Mercurial > repos > iuc > last
comparison maf-convert.xml @ 5:f5a5a2b39ff2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 4568799de240022f4058ec1602e08f536916e2af"
| author | iuc |
|---|---|
| date | Thu, 25 Mar 2021 20:53:27 +0000 |
| parents | 8705e0d74a0f |
| children | 19c265784f35 |
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| 4:8705e0d74a0f | 5:f5a5a2b39ff2 |
|---|---|
| 57 <option value="html">html</option> | 57 <option value="html">html</option> |
| 58 <option value="psl" selected="true">psl</option> | 58 <option value="psl" selected="true">psl</option> |
| 59 <option value="sam">sam</option> | 59 <option value="sam">sam</option> |
| 60 <option value="tab">tab</option> | 60 <option value="tab">tab</option> |
| 61 </param> | 61 </param> |
| 62 <when value="axt"/> | |
| 62 <when value="blast"> | 63 <when value="blast"> |
| 63 <param argument="-l" type="integer" value="60" label="Line length"/> | 64 <param argument="-l" type="integer" value="60" label="Line length"/> |
| 64 </when> | 65 </when> |
| 66 <when value="blasttab"/> | |
| 67 <when value="chain"/> | |
| 65 <when value="html"> | 68 <when value="html"> |
| 66 <param argument="-l" type="integer" value="60" label="Line length"/> | 69 <param argument="-l" type="integer" value="60" label="Line length"/> |
| 67 </when> | 70 </when> |
| 68 <when value="psl"> | 71 <when value="psl"> |
| 69 <param name="protein" argument="-p" type="boolean" truevalue="-p" falsevalue="" checked="false" label="Protein alignments." /> | 72 <param name="protein" argument="-p" type="boolean" truevalue="-p" falsevalue="" checked="false" label="Protein alignments." /> |
| 70 <param argument="-j" type="integer" value="1" label="Join neighboring alignments" help="Join neighboring alignments if they are co-linear and separated by at most N letters."/> | 73 <param argument="-j" type="integer" value="1" label="Join neighboring alignments" help="Join neighboring alignments if they are co-linear and separated by at most N letters."/> |
| 71 </when> | 74 </when> |
| 72 <when value="sam"> | 75 <when value="sam"> |
| 73 <conditional name="sam_file"> | 76 <conditional name="sam_file"> |
| 74 <param name="dictionary" argument="-d" type="boolean" truevalue="-d" falsevalue="" checked="false" label="Include dictionary of sequence lengths in sam format"/> | 77 <param name="dictionary" argument="-d" type="select" label="Include dictionary of sequence lengths in sam format"> |
| 78 <option value="-d">Yes</option> | |
| 79 <option value="" selected="true">No</option> | |
| 80 </param> | |
| 81 <when value=""/> | |
| 75 <when value="-d"> | 82 <when value="-d"> |
| 76 <param argument="-f" type="data" format="dict" label="Get a sequence dictionary from DICTFILE" /> | 83 <param argument="-f" type="data" format="dict" label="Get a sequence dictionary from DICTFILE" /> |
| 77 </when> | 84 </when> |
| 78 </conditional> | 85 </conditional> |
| 79 <param argument="-r" type="text" value="" label="Specify read group information" help="Example: 'ID:1 PL:ILLUMINA SM:mysample'"/> | 86 <param argument="-r" type="text" value="" label="Specify read group information" help="Example: 'ID:1 PL:ILLUMINA SM:mysample'"/> |
| 80 </when> | 87 </when> |
| 88 <when value="tab"/> | |
| 81 </conditional> | 89 </conditional> |
| 82 </section> | 90 </section> |
| 83 </inputs> | 91 </inputs> |
| 84 | 92 |
| 85 <outputs> | 93 <outputs> |