Mercurial > repos > iuc > krakentools_extract_kraken_reads
comparison test-data/sample.tabular @ 0:519e0835abd7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit 92c58a65005708fbd56b27b86969c01a1258ddb9
| author | iuc |
|---|---|
| date | Wed, 15 Mar 2023 18:18:27 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:519e0835abd7 |
|---|---|
| 1 38.00 513 513 U 0 unclassified | |
| 2 62.00 837 1 R 1 root | |
| 3 61.93 836 27 R1 131567 cellular organisms | |
| 4 56.00 756 3 D 2759 Eukaryota | |
| 5 55.33 747 3 D1 33154 Opisthokonta | |
| 6 29.78 402 0 K 33208 Metazoa | |
| 7 29.78 402 0 K1 6072 Eumetazoa | |
| 8 29.78 402 0 K2 33213 Bilateria | |
| 9 29.78 402 0 K3 33511 Deuterostomia | |
| 10 29.78 402 0 P 7711 Chordata | |
| 11 29.78 402 0 P1 89593 Craniata | |
| 12 29.78 402 0 P2 7742 Vertebrata | |
| 13 29.78 402 0 P3 7776 Gnathostomata | |
| 14 29.78 402 0 P4 117570 Teleostomi | |
| 15 29.78 402 0 P5 117571 Euteleostomi | |
| 16 29.78 402 0 P6 8287 Sarcopterygii | |
| 17 29.78 402 0 P7 1338369 Dipnotetrapodomorpha | |
| 18 29.78 402 0 P8 32523 Tetrapoda | |
| 19 29.78 402 0 P9 32524 Amniota | |
| 20 29.78 402 0 C 40674 Mammalia | |
| 21 29.78 402 0 C1 32525 Theria | |
| 22 29.78 402 0 C2 9347 Eutheria | |
| 23 29.78 402 0 C3 1437010 Boreoeutheria | |
| 24 29.78 402 0 C4 314146 Euarchontoglires | |
| 25 29.78 402 0 O 9443 Primates | |
| 26 29.78 402 0 O1 376913 Haplorrhini | |
| 27 29.78 402 0 O2 314293 Simiiformes | |
| 28 29.78 402 0 O3 9526 Catarrhini | |
| 29 29.78 402 0 O4 314295 Hominoidea | |
| 30 29.78 402 0 F 9604 Hominidae | |
| 31 29.78 402 0 F1 207598 Homininae | |
| 32 29.78 402 0 G 9605 Homo | |
| 33 29.78 402 402 S 9606 Homo sapiens | |
| 34 25.33 342 0 K 4751 Fungi | |
| 35 25.33 342 1 K1 451864 Dikarya | |
| 36 25.26 341 0 P 4890 Ascomycota | |
| 37 25.19 340 0 P1 716545 saccharomyceta | |
| 38 24.89 336 0 P2 147537 Saccharomycotina | |
| 39 24.89 336 0 C 4891 Saccharomycetes | |
| 40 24.89 336 1 O 4892 Saccharomycetales | |
| 41 24.67 333 3 F 4893 Saccharomycetaceae | |
| 42 24.37 329 11 G 4930 Saccharomyces | |
| 43 21.70 293 0 S 4932 Saccharomyces cerevisiae | |
| 44 21.70 293 293 S1 559292 Saccharomyces cerevisiae S288C | |
| 45 1.11 15 15 S 27291 Saccharomyces paradoxus | |
| 46 0.74 10 10 S 1080349 Saccharomyces eubayanus | |
| 47 0.07 1 0 G 4910 Kluyveromyces | |
| 48 0.07 1 0 S 4911 Kluyveromyces marxianus | |
| 49 0.07 1 1 S1 1003335 Kluyveromyces marxianus DMKU3-1042 | |
| 50 0.07 1 0 F 410830 Trichomonascaceae | |
| 51 0.07 1 0 G 410829 Sugiyamaella | |
| 52 0.07 1 1 S 796027 Sugiyamaella lignohabitans | |
| 53 0.07 1 0 O1 2916678 CUG-Ser1 clade | |
| 54 0.07 1 0 F 766764 Debaryomycetaceae | |
| 55 0.07 1 0 F1 1535325 Candida/Lodderomyces clade | |
| 56 0.07 1 0 G 1535326 Candida | |
| 57 0.07 1 0 S 42374 Candida dubliniensis | |
