view test-data/output_intermediate.tabular @ 0:519e0835abd7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit 92c58a65005708fbd56b27b86969c01a1258ddb9
author iuc
date Wed, 15 Mar 2023 18:18:27 +0000
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0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata
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1	x__root	x__cellular_organisms	k__Bacteria
2	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Clostridia
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Clostridia	o__Eubacteriales
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Clostridia	o__Eubacteriales	f__Clostridiaceae
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Clostridia	o__Eubacteriales	f__Oscillospiraceae	g__Monoglobus
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Clostridia	o__Eubacteriales	x__Eubacteriales_incertae_sedis
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Bacillaceae
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Bacillaceae	g__Bacillus
2	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Bacillaceae	g__Bacillus	x__Bacillus_cereus_group
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1	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Bacillaceae	g__Halobacillus	s__Halobacillus_litoralis
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Staphylococcaceae
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Staphylococcaceae	g__Staphylococcus
1	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Bacillales	f__Staphylococcaceae	g__Staphylococcus	s__Staphylococcus_saccharolyticus
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Lactobacillaceae	g__Weissella
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Tenericutes
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Tenericutes	c__Mollicutes
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Tenericutes	c__Mollicutes	o__Mycoplasmatales
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Tenericutes	c__Mollicutes	o__Mycoplasmatales	f__Mycoplasmataceae	g__Mycoplasma
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Tenericutes	o__Mycoplasmoidales	f__Metamycoplasmataceae
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	p__Tenericutes	o__Mycoplasmoidales	f__Metamycoplasmataceae	g__Metamycoplasma
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0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	x__Cyanobacteria/Melainabacteria_group
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	x__Cyanobacteria/Melainabacteria_group	p__Cyanobacteria
0	x__root	x__cellular_organisms	k__Bacteria	x__Terrabacteria_group	x__Cyanobacteria/Melainabacteria_group	p__Cyanobacteria	x__Oscillatoriophycideae
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0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Enterobacteriaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Enterobacteriaceae	g__Escherichia
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Enterobacteriaceae	g__Escherichia	s__Escherichia_coli
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Enterobacteriaceae	g__Escherichia	s__Escherichia_coli	x__Escherichia_coli_K-12
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0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Enterobacteriaceae	g__Citrobacter	x__unclassified_Citrobacter
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0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Erwiniaceae	g__Buchnera
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Erwiniaceae	g__Buchnera	s__Buchnera_aphidicola
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Erwiniaceae	g__Buchnera	s__Buchnera_aphidicola	x__Buchnera_aphidicola_(Uroleucon_ambrosiae)
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0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Yersiniaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Yersiniaceae	g__Rahnella
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Yersiniaceae	g__Rahnella	s__Rahnella_aquatilis
1	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Yersiniaceae	g__Rahnella	s__Rahnella_aquatilis	x__Rahnella_aquatilis_CIP_78.65_=_ATCC_33071
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Morganellaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Morganellaceae	g__Photorhabdus
1	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Enterobacterales	f__Morganellaceae	g__Photorhabdus	s__Photorhabdus_asymbiotica
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Thiotrichales
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Thiotrichales	f__Francisellaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Thiotrichales	f__Francisellaceae	g__Francisella
5	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Thiotrichales	f__Francisellaceae	g__Francisella	s__Francisella_halioticida
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	x__Gammaproteobacteria_incertae_sedis
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	x__Gammaproteobacteria_incertae_sedis	g__Candidatus_Nardonella
1	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	x__Gammaproteobacteria_incertae_sedis	g__Candidatus_Nardonella	s__endosymbiont_of_Sipalinus_gigas
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Vibrionales
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Vibrionales	f__Vibrionaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Vibrionales	f__Vibrionaceae	g__Vibrio
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Vibrionales	f__Vibrionaceae	g__Vibrio	x__Vibrio_harveyi_group
1	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Vibrionales	f__Vibrionaceae	g__Vibrio	x__Vibrio_harveyi_group	s__Vibrio_azureus
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Aggregatibacter
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Aggregatibacter	x__unclassified_Aggregatibacter
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0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria	o__Burkholderiales
