comparison lastdb.xml @ 7:eca7ac1eb423 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit ddb5e058a7877e627ed24ef8cb9a046ccb450cb4

6:19c265784f35

<tool id="last_db" name="LASTdb" version="@TOOL_VERSION@+galaxy0" profile="20.01">

    <description>prepares sequences for subsequent comparison and alignment using lastal.</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros_last.xml</import>
    </macros>

    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">last</requirement>
    </requirements>

    <command detect_errors="exit_code"><![CDATA[
        set -e -o pipefail; 

        #if $input_files.ext.endswith('.gz')
        zcat 

            </section>
        </section>
    </inputs>

    <outputs>
        <data name="outfile" format="lastdb">
            <discover_datasets pattern="__designation__" directory="ref_genome"/>
        </data>
    </outputs>

    <tests>
        <test>
            <param name="input_files" value="humanMito.fa.gz" ftype="fasta.gz"/>

7:eca7ac1eb423

<tool id="last_db" name="LASTdb" version="@TOOL_VERSION@+galaxy1" profile="20.01">
    <description>prepares sequences for subsequent comparison and alignment using lastal.</description>
    <macros>
        <import>macros_last.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements"/>
    <command detect_errors="exit_code"><![CDATA[
        set -e -o pipefail; 

        #if $input_files.ext.endswith('.gz')
        zcat 

            </section>
        </section>
    </inputs>

    <outputs>
        <data name="outfile" format="lastdb"/>
    </outputs>

    <tests>
        <test>
            <param name="input_files" value="humanMito.fa.gz" ftype="fasta.gz"/>