Mercurial > repos > iuc > last
comparison test-data/last_align_prot.maf @ 5:f5a5a2b39ff2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 4568799de240022f4058ec1602e08f536916e2af"
author | iuc |
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date | Thu, 25 Mar 2021 20:53:27 +0000 |
parents | 8705e0d74a0f |
children |
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4:8705e0d74a0f | 5:f5a5a2b39ff2 |
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1 # LAST version 1205 | 1 # LAST version 1205 |
2 # | 2 # |
3 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09 | 3 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09 |
4 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0 | 4 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0 |
5 # /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/hedgdb | 5 # /home/berntm/.planemo/planemo_tmp_vt3pko3h/test-data/hedgdb |
6 # Reference sequences=1 normal letters=411 | 6 # Reference sequences=1 normal letters=411 |
7 # lambda=0.305935 K=0.102404 | 7 # lambda=0.305935 K=0.102404 |
8 # | 8 # |
9 # A R N D C Q E G H I L K M F P S T W Y V B J Z X * | 9 # A R N D C Q E G H I L K M F P S T W Y V B J Z X * |
10 # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 | 10 # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 |
37 # in the reverse complement of the 2nd sequence are used. | 37 # in the reverse complement of the 2nd sequence are used. |
38 # | 38 # |
39 # name start alnSize strand seqSize alignment | 39 # name start alnSize strand seqSize alignment |
40 # | 40 # |
41 # batch 0 | 41 # batch 0 |
42 a score=729 EG2=1.4e-80 E=1.2e-101 | |
43 s NP_002172.2 13 264 + 411 LVLLLLLVVPA----AWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLL | |
44 s NP_001034065.1 66 265 + 471 LVALLLIVLPMVFSPAHSCGPGRGLGRHRA--RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHT-DGGAVLTVTPAHLV | |
45 | |
46 a score=131 EG2=0.4 E=4.1e-14 | |
47 s NP_002172.2 293 95 + 411 FASHVQPGQYVLVAGVPG--LQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG-EGVHWYPQLL | |
48 s NP_001034065.1 344 96 + 471 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLE--AWLPAKEQLHSSPKVV | |
49 | |
50 a score=50 EG2=2.3e+10 E=0.0037 | |
51 s NP_002172.2 379 23 + 411 GVHWYPQLLYRLGRLLLEEGSFH | |
52 s NP_001034065.1 447 23 + 471 GIHWYANALYKVKDYVLPQSWRH | |
53 | |
54 a score=41 EG2=3.7e+11 E=0.06 | |
55 s NP_002172.2 91 34 + 411 KDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV | |
56 s NP_001034065.1 44 34 + 471 QEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMV | |
57 | |
58 a score=32 EG2=5.7e+12 E=0.99 | |
59 s NP_002172.2 183 24 + 411 AHVHCSVKSEHSAAAKTGGCFPAG | |
60 s NP_001034065.1 252 24 + 471 SHVHGCFTPESTALLESGVRKPLG | |
61 | |
62 a score=31 EG2=7.8e+12 E=1.3 | |
63 s NP_002172.2 146 21 + 411 EGRAVDITTSDRDRNKYGLLA | |
64 s NP_001034065.1 149 21 + 471 EGTGADRLMSKRCKEKLNVLA | |
65 | |
66 a score=31 EG2=7.8e+12 E=1.3 | |
67 s NP_002172.2 394 16 + 411 LLEEGSFHPLGMSGAG | |
68 s NP_001034065.1 265 16 + 471 LLESGVRKPLGELSIG | |
69 | |
70 a score=30 EG2=1.1e+13 E=1.8 | |
71 s NP_002172.2 23 13 + 411 AAWGCGPGRVVGS | |
72 s NP_001034065.1 409 13 + 471 AHWGLAPMRLLST | |
73 | |
