGCGATAGTCCGATCTCATCAAGTTTTAATTTCGGGCCCTGGAGACCC +ATCTCCTTATGTGACACAAGGGGGTGAAATGACACTCAATAAACTCTCACAACCGGTACA +GCACCCTTCAGAGCTAGTTAAATCTGCTAC +>C_II_XVIIIb-53/1 +CACTCGGATACCCTCATTTGATATGAGTACTACTCACTACTGTTATACTCACAATGTTAT +ACTATCTGGTTGTAGAGATCACTCACACTCACACCAATACTTAGCACTTGGTGTGCTTCG +GGTATCTGCGACAGGGAGGGTATTCTTTTC +>C_II_XVIIIb-51/1 +GATCCGATCTCGTGTGTTGTCATACACTATTATAGCATCATTCTTTATAGAGGTATCTTC +ATCATAAGAGACCACTGATTGGCCGATCAACTTTCCGCTAGAGATTGAAAGAATGTTCAT +CAGCTCCAGTGTGGAATATGACTCCAAATT +>C_II_XVIIIb-47/1 +ATAACCTGTGGCTCTGCCCTGTCGGGACTAGAGCCTGCCATGTCCTACCCGTGCTTTCTT +TTGTGTGTTGGTTTCCTTTATATCTCAATGCTTTTTTTATTTTTTCTTAATAAAGTGGCC +AAAAACAGGACTCAGACTAATCATGTCAGT +>C_II_XVIIIb-41/1 +ACTTAGGCATGATGGAAAATCGCGACGCCGGCGGCGCCAACATTTCATCCTTAAGTGATC +TCCGGGCGGTAGCCCGATCTCATCCAGTTTTAATTTCGGGCCCTGGAGACCCATCTCCTT +ATGTGACACAAGGGGGTGAAATGACACTCA +>C_II_XVIIIb-39/1 +TCCTCAGGGAGGAGGTTTCGCCTGAATGAGGCGAGCCAGTTATCTTTCGGATGTGCGATT +GCCTTGTCCTTTAAGAACATGCTTAGATTGGTAACGGGGTCATACTCTATGCATGGCTCA +AATTCGAGGGCAGATAAACTCTTGTACTCT +>C_II_XVIIIb-37/1 +GGCTGCATTGTTGGCACATGACATAACAGTGTTTTCACTAAGGTCACCTGATATTAGCAC +TAATTTAGATGAGTTTTTGAGGACCTGACTGAGTATTGCTCCGTCTTTGAATATTCGTTT +GCTATATATGAAGAATGTGTCTGACCTGAT +>C_II_XVIIIb-35/1 +GCGCTAGGCCGAAGCTCGAATCTTAGGGCACCTTCTACCGATATGTTGTCTGTCTTCGAC +GAATACGAGCAGCTCCTCGCTGCCCAGACCCGTCCTAACGGAACTCACGGAGGAGGAGAG +AAAGGGAGCACTTTAAAAGTTGAAGTCCCA +>C_II_XVIIIb-31/1 +GCAGAAGTCAGGCGAATAGAAGAAGTGGGGGTGCTAAGTCCTAGTATTATGACCAACATC +TTAACTAGGCCACCAGGCAATGGAGACTGGGCCAGCCTGTGCAACGACCCTTATTCCTTT +AACTTTGAGACTGTTGCAAGCCCAAATATT +>C_II_XVIIIb-27/1 +CACAGAGACAGATTAGCAGCCAGCTGAGCTAATAGACTTTGGTTAGACCCCGGAGGAATC +TCAACGTCGCAATGCAGTAATGCTACAGACCTGTGGGGCACTACAGATGTGATATATCCC +ACTGCTCTATCTGAAGTCAGGTCGCTTTCT +>C_II_XVIIIb-25/1 +ACAAATTTCGGAAGATTGAAAGGAAGATTCAGAGTCACAATACAAGGTATGGAGAATTGT +TCACAAAGCTGTGCACACATATTGAAAAGAAATTGCTAGGATCATCTCGATCTAATAATG +TCCCACGGTCAGAAGAATTCAGTAGCATCC +>C_II_XVIIIb-23/1 +TCACACTGCTGGAGTTTCGATTTTGGGTGTCATCTAAATTGATAGAACGCAGAGTAGAAA +AGAATACCCTCCCTGTCGCAGATACCCGAAGCACACCAAGTGCTAAGTATTGGTGTGAGT +GTGAGTGATCTCTACAACCAGATAGTATAA +>C_II_XVIIIb-21/1 +TTCTCTGAACGTTCGACCCGTAGATTGCTGCTTAGTTTCTTATACCCGTCAGTTTTTTCT +TGAGTTTTCGATCTGACAGGCTGTCAGAATTGACATACAGGCTGCTGCTGTATGTGCATC +CAATTCTCATTTGCGGTCATGCTCTTGTAT +>C_II_XVIIIb-15/1 +TGAGCCGCGATCTTAAAAGCCGAGGATAAGTTCACGACTTTGCTCAGTTCTAGCCAAGAT +GTGACAGATAGGATATATAAACAGGTGGCTCTTGAATCTCCGCTAGCGCTACTAAACACC +GAATCTATAATTATGAATGCAATAACATCC +>C_II_XVIIIb-13/1 +CCTCACAGTAGCGTCTTGTGAACGACATTCTATCCAGTCCCCTACCGAGGCTGATGAAGT +TCTTGGGAGAAAATATTGATGCTGCACTGATCGCAGCAGGGGGACAGCCCGTCCGTCCCT +TTTGTGCAGAAAGTTTGGTGAGCACACTAA +>C_II_XVIIIb-11/1 +TGTGCACGGTTTAATTGACGTCATCTTTTTCCCGTCTGTAGAGAGGTTATAAGGAGTAAA +TAAGAATACTGTGTCAGCAAGGTCCCCCTCGGCATCCATGTAGATCACAGATCTAATGAC +TGTGTCAATGTGGCTGGCAATTATCTGAGT +>C_II_XVIIIb-7/1 +GCCATGGTGATTAAGCAGTTCCTAATCCTCTGAACAAGTATCGTACTAAGTAATCTTCCT +TTGGGTTTGGTAGTGTGTGCTCGGGGCAAATCTCGCTAAGCGTAAATGCATCATACCTTG +CTGGAGCAGTCAAATCTAGCTCTTGTATAA +>HQ630064-957/1 +CAAAGCAAATTTTGTAGCTTAAGATAAAGGGGGCCCTAAAGAAGAAGCAACATCGTCTCG +GGCTGTGTTTCCGACGTTGGGGTGCATTATGCGATTTTACTACCAGTGTTTGGTGTGGTG +TGGTAAGGGGAAATGAGACGAGAATTTTTC +>HQ630064-665/1 +CCCCGGGAGCTTTTTAGCGCGGCGTCACGTATAAATGCACAGAAGCTTCGTCAGTAACGA +AGCGCCTCTGCCAGAGTTATTAACATTAGGACTCGAGAGAGTCTCGAGAAGAGACTTCCC +AAAGAGAGTGCCGCTTTGATCTCCAGATCA +>HQ630064-403/1 +TGTCTACCTGTCTGTCAAATTGTGACTACCACGTACCAACTCCTCCCCAAAGTTCTACCC +TTTTCCTTAAAAACACATTTAAAATGTCAAAATACCGATCCTTATATTTGTGTGTTATGT +TTTCTTTTGCCTTCTAGGATTGATTGAATT +>HQ630064-343/1 +ACGAAAGAAAGAAAGGAAAAGGCCTCAAAGTTAATTTTGTAGCTTAAAAAAGAGGGGGCC +CTAAAGAAGAAGCAACATCGTCTCGGGCTGTGTTTCCGACGTTGGGGTGCATTATGCGAT +TTTACTACCAGTGTTTGGTGTGGTGTGGTA +>HQ630064-307/1 +TCGTGTGTTTGCTCGCGTGCTTTGGATGTTGGGATGAGGCCTTGGTGTTGCCAGGCTCCG +GTTTCTTAAAGGTTATCCGAGGGGGAAGTTCCACGTGTTCTTTTAGCTTTTCTCCATATT +CCGGTCTACGGGTACAAATGTCCTCTGGAT +>HQ630064-241/1 +CGTGACCTCATTTACAAGATGTCGGTGGCACCCAGCTACGTCACGTTCGCACCGAGGGTC +CAACATTTTCCTAAAATGGCAAAGCGGGACTTGGGTCCGTGGGTAAATTTTCTAATTTTT +TCCCACGGTCTGTCGCAAGAGCGTATTCTC +>HQ630064-217/1 +AACTTTGGGGAGGAATTGGTACGTGGTAGACACAATTTGACAGACAGGTAGACAGACAAC +GAATTACAAGCGGCCTAGGGTAATAGCGCTGAGCCCATGATGTGTCCGTGCATATGAGAC +GACTAATAAGGTAGTCACGTAAACCCCCGT +>HQ630064-199/1 +AGAAGCAGTATTGTGATCTTTCTCTCTTTCGCATGAATCGCTAGGAAGAGGAATTTTGGA +AGCATCTGGATACCTTACAGGAGATTTAGAAATCTCGGTAGTTATGACATGTTCATCAGA +TGAGGAAGATAGCAAGCGTGACGGTGTTTT +>HQ630064-111/1 +GTGTCTCCGAGTTGTGCTCTCTCGAAACTCACTTTGCCCTCACTTGTTGGCTTTATGGAG +GTCGTAATGATCATCGATGGAGTACTTATATAATATTGTGCTCTGCCGGCCATCTCTCCG +TGGTCGCAGAACTCCAACACCTTGTTGGCG +>HQ630064-105/1 +AGTTTAAACTTTGTCCGCGCGCCAATCTTGAAGTGATATTAGGACATAGTCAACCAACCG +ACGTACGTTGAACCATTTGCGGGCAGCGCTGAGGGAAGACGAGATGTATGGACAACACAA +CGACCGGAGAAGAGGGCGTAAAGAACATCA +>HQ630064-11/1 +GAAAGAAAGAAAGGAAAAGGCCTCAAAGCAAATTTTGTAGCTTAAAAAAGAGGGGGCCCT +AAAGAAGAAGCAACATCGTCTCGGGCTGTGTTTCCGACGTTGGGGTGCATTATGCGATTT +TACTACCAGTGTTTGGTGTGGTGTGGTAAG +>HQ630064-3/1 +AGGACTGTCGCTCATATCTTGCGTACTGTGTCTTATTTACTCGTGTTGTCTTTCCGCAGG +GAATGCGCGGTTCGAGTAGGCCGTGGTTTGCGGCCGTTCTCGGATAAGCACAAAATATCG +CCCTACTCGTGTGTCAAAAAGGAAAAGTCT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out2.k1.11176.children.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,20 @@ +>C_II_XVIIIb-87/2 +AGAAGTTGTCACAAACTTTGTGAAGCTAACTTATCACCATATCCGGAGAATCATCTGACC +TTACCTCTCTCGATACGGCTATTACTTGAATGTCACCTTGTACCATGCAGGCAAAACGAC +AGTGTGATCTTGCTGCAGCAAGTTGGATTG +>C_II_XVIIIb-53/2 +CTCTGAGACTTTAGTGCCCAGAACGTCACAACCTAAAGGAGTTGCACTCACACTGCAGGA +CTTCCGACTTTGGGTGTCATCTAAGTTGATAGAACGCAGAGTAGAAAAGAATACCCTCCC +TGTCGCAGATACCCGAAGCACACCAAGTGC +>C_II_XVIIIb-37/2 +GATAGGTAAGGTCTGATGATTCTGCGGATCTGGTGTTAACTCAGCTGCACCAAGCTAGGG +ATAACTTCTTTAAGGAATTAATTCATGTCAATCATCTGATTGGTCATAACTTGAAAGATC +GTGAAACCATCAGGTCAGACACATTCTTCA +>C_II_XVIIIb-25/2 +CAAAGACGTGGGGCATCTTATGAACTAACGTTACTAGCTTGGCGACTGCGGATCTTGTTC +TTGCTGCTACAATCAGATGCCTTTGGACCTGTTTTATATGGAGCCATGCAAACTTGGCTC +TGGACCACTTTGAGGGAAACCAGAATGCCG +>C_II_XVIIIb-23/2 +ATGACCAGCATTATATCCGAGGGCTAGGCCGAGAACTCATAGTAAACGACACCAGTGATG +TCACATCATTTTATCCTTCCGCATATCAAGAACACTTGAATTTTATCCCGGCGCCTTCTA +CAGGGTCTGGTTGCACTCGGATACCCTCAT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out2.k1.e10386.children.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,252 @@ +>C_II_XVIIIb-101/2 +GGGACCGCGTGCTAGCCCATAGCAAATGCCTCTCCACAGGTTGCTAAGATACTCTGGAGC +CAAACCGCGCACCTGCGGAGCGTGAAAGTCATCATTCAAGCTGGCACCCAGCGCGCTGTC +GCAGTGACCGCTGATCATGAAGTCACCTCT +>C_II_XVIIIb-99/2 +TAGTGTTATCAGTCAGCTCCATGTTCCTTGGAAGATGAAAGCAAGTAAACTGCTCATCTC +CACTGTCACACTTTGTGCACCCTCCACTGACACTGAGAATCTCTCCTTCCACAAGTTCTA +TGGTGTCAGGATTAGAGACGCCTAGTATCT +>C_II_XVIIIb-97/2 +GTCCCTAGCGTCTTCGTCTACTGAGGAAATATTCGCCCATTCACTCTCACCTCCTTCTCT +TTAAGTGGATATGATACTGCCACACTGTCATCTCTTAGGTACTCAAGGGTTGTCAAGTAT +TCCATCTCCTTGTATGGATCAAAATCATTT +>C_II_XVIIIb-95/2 +GTTCTTGTACAGTTCAGTCATGTATAGGACGGTGTTGTTTAGGCCTCTCACTCTCAGATA +GTAGAGTTGGTAAGAACAGTCAAGGAGCACCTCGAGTGCCGCATATTCGAATAAGCGGAC +CACATCTGAATTCTGGGCCTCACTGATCCA +>C_II_XVIIIb-93/2 +TAAAATTCGCTTCTTTCGGATGAGATGAACCCGGCACGGCGACATTTCGGACCAACACCA +ACACAGTTTCTAAATTCGGTCGTCTATAGGAATCTACAAGCGGAAGTTCCATGTAAAGAA +GGATTTGTCCAGGAGTTCTACCCATTATGG +>C_II_XVIIIb-91/2 +ATCAACAACATAGGTACGCGAAACCTGGTAGAAGGTTTGGAGCCCATATTGCGTTCATAA +TGTGCTAGTTAGGTTCCAGACTCTTCTACACGTGTTTTTTCTAATTAGATAGACAGGTGA +ACTAGCTATAAGCAATCAAGATAGACTATT +>C_II_XVIIIb-89/2 +TGTGTGATTTTACAAGGGTGCGAGCCTGTAGAGGGTTGTGATGGCAATCAACCATTCAGT +GCAAGGCGTTTGATCTTCCTGATCTCTTCAATCTACCTGGCTGCATCCAGCTTGCTCAGG +AGCTTAGCTGAGGAGCTTGGATGCATTGGG +>C_II_XVIIIb-87/2 +AGAAGTTGTCACAAACTTTGTGAAGCTAACTTATCACCATATCCGGAGAATCATCTGACC +TTACCTCTCTCGATACGGCTATTACTTGAATGTCACCTTGTACCATGCAGGCAAAACGAC +AGTGTGATCTTGCTGCAGCAAGTTGGATTG +>C_II_XVIIIb-85/2 +GGAAGTGCACTTGTCGGCTAGGTTGTGCAGTGGGGTGGGTCGGGGAGCGTAGGAGAGTTC +TGGGAGGATGGTTTGGGGTGACCTTATGGGGGCAGGCTGGGTGTTGCCGTTCAGTACCCC +CAGTCAGTGTCATTATCTTGGGATGGCCCA +>C_II_XVIIIb-83/2 +TTAAGGCATGTTGATGCCGTGTATGCTGCCTTGATGCTGCTTGAACTCACTGGGGTTACT +CGACTGCGGGATATGTTAACGAATACTGCAGACACGGGATTGAGTCTTGCCTGTCCATCA +TCAAGCATTGTCCCGAATACCCCTCGTAGG +>C_II_XVIIIb-81/2 +ATTCAGCAGAGACCGCGTGAAGTATCGCAGTTCCACAAGGCAAGACCAAGGCACTGAGCA +CTGCATGGGAGAAGCACGGAAGTGTCCAATCAAATGTCGGCCAGGACGCCCCCGACCAAC +AAGCCAGACCAGACAAACAGCCGTCCGCAC +>C_II_XVIIIb-79/2 +AGAAGCACGGGCGTGTCCAATCAAATGCAGGCCAGGACGCCCCCGACCAACAAGCCAGAC +CAGACAAACAGCCGTCCGCACCCGAGCAGGCGGCCCAACACAGTGACCCGCCGGCCACAT +CCACCGAGTCCTCTCCCGCCCAGGCTGCAG +>C_II_XVIIIb-77/2 +GCAATTTTGTTCAGAGATGATGTTTTCTTGTCTAGTAGATCCAATCACCCATTAGTCTCC +TCTAATATGTGTTCGCTGACGCTAGCAGACTATGCCCGGAACAGAAGCTGGTTACCTTTG +ACAGGGGGTAGGAAGATACTAGGCGTATCT +>C_II_XVIIIb-75/2 +CATTGCTTCTACACCTGTGGCTCATGTCCAGCTACCTGTCGACTTTGTGCAAATGATGAT +GTCTATGATGGAGGCATTATCACAGAAGGTAAGTAAAGTTGACTATCAACTAGATCTAGT +CTTAAAACAGACATCTTCTATCCCTATGAT +>C_II_XVIIIb-73/2 +TACAGTCAAGGAACGGTACTTGAGGGAACAACGGTGCCAGGATAGTGTCTCTGTCCTCTC +TTTCCCTGATCAGATTAAGACTCTTCCTGGACATGTAATATAGATTGGCGGGAAATGTGA +TTATGTTGGGAGATATGATAGAGTTCACTT +>C_II_XVIIIb-71/2 +GTAATAAGAGCAGATATGCCGGTCAGTCTTACATTGACTTTGTCTAGCTTGCTGTTACTT +TTTGCCAACTTATCCAAGGCATTGCTTATTGAATTGTTGACATTTCCAAGCTCAATTGAT +ATATCGAGATTGCCGGTCACGATGACTTGA +>C_II_XVIIIb-69/2 +CGAGGTCTATATGTTGACTGCCTTATCTCCTGTTATTACAATCCCCGCAGCTGCAAGGGG +CCTGCCATCAAGGGAGTTTGTCAGACAGACGCAGCTTAATATCAGCATAGTCCGAATGAT +CAGCATCAGAGGTACTGGAATCCTGGTAGA +>C_II_XVIIIb-67/2 +CCCTTTCACCTGCCTTCAGCCATGTAACCCCATCCGACCGAGCCAACACAGGCGTAACTC +GGTTCGCCAACAATCCACTCAGAGCCCGAGGTATTAGAAAAAAATACGGGTAGAAGGGAG +ACACCTGGAGACCAGGACGAGTCACCAAAG +>C_II_XVIIIb-65/2 +GCAAATACCACTTTGCCAGGGCCTTTATGTGCACATCAGTCTGGAGGCTTGGAGTAGAGT +ATGCTCAGGCTCAGGGAAGTAGCATCAATGAAGACATGGCTGCTGAACTAAAACTGACTC +CGGCAGCAAGGAGAGGTCTGGCGGCTGCTG +>C_II_XVIIIb-63/2 +CACCTCGATTTCCGCATATTCGAATAAGCAGACAACATCTGAATTCTGGGCCTCACTGAT +CCAATTTCGTGTGTTGTCATACACTATTATAGCATCATTCTTGATAGAGGTATCTTCATC +ATAAGAAACCACTGATTGGCCGATCAACTT +>C_II_XVIIIb-61/2 +GTTAGTCCTCTGACTGTCCGATAGTAGAGTTGGTAAGAACAGTCAAGGAGCACCTCGAGT +GCCGCATATTCGAAAAAGCGGTCCACATCTGAATTCTGGGCCTCACTGATCCAATTTCGT +GTGTTGTCATACACTATTATAGCATCATTC +>C_II_XVIIIb-59/2 +CCTTGTATGTATAAAAATCATTTGTTTCTAATATCTCAATCAAGAGGCGATTAGTTGAGG +TCGCCTCTTTTATCTGTTTCTTTTGGTCCTCAGAGAGGAGGTTCCGCCTGAATGAGGCGA +GCCAGTTATCTTTCGGATGTGCGATTGCCT +>C_II_XVIIIb-57/2 +CTGGTATGGGCCACTTTATTAAGAAAAACTAAAAAAAGCATTGTAATATAAAGGAAACCA +ACACACAAAAGAAAGCACGGGTAGGACATGGCAGGCTCTGGTCCCGAAAGGGCAGAGCAC +CAGCTTATCCTACCAGAGTCACATCTATCC +>C_II_XVIIIb-55/2 +ATGCAGTGGGCGGGAGGTGATTAATGCACGGGCCGTTTCCTTCTCCACTGCCATATCAGG +CCCACCTGCAGTAGCAGATTTAACTAGGTCTGAAGGCTGCTGTACCGGTTGTGAGAGTTT +ATTGAGTGTCATTTCACCCCCTTGTGTCAC +>C_II_XVIIIb-53/2 +CTCTGAGACTTTAGTGCCCAGAACGTCACAACCTAAAGGAGTTGCACTCACACTGCAGGA +CTTCCGACTTTGGGTGTCATCTAAGTTGATAGAACGCAGAGTAGAAAAGAATACCCTCCC +TGTCGCAGATACCCGAAGCACACCAAGTGC +>C_II_XVIIIb-51/2 +TTAAGGATGGTAACCTCAATTAAGTTCATGTATAATCCTAGCCCTATATCAGAGAAGGAT +TTTGCAAGACTCGACTTAGCTATCTTCAAGAGTTATGAGCTTAATTTGGAGTCATATTCC +ACACTGGAGCTGATGAACATTCTTTCAATC +>C_II_XVIIIb-49/2 +GACCCGATTTCCTTGGAAGAACGGTGCAATCTGTTCAGCTAGAATCCCTTCTGCCATTAC +CTGGCAGTTCCTTAGCTTCTTTGTCAACTTAGCAAAAATTCTCCCATTCACTTTCACCTC +CTTCTCGTTAAGTGAATAGGATACTGCCAC +>C_II_XVIIIb-47/2 +TCGCACTCAATATCTTTCGCGATGCCCGGTGTTAAACTGAATAACAACACAAGCCCAGAT +CCCGTGCTGCCGGGTAGCCACAATCTAACAACACTGACATGATTAGTCTGAGTCCTGTTT +TTGGCCACTTTAGTAAGAAAAAATAAAAAA +>C_II_XVIIIb-45/2 +GATCTTGGATGTTACAATACTAGGGCCAAGAGTCAAAGATATCAACAAAATAGGTGATGT +AATTAGCCTAGTACTCAGAGGTAAGGTTTCCCTGGAGGACCTCATCCCACTAAGGACATA +CCTGAAGCGCAGTACCTGCCCTAAGTATCT +>C_II_XVIIIb-43/2 +GGGGCAGCGAATGAGAGAGGATATGGGGCGCCTGTTCATGACCCAGATTATATCGGAGGG +ATAGGCAGAGAACTCATAGTAGACGACACCAGTGATGTCACATCATTTTATCCTTCCGCA +TATCAATAACACTTGAATTTTATCCCGGCG +>C_II_XVIIIb-41/2 +GTCCTTCTCCACTGCCATATCAGGCCCACCTGCAGTAGCAGATTTAACTAGCTCTGAAGG +GTGCTGTACCGGTTGTGAGAGTTTATTGAGTGTCATTTCACCCCCTTGTGTCACATAAGG +AGATGGGTCTCCAGGGCCCGAAATTAAAAC +>C_II_XVIIIb-39/2 +AAGGCCGCGTGTCAAGGCCGCTACAATATGCGGGAAGGTCATTGGGCAGCTTCATGCCGA +TTCAGCGGAGATCTCACACGATGTCATGGTGAGAGAGTGCAAGAGTTTATCTGCCCTCGA +ATTTGAGCCATGCATAGAGTATGACCCCGT +>C_II_XVIIIb-37/2 +GATAGGTAAGGTCTGATGATTCTGCGGATCTGGTGTTAACTCAGCTGCACCAAGCTAGGG +ATAACTTCTTTAAGGAATTAATTCATGTCAATCATCTGATTGGTCATAACTTGAAAGATC +GTGAAACCATCAGGTCAGACACATTCTTCA +>C_II_XVIIIb-35/2 +CTGAGTGGTTCGTTAGCATCTTCGCTAACAGCAATCCGAAGACACAATACCGCAAAATTC +CATCTATCCTCTGGATCATCACTGTTAAGAGTAAATACTGGGACTTCAACTTTTAAAGTG +CTCCCTTTCTCTCCTCCTCCGTGAGTTCCG +>C_II_XVIIIb-33/2 +CATAGGGATAGAACATGTATGTTTTAAGACGAGATCTAGTTGATAGTCAACTTTACTTAC +CTTCTGTGATAATGCCTCCATCATAGACATCATCATTTGCACAAAGTCGACAGGTAGCTG +GACATGATCCACAGGTGCAGGAGCATTGTC +>C_II_XVIIIb-31/2 +GTGCATCAATACTCGAATGAGTAAGGGTACAGCCAATGCTTTCTCCTCTGTCTCATTGTC +CTCCGTATGCACTCCGGATAATAAAGGGTTTGAACAAGTCTCAAATAAGACCTTTTGTGT +ATGCTTCTTGAGGACAATATTTGGGCTTGC +>C_II_XVIIIb-29/2 +CTCAGTTGCACAAACTCGACAGGTAGCTGCATATGATCCACAGGTGCAGGAGTATTGTCT +TGGTTCTGCCCTGACTGGGGCACATGAGGGGTTGCACCAGCTGATGGTTGTGACTCCTTC +CATAGTCCATGATATGCTGTGTTCGCGTCT +>C_II_XVIIIb-27/2 +TATAGGAATCTACAAGCGGAAGTGTAATGTAAATAAGGATTTGTCCAGGAGTTCTACCCA +TTATGGAGAGAGAATGCAGAAGAAAGCGACCTGACTTCAGATAGAGCAGTGGGATATATC +ACATCTGTAGTGCCCCACAGGTCTGTAGCA +>C_II_XVIIIb-25/2 +CAAAGACGTGGGGCATCTTATGAACTAACGTTACTAGCTTGGCGACTGCGGATCTTGTTC +TTGCTGCTACAATCAGATGCCTTTGGACCTGTTTTATATGGAGCCATGCAAACTTGGCTC +TGGACCACTTTGAGGGAAACCAGAATGCCG +>C_II_XVIIIb-23/2 +ATGACCAGCATTATATCCGAGGGCTAGGCCGAGAACTCATAGTAAACGACACCAGTGATG +TCACATCATTTTATCCTTCCGCATATCAAGAACACTTGAATTTTATCCCGGCGCCTTCTA +CAGGGTCTGGTTGCACTCGGATACCCTCAT +>C_II_XVIIIb-21/2 +CACAAGCAAAACAAAACACATCACTAGGGCTCGGAAACAATACCCTTGATCAGATGAGGG +CCAATACAAGAGCATGACCTCAAATGAGAATTGGATGCACGTACAGCAGCAGCCTGTATG +TCAATTCTGACAGCCTGTCAGATCGAAAAC +>C_II_XVIIIb-19/2 +ACTAGATCTAGTTGATAGTCAAGTTTACTTACCTTCTGTGATAATGCCTCCATCATAGAC +ATCATCATTTGCACAAAGCCGACAGGTAGCTGGACATGATCCACAGGTGCAGGAGTATTG +TCTTGGTTCTGCCCTGACTGGGGCACATGA +>C_II_XVIIIb-17/2 +GTACATATTCCCTGGATATGAGCCTGAGACCACGGGTCTGGTGCATGAGACTAATAGTTT +CGCAGACATTTCGATGAAATCTATATCTGCCAGCTGGTGTGACCCGTCATGGTTAATTAG +GCCTACTGCATTCAACCTTGGGTGTATAAT +>C_II_XVIIIb-15/2 +AACTGGCGCCCCACATCCACTAGTATTCACAGACCCGTTGATTTGATAAGAGAGGGATGT +TATTGCATTCATAATTATAGATTCGGTGTTTAGTAGCGCTAGCGGAGATTCAAGAGCCAC +CTGTTTATATATCCTATCTGTCACATCTTG +>C_II_XVIIIb-13/2 +TGACCTCCAGGATCTGTAGTGTGCACTGTTTAAGTGATGTTCTCTTTTTCCCGTCTGTAG +AGAGGTTATAAGGAGTAAATAAGAATACTGTGTCAGCAAGGTCCCCCTCGGCATCCATGT +AGATCACAGATCTAATGACTGTGTCAATGT +>C_II_XVIIIb-11/2 +CACCTCATGCCATCGTCGTGTCACGGAAATCCTATCTAGTCCCCTACCGAGGCTGATGAA +GTTCTTGGGAGAAAATATTGATGCTGCACTGATCGCAGCAGGGGGACAGCCCGTCCGTCC +CTTTTGTGCAGAAAGTTTGGTGAGCACACT +>C_II_XVIIIb-9/2 +ACAATGCCCGGTTCGGGGGATTTAGAATCGTTCCATTACTAGTTGAGATCCTCAAGGATG +ATAGAGTTTAAGGGATTAGACCCAGGCAATTGAATCAGCCATAGGACGGCTGGAAGAATG +ATATGGCACTGAATATCTTTCGCGATGCCA +>C_II_XVIIIb-7/2 +CTCATGAACCGTTGCTTGAGCTTCATCCAGTACAAGACATCGGTGCTCGGGTGAAAGACC +CGTTAACCCGACAACCTGCATCATTTATACAAGAGCTAGATTTGAGTGCTCCAGCAAGGT +ATGATGCATTTACGCTTAGCGAGATTTGCC +>C_II_XVIIIb-5/2 +ATCTCCACAGCAATTTTTGCTTGTGTATCCGGGAAGCGCCTGTTGCGGTTCCTTTCGAGC +TACTTGGATTGGCACCAGAATTAAGGATGGTAACCTCAAATAAGTTCATGTATGATCCTA +GCCCTATATCAGAGAAGGATTTTGCAAGAC +>C_II_XVIIIb-3/2 +TCAGCTTGTATCCGTTCTGCCATTACCTGGCGGGTCCTTAGCTTCTTTGTCAACTTAGCA +AAAATTCGCCCATTCACTTTCACCTCCTTCTCTTTAAGTGAATATGATACTGCCACACTG +TCATCTCTTAGGTACTCAAGGGTTGTCAAG +>C_II_XVIIIb-1/2 +AAAAGTGAGGGGGCGAACTTTTGCTAAGTTTACACAGAAGCTAAGGAACTGCCAGGTAAT +GGCAGAAGGGATTCTAGCTGACCAGATTGCTCCTTTCTTCCAAGGAAATGGGGTCATTCA +AGATAGCATATCCTTGACTAAGAGTATGTT +>HQ630064-957/2 +CTGATCCAGTGGCCCTTCGTTACTCACGAAGTATCTGTGCATTTATACGTGACGCCACGC +TAACAAGGAAGCGCCGCGCAATTTGCTCACGGTTGGGCGTAGCTCTGTGCTCGAGCGCAC +GCGAAAAATTCTCGTCTCATTTCCCCTTAC +>HQ630064-665/2 +TCGAATAGGCCGTGGTTTGCGGCCGTACTCGTAGAAGCACAAAATATCGCCCTACTCGTG +TGTCAAAAAGGAAAAGTCTTAATGGGCTGTGAAGTGATCTGGAGATCAAAGCGGCACTCT +CTTTGAGAAGTCTCTTCTCGAGACTCTCTC +>HQ630064-403/2 +TACGGTGGGGGTCACAACAATTTAACCAATGAAATGTTTCTTTATTATAAGAGCGGTATA +GCAGATTTAATAAAATACCTTTTTTGAAAAAATATTGACCTGTCTCGCGTTGTAGATTCT +TCGCATCCGCGTTCCGTCATAATTCCAAGA +>HQ630064-343/2 +CTCCCGTGCATGTATACGTGACGCCACGCTAACAAGGAAGCGCCGCGCAATTTGCTCACG +GTTGGGCGTAGCTCTGTCCTCGAGCGCACGTGAAAAATTCTCGTCTCATTTCCCCTTACC +ACACCACACCAAACACTGGTAGTAAAACCG +>HQ630064-307/2 +TTTTTCACAGACGGGGACGTTCTCATCTAACTTCGGGGATCCTGGGGATATATTTTATAG +CGATGTAGTAGGGGGAGATGGCCCAATATTCGAAGATCCAGAGGACATTTGTACCCGTAG +ACCGGAATATGGAGAAAAGCTAAAAGAACA +>HQ630064-241/2 +CATAATCATTTACAAAACGCGGGACCTCGACAATATGCGGGAAAATCTAACAGCAATCTA +TCTTGGAGAATACGCTCTTCCGAAAGACCGTGGGAAAAAATTAGAAAATTTACCCACGGA +CCCAAGTCCCGCTTTGCCATTTTAGGAAAA +>HQ630064-217/2 +AAATCGCATGTCACACCCCAGCGTCGGAAAAACCGCCCGAGACGAAGTTGCTTCTTCTTT +GGGGCCCCCTCTTTTTTAAGCTACAAAATTTGCTTTGAGGCCTTTTCCTTTCTTTCTTTC +TTTCGCGTGTGATTGACGGGGGTTTACGTG +>HQ630064-199/2 +CCGTTAGCACTTAAGTAACCGGAGCTTGGCAACACCAAGGCCTCATCCCAACATCCAAAG +CACTCGAGCAAACGCAGGAGTAGCAAATCTCGCTATTTCAAAGCTTCAGAATCGTGTAAT +ACACCGTCACGCTTGCTATCTTTCTCATCT +>HQ630064-111/2 +GAAACTTGAATAAGAGCTCCCCAACTACGCTGCTAGAACTAGCAAATTTTATGCTCGCCA +ACAAGGTGTTGGAGTTCTGCGACCACGGAGAGATGGCCGGCAGAGCACAATATTATATAA +GTACTCCATCGATGATCATTACGACCTCCA +>HQ630064-105/2 +TTATTAAATTGTTATTTCCACCACCGCAGAGCAATACCGTGATGTTCTTTACGCCCTCTT +CTCCGGTCGTTGTGTTGTCCATACATCTCGTCTTCCCTCAGCGCTGCCCGCAAATGGTTC +AACGTATGTCGGTTGGTTGACTATGTCCTA +>HQ630064-11/2 +TGGGCGTAGTTCTGTCCTCGAGCGCACGCGAAAAATTCTCGTCTCATTTCCCCTTACCAC +ACCACACCAAACACTGGTAGTAAAATCGCATAATGCACCCCAACGTCGGAAACACAGCCC +GAGACGATGTTGCTTCTTCTTTAGGGCCCC +>HQ630064-3/2 +CCACAGTTATTTGCAATAGGACTCGAGTGAGTTTTAAGAAGAGACTTCTCAAAGAGAGAG +CCGCTTTGATCTCCAGATCACTTCACAGCCCATTAAGACTTTTCCTTTTTGACACACGAG +TAGGGCGATATTTTGTGCTTATCCGAGAAC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out2.k2.11176.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,28 @@ +>C_II_XVIIIb-65/2 +GCAAATACCACTTTGCCAGGGCCTTTATGTGCACATCAGTCTGGAGGCTTGGAGTAGAGT +ATGCTCAGGCTCAGGGAAGTAGCATCAATGAAGACATGGCTGCTGAACTAAAACTGACTC +CGGCAGCAAGGAGAGGTCTGGCGGCTGCTG +>C_II_XVIIIb-57/2 +CTGGTATGGGCCACTTTATTAAGAAAAACTAAAAAAAGCATTGTAATATAAAGGAAACCA +ACACACAAAAGAAAGCACGGGTAGGACATGGCAGGCTCTGGTCCCGAAAGGGCAGAGCAC +CAGCTTATCCTACCAGAGTCACATCTATCC +>C_II_XVIIIb-49/2 +GACCCGATTTCCTTGGAAGAACGGTGCAATCTGTTCAGCTAGAATCCCTTCTGCCATTAC +CTGGCAGTTCCTTAGCTTCTTTGTCAACTTAGCAAAAATTCTCCCATTCACTTTCACCTC +CTTCTCGTTAAGTGAATAGGATACTGCCAC +>C_II_XVIIIb-45/2 +GATCTTGGATGTTACAATACTAGGGCCAAGAGTCAAAGATATCAACAAAATAGGTGATGT +AATTAGCCTAGTACTCAGAGGTAAGGTTTCCCTGGAGGACCTCATCCCACTAAGGACATA +CCTGAAGCGCAGTACCTGCCCTAAGTATCT +>C_II_XVIIIb-17/2 +GTACATATTCCCTGGATATGAGCCTGAGACCACGGGTCTGGTGCATGAGACTAATAGTTT +CGCAGACATTTCGATGAAATCTATATCTGCCAGCTGGTGTGACCCGTCATGGTTAATTAG +GCCTACTGCATTCAACCTTGGGTGTATAAT +>C_II_XVIIIb-9/2 +ACAATGCCCGGTTCGGGGGATTTAGAATCGTTCCATTACTAGTTGAGATCCTCAAGGATG +ATAGAGTTTAAGGGATTAGACCCAGGCAATTGAATCAGCCATAGGACGGCTGGAAGAATG +ATATGGCACTGAATATCTTTCGCGATGCCA +>C_II_XVIIIb-1/2 +AAAAGTGAGGGGGCGAACTTTTGCTAAGTTTACACAGAAGCTAAGGAACTGCCAGGTAAT +GGCAGAAGGGATTCTAGCTGACCAGATTGCTCCTTTCTTCCAAGGAAATGGGGTCATTCA +AGATAGCATATCCTTGACTAAGAGTATGTT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out2.k2.11176.max2.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,8 @@ +>C_II_XVIIIb-65/2 +GCAAATACCACTTTGCCAGGGCCTTTATGTGCACATCAGTCTGGAGGCTTGGAGTAGAGT +ATGCTCAGGCTCAGGGAAGTAGCATCAATGAAGACATGGCTGCTGAACTAAAACTGACTC +CGGCAGCAAGGAGAGGTCTGGCGGCTGCTG +>C_II_XVIIIb-57/2 +CTGGTATGGGCCACTTTATTAAGAAAAACTAAAAAAAGCATTGTAATATAAAGGAAACCA +ACACACAAAAGAAAGCACGGGTAGGACATGGCAGGCTCTGGTCCCGAAAGGGCAGAGCAC +CAGCTTATCCTACCAGAGTCACATCTATCC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out2.k2.11176.parents.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,76 @@ +>C_II_XVIIIb-99/2 +TAGTGTTATCAGTCAGCTCCATGTTCCTTGGAAGATGAAAGCAAGTAAACTGCTCATCTC +CACTGTCACACTTTGTGCACCCTCCACTGACACTGAGAATCTCTCCTTCCACAAGTTCTA +TGGTGTCAGGATTAGAGACGCCTAGTATCT +>C_II_XVIIIb-97/2 +GTCCCTAGCGTCTTCGTCTACTGAGGAAATATTCGCCCATTCACTCTCACCTCCTTCTCT +TTAAGTGGATATGATACTGCCACACTGTCATCTCTTAGGTACTCAAGGGTTGTCAAGTAT +TCCATCTCCTTGTATGGATCAAAATCATTT +>C_II_XVIIIb-93/2 +TAAAATTCGCTTCTTTCGGATGAGATGAACCCGGCACGGCGACATTTCGGACCAACACCA +ACACAGTTTCTAAATTCGGTCGTCTATAGGAATCTACAAGCGGAAGTTCCATGTAAAGAA +GGATTTGTCCAGGAGTTCTACCCATTATGG +>C_II_XVIIIb-87/2 +AGAAGTTGTCACAAACTTTGTGAAGCTAACTTATCACCATATCCGGAGAATCATCTGACC +TTACCTCTCTCGATACGGCTATTACTTGAATGTCACCTTGTACCATGCAGGCAAAACGAC +AGTGTGATCTTGCTGCAGCAAGTTGGATTG +>C_II_XVIIIb-85/2 +GGAAGTGCACTTGTCGGCTAGGTTGTGCAGTGGGGTGGGTCGGGGAGCGTAGGAGAGTTC +TGGGAGGATGGTTTGGGGTGACCTTATGGGGGCAGGCTGGGTGTTGCCGTTCAGTACCCC +CAGTCAGTGTCATTATCTTGGGATGGCCCA +>C_II_XVIIIb-75/2 +CATTGCTTCTACACCTGTGGCTCATGTCCAGCTACCTGTCGACTTTGTGCAAATGATGAT +GTCTATGATGGAGGCATTATCACAGAAGGTAAGTAAAGTTGACTATCAACTAGATCTAGT +CTTAAAACAGACATCTTCTATCCCTATGAT +>C_II_XVIIIb-65/2 +GCAAATACCACTTTGCCAGGGCCTTTATGTGCACATCAGTCTGGAGGCTTGGAGTAGAGT +ATGCTCAGGCTCAGGGAAGTAGCATCAATGAAGACATGGCTGCTGAACTAAAACTGACTC +CGGCAGCAAGGAGAGGTCTGGCGGCTGCTG +>C_II_XVIIIb-57/2 +CTGGTATGGGCCACTTTATTAAGAAAAACTAAAAAAAGCATTGTAATATAAAGGAAACCA +ACACACAAAAGAAAGCACGGGTAGGACATGGCAGGCTCTGGTCCCGAAAGGGCAGAGCAC +CAGCTTATCCTACCAGAGTCACATCTATCC +>C_II_XVIIIb-49/2 +GACCCGATTTCCTTGGAAGAACGGTGCAATCTGTTCAGCTAGAATCCCTTCTGCCATTAC +CTGGCAGTTCCTTAGCTTCTTTGTCAACTTAGCAAAAATTCTCCCATTCACTTTCACCTC +CTTCTCGTTAAGTGAATAGGATACTGCCAC +>C_II_XVIIIb-45/2 +GATCTTGGATGTTACAATACTAGGGCCAAGAGTCAAAGATATCAACAAAATAGGTGATGT +AATTAGCCTAGTACTCAGAGGTAAGGTTTCCCTGGAGGACCTCATCCCACTAAGGACATA +CCTGAAGCGCAGTACCTGCCCTAAGTATCT +>C_II_XVIIIb-43/2 +GGGGCAGCGAATGAGAGAGGATATGGGGCGCCTGTTCATGACCCAGATTATATCGGAGGG +ATAGGCAGAGAACTCATAGTAGACGACACCAGTGATGTCACATCATTTTATCCTTCCGCA +TATCAATAACACTTGAATTTTATCCCGGCG +>C_II_XVIIIb-33/2 +CATAGGGATAGAACATGTATGTTTTAAGACGAGATCTAGTTGATAGTCAACTTTACTTAC +CTTCTGTGATAATGCCTCCATCATAGACATCATCATTTGCACAAAGTCGACAGGTAGCTG +GACATGATCCACAGGTGCAGGAGCATTGTC +>C_II_XVIIIb-29/2 +CTCAGTTGCACAAACTCGACAGGTAGCTGCATATGATCCACAGGTGCAGGAGTATTGTCT +TGGTTCTGCCCTGACTGGGGCACATGAGGGGTTGCACCAGCTGATGGTTGTGACTCCTTC +CATAGTCCATGATATGCTGTGTTCGCGTCT +>C_II_XVIIIb-19/2 +ACTAGATCTAGTTGATAGTCAAGTTTACTTACCTTCTGTGATAATGCCTCCATCATAGAC +ATCATCATTTGCACAAAGCCGACAGGTAGCTGGACATGATCCACAGGTGCAGGAGTATTG +TCTTGGTTCTGCCCTGACTGGGGCACATGA +>C_II_XVIIIb-17/2 +GTACATATTCCCTGGATATGAGCCTGAGACCACGGGTCTGGTGCATGAGACTAATAGTTT +CGCAGACATTTCGATGAAATCTATATCTGCCAGCTGGTGTGACCCGTCATGGTTAATTAG +GCCTACTGCATTCAACCTTGGGTGTATAAT +>C_II_XVIIIb-9/2 +ACAATGCCCGGTTCGGGGGATTTAGAATCGTTCCATTACTAGTTGAGATCCTCAAGGATG +ATAGAGTTTAAGGGATTAGACCCAGGCAATTGAATCAGCCATAGGACGGCTGGAAGAATG +ATATGGCACTGAATATCTTTCGCGATGCCA +>C_II_XVIIIb-5/2 +ATCTCCACAGCAATTTTTGCTTGTGTATCCGGGAAGCGCCTGTTGCGGTTCCTTTCGAGC +TACTTGGATTGGCACCAGAATTAAGGATGGTAACCTCAAATAAGTTCATGTATGATCCTA +GCCCTATATCAGAGAAGGATTTTGCAAGAC +>C_II_XVIIIb-3/2 +TCAGCTTGTATCCGTTCTGCCATTACCTGGCGGGTCCTTAGCTTCTTTGTCAACTTAGCA +AAAATTCGCCCATTCACTTTCACCTCCTTCTCTTTAAGTGAATATGATACTGCCACACTG +TCATCTCTTAGGTACTCAAGGGTTGTCAAG +>C_II_XVIIIb-1/2 +AAAAGTGAGGGGGCGAACTTTTGCTAAGTTTACACAGAAGCTAAGGAACTGCCAGGTAAT +GGCAGAAGGGATTCTAGCTGACCAGATTGCTCCTTTCTTCCAAGGAAATGGGGTCATTCA +AGATAGCATATCCTTGACTAAGAGTATGTT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/out2.k2.exclude_both.fa Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,176 @@ +>C_II_XVIIIb-101/2 +GGGACCGCGTGCTAGCCCATAGCAAATGCCTCTCCACAGGTTGCTAAGATACTCTGGAGC +CAAACCGCGCACCTGCGGAGCGTGAAAGTCATCATTCAAGCTGGCACCCAGCGCGCTGTC +GCAGTGACCGCTGATCATGAAGTCACCTCT +>C_II_XVIIIb-95/2 +GTTCTTGTACAGTTCAGTCATGTATAGGACGGTGTTGTTTAGGCCTCTCACTCTCAGATA +GTAGAGTTGGTAAGAACAGTCAAGGAGCACCTCGAGTGCCGCATATTCGAATAAGCGGAC +CACATCTGAATTCTGGGCCTCACTGATCCA +>C_II_XVIIIb-91/2 +ATCAACAACATAGGTACGCGAAACCTGGTAGAAGGTTTGGAGCCCATATTGCGTTCATAA +TGTGCTAGTTAGGTTCCAGACTCTTCTACACGTGTTTTTTCTAATTAGATAGACAGGTGA +ACTAGCTATAAGCAATCAAGATAGACTATT +>C_II_XVIIIb-89/2 +TGTGTGATTTTACAAGGGTGCGAGCCTGTAGAGGGTTGTGATGGCAATCAACCATTCAGT +GCAAGGCGTTTGATCTTCCTGATCTCTTCAATCTACCTGGCTGCATCCAGCTTGCTCAGG +AGCTTAGCTGAGGAGCTTGGATGCATTGGG +>C_II_XVIIIb-83/2 +TTAAGGCATGTTGATGCCGTGTATGCTGCCTTGATGCTGCTTGAACTCACTGGGGTTACT +CGACTGCGGGATATGTTAACGAATACTGCAGACACGGGATTGAGTCTTGCCTGTCCATCA +TCAAGCATTGTCCCGAATACCCCTCGTAGG +>C_II_XVIIIb-81/2 +ATTCAGCAGAGACCGCGTGAAGTATCGCAGTTCCACAAGGCAAGACCAAGGCACTGAGCA +CTGCATGGGAGAAGCACGGAAGTGTCCAATCAAATGTCGGCCAGGACGCCCCCGACCAAC +AAGCCAGACCAGACAAACAGCCGTCCGCAC +>C_II_XVIIIb-79/2 +AGAAGCACGGGCGTGTCCAATCAAATGCAGGCCAGGACGCCCCCGACCAACAAGCCAGAC +CAGACAAACAGCCGTCCGCACCCGAGCAGGCGGCCCAACACAGTGACCCGCCGGCCACAT +CCACCGAGTCCTCTCCCGCCCAGGCTGCAG +>C_II_XVIIIb-77/2 +GCAATTTTGTTCAGAGATGATGTTTTCTTGTCTAGTAGATCCAATCACCCATTAGTCTCC +TCTAATATGTGTTCGCTGACGCTAGCAGACTATGCCCGGAACAGAAGCTGGTTACCTTTG +ACAGGGGGTAGGAAGATACTAGGCGTATCT +>C_II_XVIIIb-73/2 +TACAGTCAAGGAACGGTACTTGAGGGAACAACGGTGCCAGGATAGTGTCTCTGTCCTCTC +TTTCCCTGATCAGATTAAGACTCTTCCTGGACATGTAATATAGATTGGCGGGAAATGTGA +TTATGTTGGGAGATATGATAGAGTTCACTT +>C_II_XVIIIb-71/2 +GTAATAAGAGCAGATATGCCGGTCAGTCTTACATTGACTTTGTCTAGCTTGCTGTTACTT +TTTGCCAACTTATCCAAGGCATTGCTTATTGAATTGTTGACATTTCCAAGCTCAATTGAT +ATATCGAGATTGCCGGTCACGATGACTTGA +>C_II_XVIIIb-69/2 +CGAGGTCTATATGTTGACTGCCTTATCTCCTGTTATTACAATCCCCGCAGCTGCAAGGGG +CCTGCCATCAAGGGAGTTTGTCAGACAGACGCAGCTTAATATCAGCATAGTCCGAATGAT +CAGCATCAGAGGTACTGGAATCCTGGTAGA +>C_II_XVIIIb-67/2 +CCCTTTCACCTGCCTTCAGCCATGTAACCCCATCCGACCGAGCCAACACAGGCGTAACTC +GGTTCGCCAACAATCCACTCAGAGCCCGAGGTATTAGAAAAAAATACGGGTAGAAGGGAG +ACACCTGGAGACCAGGACGAGTCACCAAAG +>C_II_XVIIIb-63/2 +CACCTCGATTTCCGCATATTCGAATAAGCAGACAACATCTGAATTCTGGGCCTCACTGAT +CCAATTTCGTGTGTTGTCATACACTATTATAGCATCATTCTTGATAGAGGTATCTTCATC +ATAAGAAACCACTGATTGGCCGATCAACTT +>C_II_XVIIIb-61/2 +GTTAGTCCTCTGACTGTCCGATAGTAGAGTTGGTAAGAACAGTCAAGGAGCACCTCGAGT +GCCGCATATTCGAAAAAGCGGTCCACATCTGAATTCTGGGCCTCACTGATCCAATTTCGT +GTGTTGTCATACACTATTATAGCATCATTC +>C_II_XVIIIb-59/2 +CCTTGTATGTATAAAAATCATTTGTTTCTAATATCTCAATCAAGAGGCGATTAGTTGAGG +TCGCCTCTTTTATCTGTTTCTTTTGGTCCTCAGAGAGGAGGTTCCGCCTGAATGAGGCGA +GCCAGTTATCTTTCGGATGTGCGATTGCCT +>C_II_XVIIIb-55/2 +ATGCAGTGGGCGGGAGGTGATTAATGCACGGGCCGTTTCCTTCTCCACTGCCATATCAGG +CCCACCTGCAGTAGCAGATTTAACTAGGTCTGAAGGCTGCTGTACCGGTTGTGAGAGTTT +ATTGAGTGTCATTTCACCCCCTTGTGTCAC +>C_II_XVIIIb-53/2 +CTCTGAGACTTTAGTGCCCAGAACGTCACAACCTAAAGGAGTTGCACTCACACTGCAGGA +CTTCCGACTTTGGGTGTCATCTAAGTTGATAGAACGCAGAGTAGAAAAGAATACCCTCCC +TGTCGCAGATACCCGAAGCACACCAAGTGC +>C_II_XVIIIb-51/2 +TTAAGGATGGTAACCTCAATTAAGTTCATGTATAATCCTAGCCCTATATCAGAGAAGGAT +TTTGCAAGACTCGACTTAGCTATCTTCAAGAGTTATGAGCTTAATTTGGAGTCATATTCC +ACACTGGAGCTGATGAACATTCTTTCAATC +>C_II_XVIIIb-47/2 +TCGCACTCAATATCTTTCGCGATGCCCGGTGTTAAACTGAATAACAACACAAGCCCAGAT +CCCGTGCTGCCGGGTAGCCACAATCTAACAACACTGACATGATTAGTCTGAGTCCTGTTT +TTGGCCACTTTAGTAAGAAAAAATAAAAAA +>C_II_XVIIIb-41/2 +GTCCTTCTCCACTGCCATATCAGGCCCACCTGCAGTAGCAGATTTAACTAGCTCTGAAGG +GTGCTGTACCGGTTGTGAGAGTTTATTGAGTGTCATTTCACCCCCTTGTGTCACATAAGG +AGATGGGTCTCCAGGGCCCGAAATTAAAAC +>C_II_XVIIIb-39/2 +AAGGCCGCGTGTCAAGGCCGCTACAATATGCGGGAAGGTCATTGGGCAGCTTCATGCCGA +TTCAGCGGAGATCTCACACGATGTCATGGTGAGAGAGTGCAAGAGTTTATCTGCCCTCGA +ATTTGAGCCATGCATAGAGTATGACCCCGT +>C_II_XVIIIb-37/2 +GATAGGTAAGGTCTGATGATTCTGCGGATCTGGTGTTAACTCAGCTGCACCAAGCTAGGG +ATAACTTCTTTAAGGAATTAATTCATGTCAATCATCTGATTGGTCATAACTTGAAAGATC +GTGAAACCATCAGGTCAGACACATTCTTCA +>C_II_XVIIIb-35/2 +CTGAGTGGTTCGTTAGCATCTTCGCTAACAGCAATCCGAAGACACAATACCGCAAAATTC +CATCTATCCTCTGGATCATCACTGTTAAGAGTAAATACTGGGACTTCAACTTTTAAAGTG +CTCCCTTTCTCTCCTCCTCCGTGAGTTCCG +>C_II_XVIIIb-31/2 +GTGCATCAATACTCGAATGAGTAAGGGTACAGCCAATGCTTTCTCCTCTGTCTCATTGTC +CTCCGTATGCACTCCGGATAATAAAGGGTTTGAACAAGTCTCAAATAAGACCTTTTGTGT +ATGCTTCTTGAGGACAATATTTGGGCTTGC +>C_II_XVIIIb-27/2 +TATAGGAATCTACAAGCGGAAGTGTAATGTAAATAAGGATTTGTCCAGGAGTTCTACCCA +TTATGGAGAGAGAATGCAGAAGAAAGCGACCTGACTTCAGATAGAGCAGTGGGATATATC +ACATCTGTAGTGCCCCACAGGTCTGTAGCA +>C_II_XVIIIb-25/2 +CAAAGACGTGGGGCATCTTATGAACTAACGTTACTAGCTTGGCGACTGCGGATCTTGTTC +TTGCTGCTACAATCAGATGCCTTTGGACCTGTTTTATATGGAGCCATGCAAACTTGGCTC +TGGACCACTTTGAGGGAAACCAGAATGCCG +>C_II_XVIIIb-23/2 +ATGACCAGCATTATATCCGAGGGCTAGGCCGAGAACTCATAGTAAACGACACCAGTGATG +TCACATCATTTTATCCTTCCGCATATCAAGAACACTTGAATTTTATCCCGGCGCCTTCTA +CAGGGTCTGGTTGCACTCGGATACCCTCAT +>C_II_XVIIIb-21/2 +CACAAGCAAAACAAAACACATCACTAGGGCTCGGAAACAATACCCTTGATCAGATGAGGG +CCAATACAAGAGCATGACCTCAAATGAGAATTGGATGCACGTACAGCAGCAGCCTGTATG +TCAATTCTGACAGCCTGTCAGATCGAAAAC +>C_II_XVIIIb-15/2 +AACTGGCGCCCCACATCCACTAGTATTCACAGACCCGTTGATTTGATAAGAGAGGGATGT +TATTGCATTCATAATTATAGATTCGGTGTTTAGTAGCGCTAGCGGAGATTCAAGAGCCAC +CTGTTTATATATCCTATCTGTCACATCTTG +>C_II_XVIIIb-13/2 +TGACCTCCAGGATCTGTAGTGTGCACTGTTTAAGTGATGTTCTCTTTTTCCCGTCTGTAG +AGAGGTTATAAGGAGTAAATAAGAATACTGTGTCAGCAAGGTCCCCCTCGGCATCCATGT +AGATCACAGATCTAATGACTGTGTCAATGT +>C_II_XVIIIb-11/2 +CACCTCATGCCATCGTCGTGTCACGGAAATCCTATCTAGTCCCCTACCGAGGCTGATGAA +GTTCTTGGGAGAAAATATTGATGCTGCACTGATCGCAGCAGGGGGACAGCCCGTCCGTCC +CTTTTGTGCAGAAAGTTTGGTGAGCACACT +>C_II_XVIIIb-7/2 +CTCATGAACCGTTGCTTGAGCTTCATCCAGTACAAGACATCGGTGCTCGGGTGAAAGACC +CGTTAACCCGACAACCTGCATCATTTATACAAGAGCTAGATTTGAGTGCTCCAGCAAGGT +ATGATGCATTTACGCTTAGCGAGATTTGCC +>HQ630064-957/2 +CTGATCCAGTGGCCCTTCGTTACTCACGAAGTATCTGTGCATTTATACGTGACGCCACGC +TAACAAGGAAGCGCCGCGCAATTTGCTCACGGTTGGGCGTAGCTCTGTGCTCGAGCGCAC +GCGAAAAATTCTCGTCTCATTTCCCCTTAC +>HQ630064-665/2 +TCGAATAGGCCGTGGTTTGCGGCCGTACTCGTAGAAGCACAAAATATCGCCCTACTCGTG +TGTCAAAAAGGAAAAGTCTTAATGGGCTGTGAAGTGATCTGGAGATCAAAGCGGCACTCT +CTTTGAGAAGTCTCTTCTCGAGACTCTCTC +>HQ630064-403/2 +TACGGTGGGGGTCACAACAATTTAACCAATGAAATGTTTCTTTATTATAAGAGCGGTATA +GCAGATTTAATAAAATACCTTTTTTGAAAAAATATTGACCTGTCTCGCGTTGTAGATTCT +TCGCATCCGCGTTCCGTCATAATTCCAAGA +>HQ630064-343/2 +CTCCCGTGCATGTATACGTGACGCCACGCTAACAAGGAAGCGCCGCGCAATTTGCTCACG +GTTGGGCGTAGCTCTGTCCTCGAGCGCACGTGAAAAATTCTCGTCTCATTTCCCCTTACC +ACACCACACCAAACACTGGTAGTAAAACCG +>HQ630064-307/2 +TTTTTCACAGACGGGGACGTTCTCATCTAACTTCGGGGATCCTGGGGATATATTTTATAG +CGATGTAGTAGGGGGAGATGGCCCAATATTCGAAGATCCAGAGGACATTTGTACCCGTAG +ACCGGAATATGGAGAAAAGCTAAAAGAACA +>HQ630064-241/2 +CATAATCATTTACAAAACGCGGGACCTCGACAATATGCGGGAAAATCTAACAGCAATCTA +TCTTGGAGAATACGCTCTTCCGAAAGACCGTGGGAAAAAATTAGAAAATTTACCCACGGA +CCCAAGTCCCGCTTTGCCATTTTAGGAAAA +>HQ630064-217/2 +AAATCGCATGTCACACCCCAGCGTCGGAAAAACCGCCCGAGACGAAGTTGCTTCTTCTTT +GGGGCCCCCTCTTTTTTAAGCTACAAAATTTGCTTTGAGGCCTTTTCCTTTCTTTCTTTC +TTTCGCGTGTGATTGACGGGGGTTTACGTG +>HQ630064-199/2 +CCGTTAGCACTTAAGTAACCGGAGCTTGGCAACACCAAGGCCTCATCCCAACATCCAAAG +CACTCGAGCAAACGCAGGAGTAGCAAATCTCGCTATTTCAAAGCTTCAGAATCGTGTAAT +ACACCGTCACGCTTGCTATCTTTCTCATCT +>HQ630064-111/2 +GAAACTTGAATAAGAGCTCCCCAACTACGCTGCTAGAACTAGCAAATTTTATGCTCGCCA +ACAAGGTGTTGGAGTTCTGCGACCACGGAGAGATGGCCGGCAGAGCACAATATTATATAA +GTACTCCATCGATGATCATTACGACCTCCA +>HQ630064-105/2 +TTATTAAATTGTTATTTCCACCACCGCAGAGCAATACCGTGATGTTCTTTACGCCCTCTT +CTCCGGTCGTTGTGTTGTCCATACATCTCGTCTTCCCTCAGCGCTGCCCGCAAATGGTTC +AACGTATGTCGGTTGGTTGACTATGTCCTA +>HQ630064-11/2 +TGGGCGTAGTTCTGTCCTCGAGCGCACGCGAAAAATTCTCGTCTCATTTCCCCTTACCAC +ACCACACCAAACACTGGTAGTAAAATCGCATAATGCACCCCAACGTCGGAAACACAGCCC +GAGACGATGTTGCTTCTTCTTTAGGGCCCC +>HQ630064-3/2 +CCACAGTTATTTGCAATAGGACTCGAGTGAGTTTTAAGAAGAGACTTCTCAAAGAGAGAG +CCGCTTTGATCTCCAGATCACTTCACAGCCCATTAAGACTTTTCCTTTTTGACACACGAG +TAGGGCGATATTTTGTGCTTATCCGAGAAC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/read1.fastq Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,16 @@ +@SRR5680996.16159603/1 +TGGGTCAAGCCTTGGACCCCAAACTCTTCGAAACTGACGGTCGTGGTTGCC ++ +@CCFDFFFHHHHHJJIJJJJJJJJJJJIJJJJIJIIGIIIIIIGIIGHIJJ +@SRR5680996.2860859/1 +GACTGCTGGCTTTTGTGGACTCTGGATTCCAGGCTTTGCAACCCTAGCGGC ++ +@<@DDDFFHHFFFHEFHIIGIIIIIEIIIIGHIHGGIIIIIIIGEIIIIII +@SRR5680996.18976829/1 +TAGAGAACAGGGCCCACCAGTCGTACTGGCTCCCCCAAAGGTCCCGACTGT ++ +CCCFFFFFHHHHHJJJJJJJIJJJIJJJJJIJJJJJEHJGIDGIJIJJIJC +@SRR5680996.16094632/1 +GCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACCAGTAAAC ++ +CCCFFFFFHHHHGJJJJJJJJJJJHHHIJJHHIJJJJJJJJIIGHIHJJJJ \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/read2.fastq Wed Mar 15 18:17:25 2023 +0000 @@ -0,0 +1,16 @@ +@SRR5680996.16159603/2 +CAATCTCTGGATAGATCTTGGGGGGTGCTGATGGGCTGGACTTTCCGGCTG ++ +CCCFFFFFHHFHFIIIJJJIJIIJD<BDDDDDDDDDDDDDDDDDDDDDDDD +@SRR5680996.2860859/2 +CTTTCAGACATGTGGGCCATCCACTAGCAACAGGATCTAATTTTTTTGACA ++ +;==D??:B:D??AE<<1;AA<ACF+CEGC@@E?8D3?FDG><F>BF:FFE= +@SRR5680996.18976829/2 +AGACTGACCAGACAGTCCTCTGTTCCTAGGGGCGGTAGGGAAGCCGAGGTA ++ +CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJJJJ@EHHHHFFFFDCDD;@ +@SRR5680996.16094632/2 +ACTGGATGGTTTTAGGTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTG ++ +@CCFFDFFHDFHHIJJIJJJJJIIJJJJJIIJJJGFIIIJHIHIJDGFHFD \ No newline at end of file