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria	o__Burkholderiales	f__Burkholderiaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria	o__Burkholderiales	f__Burkholderiaceae	g__Cupriavidus
1	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria	o__Burkholderiales	f__Burkholderiaceae	g__Cupriavidus	s__Cupriavidus_basilensis
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria	x__Betaproteobacteria_incertae_sedis
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Betaproteobacteria	x__Betaproteobacteria_incertae_sedis	g__Candidatus_Kinetoplastibacterium
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0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	x__delta/epsilon_subdivisions
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	x__delta/epsilon_subdivisions	c__Epsilonproteobacteria
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	x__delta/epsilon_subdivisions	c__Epsilonproteobacteria	o__Campylobacterales
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	x__delta/epsilon_subdivisions	c__Epsilonproteobacteria	o__Campylobacterales	f__Campylobacteraceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	x__delta/epsilon_subdivisions	c__Epsilonproteobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter
2	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	x__delta/epsilon_subdivisions	c__Epsilonproteobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_hepaticus
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Flavobacteriia
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Flavobacteriia	o__Flavobacteriales
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Flavobacteriia	o__Flavobacteriales	f__Blattabacteriaceae
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0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Bacteroidia
2	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Bacteroidia	o__Bacteroidales
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Sphingobacteriia
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Sphingobacteriia	o__Sphingobacteriales
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Sphingobacteriia	o__Sphingobacteriales	f__Sphingobacteriaceae
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Sphingobacteriia	o__Sphingobacteriales	f__Sphingobacteriaceae	g__Sphingobacterium
1	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Sphingobacteriia	o__Sphingobacteriales	f__Sphingobacteriaceae	g__Sphingobacterium	s__Sphingobacterium_multivorum
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Cytophagia
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Cytophagia	o__Cytophagales
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Cytophagia	o__Cytophagales	f__Flammeovirgaceae
0	x__root	x__cellular_organisms	k__Bacteria	x__FCB_group	x__Bacteroidetes/Chlorobi_group	p__Bacteroidetes	c__Cytophagia	o__Cytophagales	f__Flammeovirgaceae	g__Flammeovirga
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0	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria
0	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia
0	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia	o__Fusobacteriales
0	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium
0	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	s__Fusobacterium_nucleatum
1	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	s__Fusobacterium_nucleatum	x__Fusobacterium_nucleatum_subsp._polymorphum
1	x__root	x__cellular_organisms	k__Bacteria	p__Fusobacteria	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	s__Fusobacterium_hwasookii
0	x__root	x__cellular_organisms	k__Bacteria	p__Spirochaetes
0	x__root	x__cellular_organisms	k__Bacteria	p__Spirochaetes	c__Spirochaetia
0	x__root	x__cellular_organisms	k__Bacteria	p__Spirochaetes	c__Spirochaetia	o__Brachyspirales
0	x__root	x__cellular_organisms	k__Bacteria	p__Spirochaetes	c__Spirochaetia	o__Brachyspirales	f__Brachyspiraceae
0	x__root	x__cellular_organisms	k__Bacteria	p__Spirochaetes	c__Spirochaetia	o__Brachyspirales	f__Brachyspiraceae	g__Brachyspira
1	x__root	x__cellular_organisms	k__Bacteria	p__Spirochaetes	c__Spirochaetia	o__Brachyspirales	f__Brachyspiraceae	g__Brachyspira	s__Brachyspira_hyodysenteriae
0	x__root	x__cellular_organisms	k__Archaea
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota	x__Stenosarchaea_group
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota	x__Stenosarchaea_group	c__Methanomicrobia
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota	x__Stenosarchaea_group	c__Methanomicrobia	o__Methanosarcinales
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota	x__Stenosarchaea_group	c__Methanomicrobia	o__Methanosarcinales	f__Methanosarcinaceae
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota	x__Stenosarchaea_group	c__Methanomicrobia	o__Methanosarcinales	f__Methanosarcinaceae	g__Methanosarcina
0	x__root	x__cellular_organisms	k__Archaea	p__Euryarchaeota	x__Stenosarchaea_group	c__Methanomicrobia	o__Methanosarcinales	f__Methanosarcinaceae	g__Methanosarcina	s__Methanosarcina_barkeri
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0	x__root	x__cellular_organisms	k__Archaea	x__TACK_group
0	x__root	x__cellular_organisms	k__Archaea	x__TACK_group	p__Thaumarchaeota
0	x__root	x__cellular_organisms	k__Archaea	x__TACK_group	p__Thaumarchaeota	c__Nitrososphaeria
0	x__root	x__cellular_organisms	k__Archaea	x__TACK_group	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales
0	x__root	x__cellular_organisms	k__Archaea	x__TACK_group	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales	f__Nitrososphaeraceae
0	x__root	x__cellular_organisms	k__Archaea	x__TACK_group	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales	f__Nitrososphaeraceae	g__Candidatus_Nitrosocosmicus
1	x__root	x__cellular_organisms	k__Archaea	x__TACK_group	p__Thaumarchaeota	c__Nitrososphaeria	o__Nitrososphaerales	f__Nitrososphaeraceae	g__Candidatus_Nitrosocosmicus	s__Candidatus_Nitrosocosmicus_franklandus