| 58 0.07 1 1 S1 573826 Candida dubliniensis CD36 | |
| 59 0.30 4 0 P2 147538 Pezizomycotina | |
| 60 0.30 4 0 P3 716546 leotiomyceta | |
| 61 0.22 3 0 P4 715989 sordariomyceta | |
| 62 0.22 3 0 C 147550 Sordariomycetes | |
| 63 0.15 2 0 C1 222544 Sordariomycetidae | |
| 64 0.07 1 0 O 5139 Sordariales | |
| 65 0.07 1 0 F 5148 Sordariaceae | |
| 66 0.07 1 0 G 5140 Neurospora | |
| 67 0.07 1 0 S 5141 Neurospora crassa | |
| 68 0.07 1 1 S1 367110 Neurospora crassa OR74A | |
| 69 0.07 1 0 O 639021 Magnaporthales | |
| 70 0.07 1 0 F 2528436 Pyriculariaceae | |
| 71 0.07 1 0 G 48558 Pyricularia | |
| 72 0.07 1 1 S 1578925 Pyricularia pennisetigena | |
| 73 0.07 1 1 C1 222543 Hypocreomycetidae | |
| 74 0.07 1 0 C 147545 Eurotiomycetes | |
| 75 0.07 1 0 C1 451871 Eurotiomycetidae | |
| 76 0.07 1 0 O 5042 Eurotiales | |
| 77 0.07 1 0 F 1131492 Aspergillaceae | |
| 78 0.07 1 0 G 5052 Aspergillus | |
| 79 0.07 1 1 S 1069201 Aspergillus luchuensis | |
| 80 0.07 1 0 P1 451866 Taphrinomycotina | |
| 81 0.07 1 0 C 147554 Schizosaccharomycetes | |
| 82 0.07 1 0 O 34346 Schizosaccharomycetales | |
| 83 0.07 1 0 F 4894 Schizosaccharomycetaceae | |
| 84 0.07 1 0 G 4895 Schizosaccharomyces | |
| 85 0.07 1 1 S 4896 Schizosaccharomyces pombe | |
| 86 0.37 5 0 D1 2698737 Sar | |
| 87 0.37 5 0 D2 33630 Alveolata | |
| 88 0.37 5 0 P 5794 Apicomplexa | |
| 89 0.30 4 0 C 422676 Aconoidasida | |
| 90 0.30 4 0 O 5819 Haemosporida | |
| 91 0.30 4 0 F 1639119 Plasmodiidae | |
| 92 0.30 4 0 G 5820 Plasmodium | |
| 93 0.15 2 0 G1 418103 Plasmodium (Plasmodium) | |
| 94 0.07 1 1 S 5855 Plasmodium vivax | |
| 95 0.07 1 1 S 5858 Plasmodium malariae | |
| 96 0.07 1 1 S 208452 Plasmodium coatneyi | |
| 97 0.07 1 0 G1 418101 Plasmodium (Vinckeia) | |
| 98 0.07 1 0 S 5825 Plasmodium chabaudi | |
| 99 0.07 1 1 S1 31271 Plasmodium chabaudi chabaudi | |
| 100 0.07 1 0 C 1280412 Conoidasida | |
| 101 0.07 1 0 C1 5796 Coccidia | |
| 102 0.07 1 0 O 75739 Eucoccidiorida | |
| 103 0.07 1 0 O1 423054 Eimeriorina | |
| 104 0.07 1 0 F 35082 Cryptosporidiidae | |
| 105 0.07 1 0 G 5806 Cryptosporidium | |
| 106 0.07 1 0 S 5807 Cryptosporidium parvum | |
| 107 0.07 1 1 S1 353152 Cryptosporidium parvum Iowa II | |
| 108 0.07 1 0 D1 554915 Amoebozoa | |
| 109 0.07 1 0 P 2605435 Evosea | |
| 110 0.07 1 0 C 142796 Eumycetozoa | |
| 111 0.07 1 0 C1 33083 Dictyostelia | |
| 112 0.07 1 0 O 2058949 Dictyosteliales | |
| 113 0.07 1 0 F 2058185 Dictyosteliaceae | |
| 114 0.07 1 0 G 5782 Dictyostelium | |
| 115 0.07 1 0 S 44689 Dictyostelium discoideum | |
| 116 0.07 1 1 S1 352472 Dictyostelium discoideum AX4 | |
| 117 3.78 51 1 D 2 Bacteria | |
| 118 1.63 22 2 D1 1783272 Terrabacteria group | |
| 119 1.26 17 0 P 1239 Firmicutes | |
| 120 0.67 9 0 C 186801 Clostridia | |
| 121 0.67 9 0 O 186802 Eubacteriales | |
| 122 0.30 4 0 F 31979 Clostridiaceae | |