74 a score=30 EG2=1.1e+13 E=1.8 | |
75 s NP_002172.2 180 18 + 411 ESKAHVHCSVKSEHSAAA | |
76 s NP_001034065.1 20 18 + 471 DAKCHSSSSSSSSKSAAS | |
77 | |
78 a score=28 EG2=2e+13 E=3.4 | |
79 s NP_002172.2 167 20 + 411 RLAVEAGFDWVYYESKAHVH | |
80 s NP_001034065.1 180 20 + 471 RLLVTESWDEDYHHGQESLH | |
81 | |
82 a score=28 EG2=2e+13 E=3.4 | |
83 s NP_002172.2 181 20 + 411 SKAHVHCSVKSEHSAAAKTG | |
84 s NP_001034065.1 428 20 + 471 AKEQLHSSPKVVSSAQQQNG | |
85 | |
86 a score=26 EG2=3.6e+13 E=6.4 | |
87 s NP_002172.2 233 17 + 411 EDGSPTFSDVLIFLDRE | |
88 s NP_001034065.1 133 17 + 471 KDLVPNYNRDILFRDEE | |
89 | |
90 a score=25 EG2=4.9e+13 E=8.7 | |
91 s NP_002172.2 236 14 + 411 SPTFSDVLIFLDRE | |
92 s NP_001034065.1 129 14 + 471 SPKFKDLVPNYNRD | |
93 | |
94 a score=24 EG2=6.6e+13 E=12 | |
95 s NP_002172.2 10 16 + 411 HFCLVLLLLLVVPAAW | |
96 s NP_001034065.1 410 16 + 471 HWGLAPMRLLSTLEAW | |
97 | |
98 a score=24 EG2=6.6e+13 E=12 | |
99 s NP_002172.2 26 23 + 411 GCGPGRVVGSRRRPPRKLVPLAY | |
100 s NP_001034065.1 150 21 + 471 GTGADRLMSKRCK--EKLNVLAY | |
101 | |
102 a score=24 EG2=6.6e+13 E=12 | |
103 s NP_002172.2 48 32 + 411 YKQFSPNVPEKTLGASGRYEGKIARSSERFKE | |
104 s NP_001034065.1 132 32 + 471 FKDLVPNYNRDILFRDEEGTGADRLMSKRCKE | |
105 | |
106 a score=24 EG2=6.6e+13 E=12 | |
107 s NP_002172.2 106 27 + 411 CKDRLNSLAISVMNQWPGVKLRVTEGW | |
108 s NP_001034065.1 399 27 + 471 CYAVINSQSLAHWGLAPMRLLSTLEAW | |
109 | |
110 a score=24 EG2=6.6e+13 E=12 | |
111 s NP_002172.2 143 8 + 411 LHYEGRAV | |
112 s NP_001034065.1 314 8 + 471 LHTDGGAV | |
113 | |
114 a score=24 EG2=6.6e+13 E=12 | |
115 s NP_002172.2 157 14 + 411 RDRNKYGLLARLAV | |
116 s NP_001034065.1 94 14 + 471 RARNLYPLVLKQTI | |
117 | |
118 a score=23 EG2=9e+13 E=16 | |
119 s NP_002172.2 20 6 + 411 VVPAAW | |
120 s NP_001034065.1 462 6 + 471 VLPQSW | |
121 | |
122 a score=23 EG2=9e+13 E=16 | |
123 s NP_002172.2 146 22 + 411 EGRAVDITTSDRDRNKYGLLAR | |
124 s NP_001034065.1 336 22 + 471 ESQKLTFVFADRIEEKNQVLVR | |
125 | |
126 a score=23 EG2=9e+13 E=16 | |
127 s NP_002172.2 173 11 + 411 GFDWVYYESKA | |
128 s NP_001034065.1 194 11 + 471 GQESLHYEGRA | |
129 | |
130 a score=23 EG2=9e+13 E=16 | |
131 s NP_002172.2 207 15 + 411 AQVRLESGARVALSA | |
132 s NP_001034065.1 428 15 + 471 AKEQLHSSPKVVSSA | |
133 | |
134 a score=23 EG2=9e+13 E=16 | |
135 s NP_002172.2 317 14 + 411 AAVSTHVALGAYAP | |
136 s NP_001034065.1 248 13 + 471 SSISSHVH-GCFTP | |
137 | |
138 a score=23 EG2=9e+13 E=16 | |
139 s NP_002172.2 331 13 + 411 LTKHGTLVVEDVV | |
140 s NP_001034065.1 286 13 + 471 MTANGQAVYSEVI | |
141 | |
142 a score=23 EG2=9e+13 E=16 | |
143 s NP_002172.2 361 11 + 411 WP-LRLFHSLAW | |
144 s NP_001034065.1 176 12 + 471 WPGIRLLVTESW | |
145 | |
146 a score=22 EG2=1.2e+14 E=22 | |
147 s NP_002172.2 264 22 + 411 PPRRLALTPAHLLFTADNHTEP | |
148 s NP_001034065.1 415 22 + 471 PMRLLSTLEAWLPAKEQLHSSP | |
149 | |
150 a score=22 EG2=1.2e+14 E=22 | |
151 s NP_002172.2 268 7 + 411 LALTPAH | |
152 s NP_001034065.1 76 7 + 471 MVFSPAH | |
153 | |
154 a score=22 EG2=1.2e+14 E=22 | |
155 s NP_002172.2 277 21 + 411 FTADNHTEPAARFRATFASHV | |
156 s NP_001034065.1 234 21 + 471 YVSRRHIYCSVKSDSSISSHV | |
157 | |
42 # Query sequences=1 | 158 # Query sequences=1 |