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changeset 2:0411fca1d681 draft default tip

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planemo upload for repository https://github.com/tseemann/legsta commit ba53da012895c122e1fb7576c68d18c1a70320b4
author iuc
date Tue, 12 Mar 2024 11:16:20 +0000
parents 579f1cabfe79
children
files legsta.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/legsta.xml	Wed Mar 09 20:49:51 2022 +0000
+++ b/legsta.xml	Tue Mar 12 11:16:20 2024 +0000
@@ -1,9 +1,12 @@
-<tool id="legsta" name="legsta" version="@TOOL_VERSION@+galaxy1" profile="20.01">
+<tool id="legsta" name="legsta" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
     <description>Legionella pneumophila sequence based typing</description>
 
     <macros>
         <import>macros.xml</import>
     </macros>
+    <xrefs>
+        <xref type="bio.tools">legsta</xref>
+    </xrefs>
     <expand macro="requirements"/>
 
     <command detect_errors="exit_code"><![CDATA[
@@ -30,15 +33,14 @@
 
     <inputs>
         <param type="data" name="contigs" format="genbank,embl,gff,gff3,fasta,fasta.gz,fastq,fastq.gz,clustal,stockholm" multiple="true" label="Contigs" help="One or more input files in FASTA, FASTQ, Genbank, EMBL, Clustal, Stockholm or GFF format." />
-        <param name="noheader" type="boolean" argument="--noheader" truevalue="--noheader" falsevalue="" label="Remove table header" help="Removes the table header from the output (ie. FILE SBT flaA ...)" />
-        <param name="csv" type="boolean" argument="--csv" truevalue="--csv" falsevalue="" label="CSV output" help="Prints the output in comma-separated value format instead of tab-separated value format." />
+        <param argument="--noheader" type="boolean" truevalue="--noheader" falsevalue="" label="Remove table header" help="Removes the table header from the output (ie. FILE SBT flaA ...)" />
+        <param argument="--csv" type="boolean" truevalue="--csv" falsevalue="" label="CSV output" help="Prints the output in comma-separated value format instead of tab-separated value format." />
     </inputs>
 
     <outputs>
         <data name="output" format="tabular">
             <change_format>
                 <when input="csv" value="--csv" format="csv" />
-                <when input="csv" value="" format="tabular" />
             </change_format>
         </data>
     </outputs>
--- a/macros.xml	Wed Mar 09 20:49:51 2022 +0000
+++ b/macros.xml	Tue Mar 12 11:16:20 2024 +0000
@@ -6,4 +6,5 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.5.1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 </macros>