| 123 0.30 4 1 G 1485 Clostridium | |
| 124 0.07 1 0 G1 2614128 unclassified Clostridium | |
| 125 0.07 1 1 S 1702238 Clostridium sp. MF28 | |
| 126 0.07 1 0 S 1501 Clostridium pasteurianum | |
| 127 0.07 1 1 S1 86416 Clostridium pasteurianum BC1 | |
| 128 0.07 1 0 S 217159 Clostridium carboxidivorans | |
| 129 0.07 1 1 S1 536227 Clostridium carboxidivorans P7 | |
| 130 0.15 2 0 F 186804 Peptostreptococcaceae | |
| 131 0.15 2 0 G 1870884 Clostridioides | |
| 132 0.07 1 1 S 1496 Clostridioides difficile | |
| 133 0.07 1 1 G1 2635829 unclassified Clostridioides | |
| 134 0.07 1 0 F 186803 Lachnospiraceae | |
| 135 0.07 1 0 G 1506553 Lachnoclostridium | |
| 136 0.07 1 1 S 89153 [Clostridium] hylemonae | |
| 137 0.07 1 0 F 216572 Oscillospiraceae | |
| 138 0.07 1 0 G 2039302 Monoglobus | |
| 139 0.07 1 1 S 1981510 Monoglobus pectinilyticus | |
| 140 0.07 1 0 O1 538999 Eubacteriales incertae sedis | |
| 141 0.07 1 0 F 543314 Eubacteriales Family XIII. Incertae Sedis | |
| 142 0.07 1 0 G 86331 Mogibacterium | |
| 143 0.07 1 1 S 86332 Mogibacterium pumilum | |
| 144 0.59 8 0 C 91061 Bacilli | |
| 145 0.44 6 0 O 1385 Bacillales | |
| 146 0.22 3 0 F 186817 Bacillaceae | |
| 147 0.15 2 0 G 1386 Bacillus | |
| 148 0.15 2 2 G1 86661 Bacillus cereus group | |
| 149 0.07 1 0 G 45667 Halobacillus | |
| 150 0.07 1 1 S 45668 Halobacillus litoralis | |
| 151 0.15 2 0 F 90964 Staphylococcaceae | |
| 152 0.07 1 0 G 1279 Staphylococcus | |
| 153 0.07 1 1 S 33028 Staphylococcus saccharolyticus | |
| 154 0.07 1 0 G 227979 Jeotgalicoccus | |
| 155 0.07 1 1 S 1461582 Jeotgalicoccus saudimassiliensis | |
| 156 0.07 1 0 F 186822 Paenibacillaceae | |
| 157 0.07 1 0 G 44249 Paenibacillus | |
| 158 0.07 1 1 S 116718 Paenibacillus azoreducens | |
| 159 0.15 2 0 O 186826 Lactobacillales | |
| 160 0.07 1 0 F 1300 Streptococcaceae | |
| 161 0.07 1 0 G 1357 Lactococcus | |
| 162 0.07 1 0 S 1358 Lactococcus lactis | |
| 163 0.07 1 0 S1 1360 Lactococcus lactis subsp. lactis | |
| 164 0.07 1 1 S2 889971 Lactococcus lactis subsp. lactis K214 | |
| 165 0.07 1 0 F 33958 Lactobacillaceae | |
| 166 0.07 1 0 G 46255 Weissella | |
| 167 0.07 1 1 S 1249 Weissella paramesenteroides | |
| 168 0.15 2 0 P 544448 Tenericutes | |
| 169 0.07 1 0 C 31969 Mollicutes | |
| 170 0.07 1 0 O 2085 Mycoplasmatales | |
| 171 0.07 1 0 F 2092 Mycoplasmataceae | |
| 172 0.07 1 0 G 2093 Mycoplasma | |
| 173 0.07 1 0 G1 2683645 unclassified Mycoplasma | |
| 174 0.07 1 1 S 353851 Mycoplasma sp. Ms02 | |
| 175 0.07 1 0 O 2790996 Mycoplasmoidales | |
| 176 0.07 1 0 F 2895623 Metamycoplasmataceae | |
| 177 0.07 1 0 G 2895509 Metamycoplasma | |
| 178 0.07 1 1 S 142649 Metamycoplasma phocicerebrale | |
| 179 0.07 1 0 D2 1798711 Cyanobacteria/Melainabacteria group | |
| 180 0.07 1 0 P 1117 Cyanobacteria | |
| 181 0.07 1 0 P1 1301283 Oscillatoriophycideae | |
