comparison test-data/last_align_prot.maf @ 4:8705e0d74a0f draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"

3:3de2195f32c0

# LAST version 1021
#
# a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09
# R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# ref_db
# Reference sequences=1 normal letters=411
# lambda=0.305935 K=0.102404
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4

# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
a score=729 EG2=1.4e-80 E=1.2e-101
s NP_002172.2    13 264 + 411 LVLLLLLVVPA----AWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLL
s NP_001034065.1 66 265 + 471 LVALLLIVLPMVFSPAHSCGPGRGLGRHRA--RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHT-DGGAVLTVTPAHLV

a score=131 EG2=0.4 E=4.1e-14
s NP_002172.2    293 95 + 411 FASHVQPGQYVLVAGVPG--LQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG-EGVHWYPQLL
s NP_001034065.1 344 96 + 471 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLE--AWLPAKEQLHSSPKVV

a score=41 EG2=3.7e+11 E=0.06
s NP_002172.2    91 34 + 411 KDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV
s NP_001034065.1 44 34 + 471 QEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMV

a score=30 EG2=1.1e+13 E=1.8
s NP_002172.2    180 18 + 411 ESKAHVHCSVKSEHSAAA
s NP_001034065.1  20 18 + 471 DAKCHSSSSSSSSKSAAS

a score=24 EG2=6.6e+13 E=12
s NP_002172.2     26 23 + 411 GCGPGRVVGSRRRPPRKLVPLAY
s NP_001034065.1 150 21 + 471 GTGADRLMSKRCK--EKLNVLAY

a score=24 EG2=6.6e+13 E=12
s NP_002172.2    106 27 + 411 CKDRLNSLAISVMNQWPGVKLRVTEGW
s NP_001034065.1 399 27 + 471 CYAVINSQSLAHWGLAPMRLLSTLEAW

# Query sequences=1

4:8705e0d74a0f

# LAST version 1205
#
# a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09
# R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/hedgdb
# Reference sequences=1 normal letters=411
# lambda=0.305935 K=0.102404
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4

# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
# Query sequences=1