comparison lastdb.xml @ 1:86206f93fb13 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 67b8e5adffa4015ee60b1b4a0cd220f632ba1082"

0:9a7e91fc6562

<tool id="last_db" name="LASTdb" version="@LAST_CONDA_VERSION@+galaxy0" profile="18.01">

    <description>prepares sequences for subsequent comparison and alignment using lastal.</description>

    <macros>
        <import>macros_last.xml</import>

        mkdir '$outfile.files_path' &&
        mv lastdb.* '$outfile.files_path'
    ]]></command>

    <inputs>
        <param name="input_files" type="data" format="FASTA" label="Reference(s) input files" />
        <section name="lastdb" title="Lastdb arguments" expanded="true">
            <param argument="-Q" type="select" multiple="false" label="Input format">
                <option value="0" selected="true">fasta or fastq-ignore</option>
                <option value="1">fastq-sanger</option>
                <option value="2">fastq-solexa</option>
                <option value="3">fastq-illumina</option>
            </param>

1:86206f93fb13

<tool id="last_db" name="LASTdb" version="@LAST_CONDA_VERSION@+galaxy1" profile="18.01">

    <description>prepares sequences for subsequent comparison and alignment using lastal.</description>

    <macros>
        <import>macros_last.xml</import>

        mkdir '$outfile.files_path' &&
        mv lastdb.* '$outfile.files_path'
    ]]></command>

    <inputs>
        <param name="input_files" type="data" format="fasta,fastqsanger,fastqsolexa,fastqillumina" label="Reference(s) input files" />
        <section name="lastdb" title="Lastdb arguments" expanded="true">
            <param argument="-Q" type="select" multiple="false" label="Input format">
                <option value="0" selected="true">FASTA</option>
                <option value="1">fastq-sanger</option>
                <option value="2">fastq-solexa</option>
                <option value="3">fastq-illumina</option>
            </param>