Mercurial > repos > iuc > krakentools_beta_diversity

changeset 2:214ece7f1216 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit afc6220b1e5f402f872338bbab440e4a1fe04ccd
author iuc
date Mon, 06 Mar 2023 21:22:58 +0000
parents 4b32f3b4a851
children b33f117e9b67
files test-data/mpa_output.tabular test-data/mpa_output_intermediate.tabular test-data/mpa_output_percentages.tabular
diffstat 3 files changed, 728 insertions(+), 0 deletions(-) [+]
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mpa_output.tabular	Mon Mar 06 21:22:58 2023 +0000
@@ -0,0 +1,215 @@
+k__Eukaryota	756
+k__Eukaryota|k__Metazoa	402
+k__Eukaryota|k__Metazoa|p__Chordata	402
+k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia	402
+k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates	402
+k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae	402
+k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo	402
+k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo|s__Homo_sapiens	402
+k__Eukaryota|k__Fungi	342
+k__Eukaryota|k__Fungi|p__Ascomycota	341
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes	336
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales	336
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae	333
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces	329
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae	293
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_paradoxus	15
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_eubayanus	10
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces|s__Kluyveromyces_marxianus	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella|s__Sugiyamaella_lignohabitans	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida|s__Candida_dubliniensis	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes	3
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora|s__Neurospora_crassa	1
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+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia|s__Pyricularia_pennisetigena	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus|s__Aspergillus_luchuensis	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces	1
+k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales|f__Schizosaccharomycetaceae|g__Schizosaccharomyces|s__Schizosaccharomyces_pombe	1
+k__Eukaryota|p__Apicomplexa	5
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+k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium	4
+k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_vivax	1
+k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_malariae	1
+k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_coatneyi	1
+k__Eukaryota|p__Apicomplexa|c__Aconoidasida|o__Haemosporida|f__Plasmodiidae|g__Plasmodium|s__Plasmodium_chabaudi	1
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+k__Eukaryota|p__Evosea	1
+k__Eukaryota|p__Evosea|c__Eumycetozoa	1
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+k__Bacteria	51
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+k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales	9
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+k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium	4
+k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium_sp._MF28	1
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+k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga	1
+k__Bacteria|p__Bacteroidetes|c__Cytophagia|o__Cytophagales|f__Flammeovirgaceae|g__Flammeovirga|s__Flammeovirga_kamogawensis	1
+k__Bacteria|p__Fusobacteria	2
+k__Bacteria|p__Fusobacteria|c__Fusobacteriia	2
+k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales	2
+k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae	2
+k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	2
+k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_nucleatum	1
+k__Bacteria|p__Fusobacteria|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium|s__Fusobacterium_hwasookii	1
+k__Bacteria|p__Spirochaetes	1
+k__Bacteria|p__Spirochaetes|c__Spirochaetia	1
+k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales	1
+k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae	1
+k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira	1
+k__Bacteria|p__Spirochaetes|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira_hyodysenteriae	1
+k__Archaea	2
+k__Archaea|p__Euryarchaeota	1
+k__Archaea|p__Euryarchaeota|c__Methanomicrobia	1
+k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales	1
+k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae	1
+k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina	1
+k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri	1
+k__Archaea|p__Thaumarchaeota	1
+k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria	1
+k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales	1
+k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae	1
+k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus	1
+k__Archaea|p__Thaumarchaeota|c__Nitrososphaeria|o__Nitrososphaerales|f__Nitrososphaeraceae|g__Candidatus_Nitrosocosmicus|s__Candidatus_Nitrosocosmicus_franklandus	1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mpa_output_intermediate.tabular	Mon Mar 06 21:22:58 2023 +0000
@@ -0,0 +1,298 @@
+x__cellular_organisms	836
+x__cellular_organisms|k__Eukaryota	756
+x__cellular_organisms|k__Eukaryota|x__Opisthokonta	747
+x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa	402
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+x__cellular_organisms|k__Eukaryota|x__Opisthokonta|k__Metazoa|x__Eumetazoa|x__Bilateria|x__Deuterostomia|p__Chordata|x__Craniata	402
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mpa_output_percentages.tabular	Mon Mar 06 21:22:58 2023 +0000
@@ -0,0 +1,215 @@
+k__Eukaryota	56.0
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