| 182 0.07 1 0 O 1118 Chroococcales | |
| 183 0.07 1 0 F 1890464 Chroococcaceae | |
| 184 0.07 1 0 G 268175 Chondrocystis | |
| 185 0.07 1 0 G1 2648896 unclassified Chondrocystis | |
| 186 0.07 1 1 S 2005460 Chondrocystis sp. NIES-4102 | |
| 187 1.33 18 0 P 1224 Proteobacteria | |
| 188 1.04 14 0 C 1236 Gammaproteobacteria | |
| 189 0.44 6 0 O 91347 Enterobacterales | |
| 190 0.15 2 0 F 543 Enterobacteriaceae | |
| 191 0.07 1 0 G 561 Escherichia | |
| 192 0.07 1 0 S 562 Escherichia coli | |
| 193 0.07 1 0 S1 83333 Escherichia coli K-12 | |
| 194 0.07 1 1 S2 595496 Escherichia coli BW2952 | |
| 195 0.07 1 0 G 544 Citrobacter | |
| 196 0.07 1 0 G1 2644389 unclassified Citrobacter | |
| 197 0.07 1 1 S 2742657 Citrobacter sp. RHBSTW-00599 | |
| 198 0.15 2 0 F 1903409 Erwiniaceae | |
| 199 0.07 1 0 G 551 Erwinia | |
| 200 0.07 1 1 S 1922217 Candidatus Erwinia haradaeae | |
| 201 0.07 1 0 G 32199 Buchnera | |
| 202 0.07 1 0 S 9 Buchnera aphidicola | |
| 203 0.07 1 0 S1 118117 Buchnera aphidicola (Uroleucon ambrosiae) | |
| 204 0.07 1 1 S2 1005057 Buchnera aphidicola str. Ua (Uroleucon ambrosiae) | |
| 205 0.07 1 0 F 1903411 Yersiniaceae | |
| 206 0.07 1 0 G 34037 Rahnella | |
| 207 0.07 1 0 S 34038 Rahnella aquatilis | |
| 208 0.07 1 1 S1 745277 Rahnella aquatilis CIP 78.65 = ATCC 33071 | |
| 209 0.07 1 0 F 1903414 Morganellaceae | |
| 210 0.07 1 0 G 29487 Photorhabdus | |
| 211 0.07 1 1 S 291112 Photorhabdus asymbiotica | |
| 212 0.37 5 0 O 72273 Thiotrichales | |
| 213 0.37 5 0 F 34064 Francisellaceae | |
| 214 0.37 5 0 G 262 Francisella | |
| 215 0.37 5 5 S 549298 Francisella halioticida | |
| 216 0.07 1 0 C1 118884 Gammaproteobacteria incertae sedis | |
| 217 0.07 1 0 G 204619 Candidatus Nardonella | |
| 218 0.07 1 1 S 1972134 endosymbiont of Sipalinus gigas | |
| 219 0.07 1 0 O 135623 Vibrionales | |
| 220 0.07 1 0 F 641 Vibrionaceae | |
| 221 0.07 1 0 G 662 Vibrio | |
| 222 0.07 1 0 G1 717610 Vibrio harveyi group | |
| 223 0.07 1 1 S 512649 Vibrio azureus | |
| 224 0.07 1 0 O 135625 Pasteurellales | |
| 225 0.07 1 0 F 712 Pasteurellaceae | |
| 226 0.07 1 0 G 416916 Aggregatibacter | |
| 227 0.07 1 0 G1 2639383 unclassified Aggregatibacter | |
| 228 0.07 1 1 S 712150 Aggregatibacter sp. oral taxon 513 | |
| 229 0.15 2 0 C 28216 Betaproteobacteria | |
| 230 0.07 1 0 O 80840 Burkholderiales | |
| 231 0.07 1 0 F 119060 Burkholderiaceae | |
| 232 0.07 1 0 G 106589 Cupriavidus | |
| 233 0.07 1 1 S 68895 Cupriavidus basilensis | |
| 234 0.07 1 0 C1 119066 Betaproteobacteria incertae sedis | |
| 235 0.07 1 0 G 33055 Candidatus Kinetoplastibacterium | |
| 236 0.07 1 1 S 33056 Candidatus Kinetoplastibacterium crithidii | |
| 237 0.15 2 0 P1 68525 delta/epsilon subdivisions | |
| 238 0.15 2 0 C 29547 Epsilonproteobacteria | |
| 239 0.15 2 0 O 213849 Campylobacterales | |
