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comparison limma_voom.xml @ 15:41573afd6871 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/limma_voom commit 31b550aeaf886377ed0feaa7319a7ef3c6b68253
author iuc
date Sat, 05 Jan 2019 05:35:53 -0500
parents 3133e833b3ce
children 5d903d528193
comparison
equal deleted inserted replaced
14:3133e833b3ce 15:41573afd6871
1 <tool id="limma_voom" name="limma" version="3.34.9.10"> 1 <tool id="limma_voom" name="limma" version="3.36.5">
2 <description> 2 <description>
3 Perform differential expression with limma-voom or limma-trend 3 Perform differential expression with limma-voom or limma-trend
4 </description> 4 </description>
5 5
6 <requirements> 6 <requirements>
7 <requirement type="package" version="3.34.9">bioconductor-limma</requirement> 7 <requirement type="package" version="3.36.5">bioconductor-limma</requirement>
8 <requirement type="package" version="3.20.7">bioconductor-edger</requirement> 8 <requirement type="package" version="3.22.5">bioconductor-edger</requirement>
9 <requirement type="package" version="1.4.30">r-statmod</requirement> 9 <requirement type="package" version="1.4.30">r-statmod</requirement>
10 <requirement type="package" version="0.5.0">r-scales</requirement> 10 <requirement type="package" version="1.0.0">r-scales</requirement>
11 <requirement type="package" version="0.2.15">r-rjson</requirement> 11 <requirement type="package" version="0.2.20">r-rjson</requirement>
12 <requirement type="package" version="1.20.0">r-getopt</requirement> 12 <requirement type="package" version="1.20.2">r-getopt</requirement>
13 <requirement type="package" version="3.0.1">r-gplots</requirement> 13 <requirement type="package" version="3.0.1">r-gplots</requirement>
14 <requirement type="package" version="1.6.0">bioconductor-glimma</requirement> 14 <requirement type="package" version="1.8.2">bioconductor-glimma</requirement>
15 </requirements> 15 </requirements>
16 16
17 <version_command><![CDATA[ 17 <version_command><![CDATA[
18 echo $(R --version | grep version | grep -v GNU)", limma version" $(R --vanilla --slave -e "library(limma); cat(sessionInfo()\$otherPkgs\$limma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", statmod version" $(R --vanilla --slave -e "library(statmod); cat(sessionInfo()\$otherPkgs\$statmod\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", Glimma version" $(R --vanilla --slave -e "library(Glimma); cat(sessionInfo()\$otherPkgs\$Glimma\$Version)" 2> /dev/null | grep -v -i "WARNING: ") 18 echo $(R --version | grep version | grep -v GNU)", limma version" $(R --vanilla --slave -e "library(limma); cat(sessionInfo()\$otherPkgs\$limma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", statmod version" $(R --vanilla --slave -e "library(statmod); cat(sessionInfo()\$otherPkgs\$statmod\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", Glimma version" $(R --vanilla --slave -e "library(Glimma); cat(sessionInfo()\$otherPkgs\$Glimma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
19 ]]></version_command> 19 ]]></version_command>