comparison limma_voom.xml @ 10:e26047c4562d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/limma_voom commit c31767d02eeeda7346bb33ba71ebde9189d7e4a3

9:4255881bebb1

<tool id="limma_voom" name="limma" version="3.34.9.5">
    <description>
        Perform differential expression with limma-voom or limma-trend
    </description>

    <requirements>

            <when value="no" />
        </conditional>

        <!-- Contrasts -->
        <repeat name="rep_contrast" title="Contrast" min="1" default="1">
            <param name="contrast" type="text" label="Contrast of Interest" help="Names of two groups to compare separated by a hyphen e.g. Mut-WT. If the order is Mut-WT the fold changes in the results will be up/down in Mut relative to WT. If you have more than one contrast enter each separately using the Insert Contrast button below. For differences between contrasts use e.g. (Mut1-WT)-(Mut2-WT). For more info, see Chapter 8 in the limma User's guide: https://www.bioconductor.org/packages/release/bioc/vignettes/limma/inst/doc/usersguide.pdf">
                <validator type="empty_field" />
                <validator type="regex" message="Please only use letters, numbers or underscores">^[\(\w\)-]+$</validator>
            </param>
        </repeat>

10:e26047c4562d

<tool id="limma_voom" name="limma" version="3.34.9.6">
    <description>
        Perform differential expression with limma-voom or limma-trend
    </description>

    <requirements>

            <when value="no" />
        </conditional>

        <!-- Contrasts -->
        <repeat name="rep_contrast" title="Contrast" min="1" default="1">
            <param name="contrast" type="text" label="Contrast of Interest" help="Names of two groups to compare separated by a hyphen e.g. Mut-WT. If the order is Mut-WT the fold changes in the results will be up/down in Mut relative to WT. If you have more than one contrast enter each separately using the Insert Contrast button below. For differences between contrasts use e.g. (Mut1-Ctrl1)-(Mut2-Ctrl2). For more info, see Chapter 8 in the limma User's guide: https://www.bioconductor.org/packages/release/bioc/vignettes/limma/inst/doc/usersguide.pdf">
                <validator type="empty_field" />
                <validator type="regex" message="Please only use letters, numbers or underscores">^[\(\w\)-]+$</validator>
            </param>
        </repeat>