| 240 0.15 2 0 F 72294 Campylobacteraceae | |
| 241 0.15 2 0 G 194 Campylobacter | |
| 242 0.15 2 2 S 1813019 Campylobacter hepaticus | |
| 243 0.52 7 0 D1 1783270 FCB group | |
| 244 0.52 7 0 D2 68336 Bacteroidetes/Chlorobi group | |
| 245 0.52 7 0 P 976 Bacteroidetes | |
| 246 0.22 3 0 C 117743 Flavobacteriia | |
| 247 0.22 3 0 O 200644 Flavobacteriales | |
| 248 0.07 1 0 F 39782 Blattabacteriaceae | |
| 249 0.07 1 0 G 34098 Blattabacterium | |
| 250 0.07 1 1 S 1653831 Blattabacterium cuenoti | |
| 251 0.07 1 0 F 49546 Flavobacteriaceae | |
| 252 0.07 1 0 G 336276 Olleya | |
| 253 0.07 1 1 G1 2615019 unclassified Olleya | |
| 254 0.07 1 0 F 2762318 Weeksellaceae | |
| 255 0.07 1 0 F1 2782232 Chryseobacterium group | |
| 256 0.07 1 0 G 59732 Chryseobacterium | |
| 257 0.07 1 0 G1 2593645 unclassified Chryseobacterium | |
| 258 0.07 1 1 S 2759528 Chryseobacterium sp. DH-B6 | |
| 259 0.15 2 0 C 200643 Bacteroidia | |
| 260 0.15 2 2 O 171549 Bacteroidales | |
| 261 0.07 1 0 C 117747 Sphingobacteriia | |
| 262 0.07 1 0 O 200666 Sphingobacteriales | |
| 263 0.07 1 0 F 84566 Sphingobacteriaceae | |
| 264 0.07 1 0 G 28453 Sphingobacterium | |
| 265 0.07 1 1 S 28454 Sphingobacterium multivorum | |
| 266 0.07 1 0 C 768503 Cytophagia | |
| 267 0.07 1 0 O 768507 Cytophagales | |
| 268 0.07 1 0 F 200667 Flammeovirgaceae | |
| 269 0.07 1 0 G 59739 Flammeovirga | |
| 270 0.07 1 1 S 373891 Flammeovirga kamogawensis | |
| 271 0.15 2 0 P 32066 Fusobacteria | |
| 272 0.15 2 0 C 203490 Fusobacteriia | |
| 273 0.15 2 0 O 203491 Fusobacteriales | |
| 274 0.15 2 0 F 203492 Fusobacteriaceae | |
| 275 0.15 2 0 G 848 Fusobacterium | |
| 276 0.07 1 0 S 851 Fusobacterium nucleatum | |
| 277 0.07 1 1 S1 76857 Fusobacterium nucleatum subsp. polymorphum | |
| 278 0.07 1 1 S 1583098 Fusobacterium hwasookii | |
| 279 0.07 1 0 P 203691 Spirochaetes | |
| 280 0.07 1 0 C 203692 Spirochaetia | |
| 281 0.07 1 0 O 1643686 Brachyspirales | |
| 282 0.07 1 0 F 143786 Brachyspiraceae | |
| 283 0.07 1 0 G 29521 Brachyspira | |
| 284 0.07 1 1 S 159 Brachyspira hyodysenteriae | |
| 285 0.15 2 0 D 2157 Archaea | |
| 286 0.07 1 0 P 28890 Euryarchaeota | |
| 287 0.07 1 0 P1 2290931 Stenosarchaea group | |
| 288 0.07 1 0 C 224756 Methanomicrobia | |
| 289 0.07 1 0 O 94695 Methanosarcinales | |
| 290 0.07 1 0 F 2206 Methanosarcinaceae | |
| 291 0.07 1 0 G 2207 Methanosarcina | |
| 292 0.07 1 0 S 2208 Methanosarcina barkeri | |
| 293 0.07 1 1 S1 1434107 Methanosarcina barkeri 3 | |
| 294 0.07 1 0 D1 1783275 TACK group | |
| 295 0.07 1 0 P 651137 Thaumarchaeota | |
| 296 0.07 1 0 C 1643678 Nitrososphaeria | |
| 297 0.07 1 0 O 1033996 Nitrososphaerales | |
| 298 0.07 1 0 F 1033997 Nitrososphaeraceae | |
| 299 0.07 1 0 G 1826864 Candidatus Nitrosocosmicus | |
| 300 0.07 1 1 S 1798806 Candidatus Nitrosocosmicus franklandus |